View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14195_high_12 (Length: 374)

Name: NF14195_high_12
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14195_high_12
NF14195_high_12
[»] chr6 (26 HSPs)
chr6 (1-346)||(22735686-22736034)
chr6 (137-231)||(4844153-4844247)
chr6 (163-247)||(9031760-9031844)
chr6 (140-236)||(22730695-22730792)
chr6 (140-236)||(30833022-30833118)
chr6 (140-211)||(7233995-7234066)
chr6 (157-236)||(20858394-20858473)
chr6 (196-236)||(8176001-8176041)
chr6 (196-236)||(34524880-34524920)
chr6 (157-247)||(5134445-5134536)
chr6 (196-247)||(17176143-17176194)
chr6 (118-180)||(16110964-16111026)
chr6 (199-236)||(8309169-8309206)
chr6 (140-236)||(20149973-20150070)
chr6 (140-236)||(22182762-22182859)
chr6 (118-236)||(22389724-22389840)
chr6 (140-236)||(26669653-26669749)
chr6 (157-236)||(32394030-32394109)
chr6 (198-236)||(1488093-1488131)
chr6 (163-236)||(2945600-2945674)
chr6 (202-247)||(6219348-6219393)
chr6 (143-236)||(30668181-30668274)
chr6 (196-232)||(8253640-8253676)
chr6 (140-236)||(9051285-9051381)
chr6 (196-236)||(10455747-10455787)
chr6 (196-247)||(24470441-24470493)
[»] chr8 (25 HSPs)
chr8 (118-236)||(216119-216237)
chr8 (118-236)||(692679-692797)
chr8 (118-236)||(696888-697006)
chr8 (118-236)||(729742-729860)
chr8 (118-236)||(853637-853755)
chr8 (137-236)||(220353-220452)
chr8 (137-236)||(689508-689607)
chr8 (137-236)||(733976-734075)
chr8 (137-236)||(857872-857971)
chr8 (111-236)||(12560037-12560161)
chr8 (163-236)||(39432345-39432418)
chr8 (140-228)||(22847256-22847344)
chr8 (140-235)||(11900572-11900666)
chr8 (196-236)||(14011088-14011128)
chr8 (196-236)||(26657861-26657901)
chr8 (197-253)||(41793024-41793079)
chr8 (196-235)||(16621550-16621589)
chr8 (140-185)||(25408690-25408735)
chr8 (138-235)||(36593200-36593297)
chr8 (140-181)||(39208863-39208904)
chr8 (196-237)||(43554453-43554494)
chr8 (196-236)||(4955033-4955073)
chr8 (196-236)||(7345433-7345473)
chr8 (196-236)||(29937215-29937255)
chr8 (137-217)||(42711184-42711264)
[»] chr4 (29 HSPs)
chr4 (140-236)||(49039439-49039535)
chr4 (140-236)||(41492493-41492588)
chr4 (140-236)||(54264933-54265029)
chr4 (137-236)||(21023343-21023441)
chr4 (137-236)||(49743367-49743466)
chr4 (137-207)||(47416502-47416572)
chr4 (143-236)||(35230292-35230385)
chr4 (196-236)||(20610744-20610784)
chr4 (140-236)||(54854173-54854269)
chr4 (140-247)||(12585553-12585660)
chr4 (196-234)||(20166323-20166361)
chr4 (196-236)||(12820455-12820496)
chr4 (118-247)||(34370917-34371046)
chr4 (196-236)||(1589207-1589247)
chr4 (196-236)||(4419736-4419776)
chr4 (196-232)||(38657549-38657585)
chr4 (157-236)||(48512203-48512283)
chr4 (140-231)||(6202613-6202704)
chr4 (141-236)||(36045835-36045930)
chr4 (140-231)||(37997840-37997931)
chr4 (196-231)||(42432018-42432053)
chr4 (163-236)||(9084763-9084837)
chr4 (140-236)||(24039893-24039985)
chr4 (196-237)||(31480274-31480316)
chr4 (194-236)||(43049981-43050023)
chr4 (143-236)||(49319398-49319492)
chr4 (199-236)||(56913-56950)
chr4 (196-236)||(36008279-36008320)
chr4 (196-236)||(27921901-27921941)
[»] chr1 (47 HSPs)
chr1 (140-236)||(9768803-9768899)
chr1 (137-236)||(9769571-9769670)
chr1 (140-236)||(43020616-43020712)
chr1 (112-235)||(50575907-50576030)
chr1 (137-235)||(13941325-13941423)
chr1 (163-236)||(5684127-5684199)
chr1 (140-236)||(3341730-3341826)
chr1 (140-236)||(11238022-11238118)
