View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_6 (Length: 565)
Name: NF14194_low_6
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_6 |
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| [»] scaffold0361 (3 HSPs) |
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Alignment Details
Target: scaffold0361 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 13 - 544
Target Start/End: Original strand, 12434 - 12965
Alignment:
| Q |
13 |
atgaagtagaattgaaacaacatagcaagaaacacctgtcccattaagtgaatatgtatcggctaagtgctaaccatcacatcgtagtagcaatatcacg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12434 |
atgaagtagaattgaaacaacatagcaagaaacacctgtcccattaagtgaatatgtatcggctaagtgctaaccatcacatcgtagtagcaatatcacg |
12533 |
T |
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| Q |
113 |
agcttgtgattcnnnnnnnnnnnnncttcaatctatcgaaattatgcaaaaaggggaattgcactcaaacaatatcaccatgagatgataaatctagggg |
212 |
Q |
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| T |
12534 |
agcttgtgattcaaaaagaaaaaaacttcaatctatcgaaattatgcaaaaaggggaattgcactcaaacaatatcaccatgagatgataaatctagggg |
12633 |
T |
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| Q |
213 |
atatgaattatctcatgttactgttatttttctaaggcctgaagcttgatttcacaatagaaggttcacggttggtcgcagttcaccgaactctaggcat |
312 |
Q |
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| T |
12634 |
atatgaattatctcatgttactgttatttttctaaggcctgaagcttgatttcacaatagaaggttcacggttggtcgcagttcaccgaactctaggcat |
12733 |
T |
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| Q |
313 |
tacaagttcagctagagaactgacatataaaacatgattcagttagtaaattacgttaccagatcagnnnnnnnaatggcagtttggttcattttggttc |
412 |
Q |
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| T |
12734 |
tacaagttcagctagagaactgacatataaaacatgattcagttagtaaattacgttaccagatcagtttttttaatggcagtttggttcattttggttc |
12833 |
T |
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| Q |
413 |
caaagagttatttgaacagcccaaacaaacactattaactataaatgtataacggttctccataaacaaaattgctcactaaagttgtacagcttaagca |
512 |
Q |
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| T |
12834 |
caaagagttatttgaacagcccaaacaaacactattaactataaatgtataacggttctccataaacaaaattgctcactaaagttgtacagcttaagca |
12933 |
T |
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| Q |
513 |
atacaatttttcaaaccctgcaaagtttctat |
544 |
Q |
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| T |
12934 |
atacaatttttcaaaccctgcaaagtttctat |
12965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 16459 - 16373
Alignment:
| Q |
397 |
tggttcattttggttccaaagagttatttgaacagcccaaacaaacactattaactataaatgtataacggttctccataaacaaaa |
483 |
Q |
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| T |
16459 |
tggttcagtttggttctaaagagttatttgaacagctcgaacaaattccgttaactataaatgtataatggttcgccgtaaacaaaa |
16373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 17316 - 17256
Alignment:
| Q |
306 |
taggcattacaagttcagctagagaactgacata-taaaacatgattcagttagtaaatta |
365 |
Q |
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| T |
17316 |
taggcattacaagttcagttagagaactgacatatttacacatggttcagttagtaaatta |
17256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 183 - 544
Target Start/End: Original strand, 4947946 - 4948298
Alignment:
| Q |
183 |
aatatcaccatgagatgataaatctaggggatatgaattatctcatgttactgttatttttctaaggcctgaagcttgatttcacaatagaaggttcacg |
282 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4947946 |
aatatcaccatgagatgatatatctaggggatatgaattatctcatgttactgttattgttctaaggcctgaagcttgatttcacaatagaaggttcaca |
4948045 |
T |
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| Q |
283 |
gttggtcgcagttcaccgaactctaggcattacaagttcagctagagaactgacatataaaacatgattcagttagtaaattacgttaccagatcagnnn |
382 |
Q |
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| T |
4948046 |
gttggtcgcagttcaccgaattctaagcattacaagttcagctagagaactgacatattaaacatgattcagttagtaaatcacgttagcagat------ |
4948139 |
T |
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| Q |
383 |
nnnnaatggcagtttggttcattttggttccaaagagttatttgaacagcccaaacaaacactattaac------tataaatgtataacggttctccata |
476 |
Q |
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| T |
4948140 |
---------cagtttggttcattttggttctaaagagttatttgaacagcccaaacaaacactgttaactataattataaatgtataacggttctacata |
4948230 |
T |
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| Q |
477 |
aacaaaattgctcactaaagttgtacagcttaagcaatacaatttttcaaaccctgcaaagtttctat |
544 |
Q |
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| T |
4948231 |
aacaaaattgcttactaaagttgtatcgcttcagcaatacaatttttcaaatgctgcaaagtttctat |
4948298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 4947796 - 4947889
Alignment:
| Q |
14 |
tgaagtagaattgaaacaacatagcaagaaacacctgtcccattaagtgaatatgtatcggctaagtgctaaccatcacatcgtagtagcaatat |
108 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4947796 |
tgaagtagaattgaaacaacatagcaagaaacacatgtcccattatatgaata-gtatcagctaagtgctaaccatcacatcgtagtagcaatat |
4947889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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