View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14194_low_9 (Length: 419)
Name: NF14194_low_9
Description: NF14194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14194_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 5 - 403
Target Start/End: Original strand, 31339428 - 31339826
Alignment:
| Q |
5 |
aagtgttgtttgataaactatgttgtttgtgatattcagtgagggnnnnnnngagctagggtcgggaaaacatcgtgaacaaaagggagatttcatcaaa |
104 |
Q |
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| T |
31339428 |
aagtgttgtttgataaactatgttgtttgtgatattcagtgagggtttttttgagctagggtcgggaaaacatcgtgaacaaaaaggagatttcatcaaa |
31339527 |
T |
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| Q |
105 |
aaattcatcataaattttatacttaattggtttcaaaacgaatttgagaaaaatattcagacatcaagtttttcagaaaatgtttcgaggaacatgaaat |
204 |
Q |
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| T |
31339528 |
aaattcatcataaattttatacttaattggtttcaaaacgaatttgagaaaaatattcagacatcaagtttttcagaaaatgtttcgaggaacatgaaat |
31339627 |
T |
|
| Q |
205 |
ttatgtaaattattttgttatctttaaatttaattaaggacttaattaaagttcttgaaaatattttgagaaagttattttactagtgatagtaaagtct |
304 |
Q |
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| T |
31339628 |
ttatgtaaattattttgttatctttaaatttaattaaggacttaattaaagttcttgaaaatattttgagaaagttattttactagtgatagtaaagtct |
31339727 |
T |
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| Q |
305 |
ttatatctaagtgaaactacattcttttgaccattgttgaactagaccacaggtgagtagaatttcttagagctatgaggctcacctaaactactatat |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31339728 |
ttatatctaagtgaaactacattcttttgaccattgttgaactagaccacgggtgagtagaatttcttagagctatgaggctcacctaaactactatat |
31339826 |
T |
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