chr1 (114-234)||(41677067-41677187)
chr1 (118-236)||(1721145-1721263)
chr1 (118-236)||(2643787-2643905)
chr1 (198-236)||(47645848-47645886)
chr1 (137-234)||(195051-195148)
chr1 (198-247)||(42801873-42801922)
chr1 (140-237)||(48565141-48565238)
chr1 (196-236)||(18003821-18003861)
chr1 (137-248)||(4511516-4511627)
chr1 (137-236)||(16182814-16182913)
chr1 (137-236)||(18646693-18646790)
chr1 (138-236)||(9410320-9410417)
chr1 (196-234)||(42908778-42908816)
chr1 (139-236)||(4605836-4605932)
chr1 (196-237)||(12489969-12490010)
chr1 (196-237)||(18976007-18976048)
chr1 (196-236)||(4146339-4146379)
chr1 (201-237)||(5862132-5862168)
chr1 (141-185)||(8890082-8890126)
chr1 (196-236)||(18179333-18179373)
chr1 (196-236)||(52961132-52961172)
chr1 (140-231)||(2903021-2903112)
chr1 (194-236)||(47939246-47939289)
chr1 (163-236)||(9527430-9527504)
chr1 (163-236)||(13870098-13870172)
chr1 (198-236)||(28417330-28417368)
chr1 (198-236)||(51917554-51917592)
chr1 (194-235)||(9074002-9074043)
chr1 (195-236)||(37262154-37262195)
chr1 (139-179)||(1576114-1576154)
chr1 (196-236)||(7015737-7015777)
chr1 (196-236)||(7906376-7906416)
chr1 (196-236)||(9004351-9004391)
chr1 (157-236)||(18923896-18923975)
chr1 (196-236)||(23758303-23758343)
chr1 (204-236)||(28284008-28284040)
chr1 (196-236)||(33176153-33176193)
chr1 (140-212)||(41182803-41182874)
chr1 (196-236)||(47141856-47141896)
[»] chr3 (32 HSPs)
chr3 (140-236)||(40160740-40160836)
chr3 (136-235)||(4045624-4045723)
chr3 (137-236)||(28951871-28951970)
chr3 (196-236)||(16874240-16874280)
chr3 (144-236)||(24130564-24130656)
chr3 (137-236)||(3993698-3993797)
chr3 (137-236)||(4010009-4010108)
chr3 (146-236)||(3973307-3973397)
chr3 (146-236)||(3996479-3996569)
chr3 (118-176)||(6054197-6054255)
chr3 (199-237)||(12143460-12143498)
chr3 (197-235)||(51017796-51017834)
chr3 (196-236)||(19137624-19137664)
chr3 (196-236)||(24160578-24160618)
chr3 (200-236)||(30745785-30745821)
chr3 (139-190)||(17262270-17262321)
chr3 (143-230)||(19149435-19149522)
chr3 (137-236)||(23025902-23026001)
chr3 (201-236)||(33533208-33533243)
chr3 (140-231)||(34407084-34407175)
chr3 (197-236)||(51412041-51412080)
chr3 (196-234)||(12236606-12236644)
chr3 (140-230)||(16985031-16985121)
chr3 (118-236)||(31680737-31680854)
chr3 (157-236)||(6951802-6951880)
chr3 (202-231)||(46969008-46969037)
chr3 (196-236)||(23237367-23237407)
chr3 (140-224)||(27119293-27119377)
chr3 (157-225)||(40996882-40996950)
chr3 (157-236)||(41767779-41767859)
chr3 (196-235)||(43774190-43774230)
chr3 (196-236)||(43911619-43911659)
[»] chr2 (26 HSPs)
chr2 (137-236)||(18065259-18065358)
chr2 (137-236)||(36386105-36386203)
chr2 (139-236)||(2057486-2057581)
chr2 (140-236)||(1244574-1244670)
chr2 (137-237)||(29896152-29896252)
chr2 (140-226)||(16310016-16310101)
chr2 (198-235)||(44132615-44132652)
chr2 (140-236)||(18089734-18089830)
chr2 (140-236)||(22355088-22355184)
chr2 (140-236)||(34107279-34107375)
chr2 (196-236)||(36277752-36277792)
chr2 (196-227)||(10602019-10602050)
chr2 (198-237)||(19352870-19352909)
chr2 (155-234)||(32288383-32288462)
chr2 (197-244)||(32944059-32944106)
chr2 (183-230)||(34376553-34376600)
chr2 (194-236)||(6496444-6496486)
chr2 (140-230)||(29713083-29713173)
chr2 (196-237)||(13294434-13294475)
chr2 (138-179)||(28679879-28679920)
chr2 (196-244)||(32527127-32527176)
chr2 (118-170)||(2394945-2394997)
chr2 (196-236)||(5772865-5772905)
