View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14195_high_11 (Length: 383)
Name: NF14195_high_11
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14195_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 150 - 354
Target Start/End: Complemental strand, 5351988 - 5351784
Alignment:
| Q |
150 |
gaactccctccaaattattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctaaaacgcgtttaagaaaaactcgggttt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5351988 |
gaactccctccaaattattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctgaaacgcgtttaagaaaaactcgggttt |
5351889 |
T |
|
| Q |
250 |
attgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcactatggcagcagac |
349 |
Q |
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|||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||| || || ||||||||||||||||||||||||||||||||| |
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| T |
5351888 |
attgatgaaatgaagatcgatgaaaactccaatttgtcggagatgatagtgtgactttgcaccgccgtgtcctcctccaacactcactatggcagcagac |
5351789 |
T |
|
| Q |
350 |
tttcc |
354 |
Q |
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||||| |
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| T |
5351788 |
tttcc |
5351784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 165 - 347
Target Start/End: Complemental strand, 5344955 - 5344773
Alignment:
| Q |
165 |
tattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctaaaacgcgtttaagaaaaactcgggtttattgatgaaatgaag |
264 |
Q |
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||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||||| ||| || ||||||||||| ||||||||||| ||||||||||| |
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| T |
5344955 |
tattcttagcatcttcatcaatcaaatcaccatcactattaaattttgctggaggctgaaaagcatttaagaaaaattcgggtttatttatgaaatgaag |
5344856 |
T |
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| Q |
265 |
atcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcactatggcagcag |
347 |
Q |
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| T |
5344855 |
atcaaggaaaactccgatttgtcggagatgatattgtgattttgcaccaccatgccctcctccagcactcactatggccgcag |
5344773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 239 - 354
Target Start/End: Original strand, 5325212 - 5325327
Alignment:
| Q |
239 |
aactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcacta |
338 |
Q |
| |
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||||| ||||||||||||||||||| ||||| |||||| || |||||||||||||| | |||| ||| |||||||| |||||||||||||||| | |
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| T |
5325212 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgctgtgcttttcctccaccaaaggctcctccaacactcacaa |
5325311 |
T |
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| Q |
339 |
tggcagcagactttcc |
354 |
Q |
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||||||||| |||||| |
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| T |
5325312 |
tggcagcaggctttcc |
5325327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 347
Target Start/End: Original strand, 5338232 - 5338340
Alignment:
| Q |
239 |
aactcgggtttattgatgaaatgaagatcaatgaaaacaccaatttggcggagatggtagtgtgactttgctccaccatgtcctcctccaacactcacta |
338 |
Q |
| |
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||||| ||||||||||||||||||| ||||| |||||| || |||||||||||||| | || | ||| |||||||| |||||||||||||||||| |
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| T |
5338232 |
aactcaggtttattgatgaaatgaatatcaaggaaaaccccgatttggcggagatgatgttgagcttttcctccaccaaaggctcctccaacactcacta |
5338331 |
T |
|
| Q |
339 |
tggcagcag |
347 |
Q |
| |
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||||||||| |
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| T |
5338332 |
tggcagcag |
5338340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 5e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 10231154 - 10231013
Alignment:
| Q |
21 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
120 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10231154 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10231055 |
T |
|
| Q |
121 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaa |
162 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
10231054 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaa |
10231013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 10239934 - 10239793
Alignment:
| Q |
21 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239934 |
acatcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10239835 |
T |
|
| Q |
121 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaa |
162 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| |
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| T |
10239834 |
tgtcccaaaactttgcaccagtccttgacgaactccctccaa |
10239793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 34 - 162
Target Start/End: Original strand, 10254684 - 10254812
Alignment:
| Q |
34 |
cagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
133 |
Q |
| |
|
|||||||| || |||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254684 |
cagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
10254783 |
T |
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| Q |
134 |
tgcaccagtcctagacgaactccctccaa |
162 |
Q |
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|||||||||||| |||||||||||||||| |
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| T |
10254784 |
tgcaccagtccttgacgaactccctccaa |
10254812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 303
Target Start/End: Original strand, 14535340 - 14535479
Alignment:
| Q |
164 |
ttattcttggcatcttgatcaatcaaatcgccatcaccgttaaattttgctggaggctaaaacgcgtttaagaaaaactcgggtttattgatgaaatgaa |
263 |
Q |
| |
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|||||||| || |||| ||||||||||||||||||| || || ||||| || |||| ||| || ||| || ||||| ||||||||||||||||||| |
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| T |
14535340 |
ttattcttagcctcttcatcaatcaaatcgccatcagtattgaactttgcaggtggctcaaatgctcttataaagaactcaggtttattgatgaaatgaa |
14535439 |
T |
|
| Q |
264 |
gatcaatgaaaacaccaatttggcggagatggtagtgtga |
303 |
Q |
| |
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|||| || ||| |||| |||||| ||||| |||||||| |
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| T |
14535440 |
gatcgatataaattccaacttggcgtagatgatagtgtga |
14535479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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