chr2 (157-236)||(11133080-11133160)
chr2 (196-232)||(14307744-14307780)
chr2 (111-231)||(39118403-39118523)
[»] scaffold0011 (1 HSPs)
scaffold0011 (139-228)||(19388-19477)
[»] chr5 (23 HSPs)
chr5 (143-236)||(38040271-38040363)
chr5 (140-236)||(7147013-7147109)
chr5 (194-235)||(42781642-42781683)
chr5 (196-236)||(11246544-11246584)
chr5 (196-252)||(25660901-25660957)
chr5 (140-236)||(31556823-31556919)
chr5 (196-236)||(36742017-36742057)
chr5 (138-236)||(42553133-42553230)
chr5 (196-236)||(6806690-6806731)
chr5 (137-238)||(28768600-28768701)
chr5 (155-235)||(31907657-31907737)
chr5 (196-236)||(35813292-35813332)
chr5 (157-235)||(9963421-9963500)
chr5 (196-231)||(17557040-17557075)
chr5 (194-237)||(38040140-38040183)
chr5 (197-236)||(40250228-40250267)
chr5 (150-236)||(16969672-16969758)
chr5 (196-249)||(34325257-34325310)
chr5 (196-232)||(20186875-20186911)
chr5 (137-189)||(22687872-22687924)
chr5 (140-236)||(31280374-31280469)
chr5 (163-215)||(38230222-38230273)
chr5 (137-217)||(39684262-39684342)
[»] chr7 (30 HSPs)
chr7 (140-236)||(10020463-10020559)
chr7 (196-236)||(7465471-7465511)
chr7 (163-231)||(23799310-23799378)
chr7 (196-236)||(24427368-24427408)
chr7 (140-236)||(35498403-35498498)
chr7 (140-216)||(39524713-39524788)
chr7 (161-236)||(8147201-8147276)
chr7 (196-247)||(35195837-35195888)
chr7 (155-236)||(7392315-7392396)
chr7 (138-234)||(11808045-11808142)
chr7 (199-236)||(17305443-17305480)
chr7 (163-236)||(37410498-37410571)
chr7 (196-237)||(37995596-37995636)
chr7 (140-236)||(1649157-1649253)
chr7 (140-236)||(43635593-43635689)
chr7 (157-236)||(10474523-10474602)
chr7 (118-177)||(26734243-26734302)
chr7 (140-227)||(32309142-32309229)
chr7 (196-247)||(38032905-38032956)
chr7 (163-236)||(41139091-41139165)
chr7 (198-235)||(19924773-19924810)
chr7 (196-236)||(21285403-21285444)
chr7 (198-247)||(27726421-27726470)
chr7 (163-236)||(32814832-32814905)
chr7 (196-237)||(43209405-43209446)
chr7 (196-236)||(14772385-14772425)
chr7 (196-236)||(15222837-15222877)
chr7 (196-235)||(20527479-20527519)
chr7 (140-236)||(43712307-43712403)
chr7 (197-253)||(45267977-45268033)
[»] scaffold0712 (1 HSPs)
scaffold0712 (196-236)||(4525-4565)
[»] scaffold0709 (1 HSPs)
scaffold0709 (196-236)||(4545-4585)
[»] scaffold0168 (1 HSPs)
scaffold0168 (196-236)||(34083-34123)
[»] scaffold0219 (1 HSPs)
scaffold0219 (198-252)||(21016-21070)
[»] scaffold0126 (1 HSPs)
scaffold0126 (196-236)||(25011-25051)
[»] scaffold0119 (1 HSPs)
scaffold0119 (140-236)||(1044-1140)
[»] scaffold0054 (1 HSPs)
scaffold0054 (140-236)||(67166-67262)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 22736034 - 22735686
Alignment:
Q  1 acaacccaagtccaaaaccaaatataaaaaacaagccaacatcaactcaactcatatcctactaacacaaataatagagcataacccttaaaacaaataa 100  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22736034 acaacccaagtccaaa-cgaaatataaaaaacaagccaacatcaacgcaactcatatcctactaacacaaataatagagcataacccttaaaacaaataa 22735936  T
Q  101 gatgtgtccactatttcttttgtc----agatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaac 196  Q
    |||||||||||||||| |||| ||    ||||||||||  |||||||||||||||||| |||||||||||||||||||||||| ||||||||||  | ||    
T  22735935 gatgtgtccactattttttttttctttcagatagactactggttagaattcacctttcccaaggtaaataagtgaggtgtccgggattcaaaccccagac 22735836  T
Q  197 cctgcatataacaatgcatgtctctgccaactgagctatgtctacggggacgatatgtccactattaataaagctcaatgctataaccaccatgcaacaa 296  Q
    ||||||||||||||| |||||||||| |||||||| |||| | |||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  22735835 cctgcatataacaatacatgtctctgtcaactgagttatgccaacggagacaatatgtcaactattaatgaagctcaatgctataaccaccatgcaacaa 22735736  T
Q  297 ttaatggaactctcatcttgttctttcttctgaattcaaaatactaaagt 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22735735 ttaatggaactctcatcttgttctttcttctgaattcaaaatactaaagt 22735686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 231
Target Start/End: Complemental strand, 4844247 - 4844153
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgag 231  Q
    ||||||||||||| ||| ||||||| ||||||||||||||| ||| || |||||   | ||||||||||||||||||||||| ||||||||||||    
T  4844247 ggttagaattcacttttttcaaggtgaataagtgaggtgtctgaggtttaaaccccgacccctgcatataacaatgcatgtccctgccaactgag 4844153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 9031844 - 9031760
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatgtctacggggac 247  Q
    |||||||| |||||| ||| |||||||   || ||||||||||||||||||||||| ||||||||||||||||||  ||||||||    
T  9031844 aataagtggggtgtctgaggttcaaacttcaagccctgcatataacaatgcatgtccctgccaactgagctatgttcacggggac 9031760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 22730695 - 22730792
Alignment:
Q  140 tagaattcacctt-tctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||| | | ||||| |||||||| |||||||||| ||| |||   |  |||||||||||||||||||||||||||||||||||| ||||    
T  22730695 tagaattcaccttattttaaggtgaataagtggggtgtccgaggttcgaacttcagtccctgcatataacaatgcatgtctctgccaactgagttatg 22730792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 30833118 - 30833022
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||| ||||| ||||||  |||||||| |||||||| | ||| ||||   | ||||||||||||||||||||||| ||||||||||| |||||    
T  30833118 tagaattctcctttttcaaggagaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgaactatg 30833022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 7234066 - 7233995
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaat 211  Q
    |||||||||||||| ||||||| |||||||| |||||||||| ||||||||  |  ||||||||||||||||    
T  7234066 tagaattcacctttttcaaggtgaataagtggggtgtccgaggttcaaaccccagcccctgcatataacaat 7233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 20858394 - 20858473
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||| || ||||||||  |||| ||||  || ||||||||||||||||||||||| |||||||||||| ||||    
T  20858394 aaggtaaataaatggggtgtccggaattcgaaccccaacccctgcatataacaatgcatgtccctgccaactgagttatg 20858473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 8176041 - 8176001
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  8176041 ccctgcatataacaatgcatgtctctgtcaactgagctatg 8176001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 34524920 - 34524880
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  34524920 ccctgcatataacaatgcatgtccctgccaactgagctatg 34524880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 247
Target Start/End: Original strand, 5134445 - 5134536
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcat-gtctctgccaactgagctatgtctacggggac 247  Q
    ||||| |||||||| |||||| ||| ||| |||||    | |||||||||||||||||| |||||||||||||||||||||  |||||||||    
T  5134445 aaggtgaataagtggggtgtctgaggttcgaaccgcggcctctgcatataacaatgcattgtctctgccaactgagctatgcttacggggac 5134536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 17176194 - 17176143
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgtctacggggac 247  Q
    ||||||||||||||||||||||| ||| |||||||||||||| |||| ||||    
T  17176194 ccctgcatataacaatgcatgtccctgtcaactgagctatgtttacgaggac 17176143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 16110964 - 16111026
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccga 180  Q
    |||||| |||||  |||| | ||||||||||||||| ||||| ||||||||||||||||||||    
T  16110964 ttttgtaagataacctattgattagaattcacctttttcaagataaataagtgaggtgtccga 16111026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 8309206 - 8309169
Alignment:
Q  199 tgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8309206 tgcatataacaatgcatgtccctgccaactgagctatg 8309169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 20149973 - 20150070
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtcc-gagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| ||||||| | | ||| ||||  || |||| |||||||||| ||| ||| || ||||||||||||||    
T  20149973 tagaattcacctttttcaaggtgaataagtggggtgtccaggggttcgaaccccaatccctacatataacaacgcaagtccctcccaactgagctatg 20150070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 22182859 - 22182762
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtcc-gagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| ||||||| | | ||| ||||  || |||| |||||||||| ||| ||| || ||||||||||||||    
T  22182859 tagaattcacctttttcaaggtgaataagtggggtgtccaggggttcgaaccccaatccctacatataacaacgcaagtccctcccaactgagctatg 22182762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 22389724 - 22389840
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tg 216  Q
    ||||||||| ||| ||| ||| |||||||||||||    ||||| |||||||| |||||||| ||||| |||| | | |||||||||||| |||||| ||    
T  22389724 ttttgtcaggtagtctagcggctagaattcaccttat--aaggtgaataagtggggtgtccgggattcgaaccctgacccctgcatataataatgcattg 22389821  T
Q  217 tctctgccaactgagctatg 236  Q
    || || ||||||||||||||    
T  22389822 tc-ctaccaactgagctatg 22389840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 26669653 - 26669749
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| |||||| | | ||| ||||  |  |||| |||||||  ||||||||| || ||||||||||||||    
T  26669653 tagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccctaccaactgagctatg 26669749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 32394109 - 32394030
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| |||||||| |||||||| ||||||||||  || | |||||||  ||||| |||||| |||||||||||| ||||    
T  32394109 aaggtgaataagtggggtgtccgggattcaaacctcaacctctgcataagacaatacatgtccctgccaactgagttatg 32394030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 1488131 - 1488093
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  1488131 ctgcatataacaatgcatgtctctgccaattgagatatg 1488093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 2945674 - 2945600
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    |||||||| |||||||||| ||  ||||   | ||||||||||||||||||| |||| |||||||||||||||||    
T  2945674 aataagtggggtgtccgaggtttgaaccccgacccctgcatataacaatgcattgtccctgccaactgagctatg 2945600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 247
Target Start/End: Complemental strand, 6219393 - 6219348
Alignment:
Q  202 atataacaatgcatgtctctgccaactgagctatgtctacggggac 247  Q
    |||||| |||||||||| ||||||||||||||||||  ||||||||    
T  6219393 atataataatgcatgtccctgccaactgagctatgttcacggggac 6219348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 30668181 - 30668274
Alignment:
Q  143 aattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||| ||| | ||||| |||||||| ||||| || | ||| |||  | | |||||||||||| ||||||||||| ||||||||||| ||||    
T  30668181 aattcacattttttaaggtgaataagtggggtgttcgtggttcgaactctgacccctgcatataataatgcatgtctatgccaactgagttatg 30668274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 8253640 - 8253676
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagc 232  Q
    |||||||||||||||||||||||  ||||||||||||    
T  8253640 ccctgcatataacaatgcatgtccatgccaactgagc 8253676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 9051285 - 9051381
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||| ||||| |||||   |||||||||| |||||| | ||| |||| ||  |||| ||||||||||||||| ||  |||||| |||||||||    
T  9051285 tagaattctcctttttcaagacgaataagtgagttgtccggggttcgaaccctagtccctacatataacaatgcatatccttgccaattgagctatg 9051381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 10455787 - 10455747
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||  ||||||||||| |||||    
T  10455787 ccctgcatataacaatgcatgttcctgccaactgaactatg 10455747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 24470441 - 24470493
Alignment:
Q  196 ccctgcatataacaatgcat-gtctctgccaactgagctatgtctacggggac 247  Q
    ||||| |||||| ||||||| |||||||||||||||||||||  |||||||||    
T  24470441 ccctgtatataataatgcattgtctctgccaactgagctatgcttacggggac 24470493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 216119 - 216237
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||| ||| |||  |||||| |||||||||| ||||||| ||||||||||||||||| ||||| |||| | | | ||||||||||||||| ||||    
T  216119 ttttgtcaggtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgt 216218  T
Q  218 ctctgccaactgagctatg 236  Q
    | |||||||||||||||||    
T  216219 ccctgccaactgagctatg 216237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 692679 - 692797
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||| ||| |||  |||||| |||||||||| ||||||| ||||||||||||||||| ||||| |||| | | | ||||||||||||||| ||||    
T  692679 ttttgtcaggtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgt 692778  T
Q  218 ctctgccaactgagctatg 236  Q
    | |||||||||||||||||    
T  692779 ccctgccaactgagctatg 692797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 696888 - 697006
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||| ||| |||  |||||| |||||||||| ||||||| ||||||||||||||||| ||||| |||| | | | ||||||||||||||| ||||    
T  696888 ttttgtcaggtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgt 696987  T
Q  218 ctctgccaactgagctatg 236  Q
    | |||||||||||||||||    
T  696988 ccctgccaactgagctatg 697006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 729742 - 729860
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||| ||| |||  |||||| |||||||||| ||||||| ||||||||||||||||| ||||| |||| | | | ||||||||||||||| ||||    
T  729742 ttttgtcaggtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgt 729841  T
Q  218 ctctgccaactgagctatg 236  Q
    | |||||||||||||||||    
T  729842 ccctgccaactgagctatg 729860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 853637 - 853755
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||| ||| |||  |||||| |||||||||| ||||||| ||||||||||||||||| ||||| |||| | | | ||||||||||||||| ||||    
T  853637 ttttgtcaggtagtctagtggttagtattcacctttttcaaggtgaataagtgaggtgtccgtgattcgaaccctgacctctgcatataacaatgtatgt 853736  T
Q  218 ctctgccaactgagctatg 236  Q
    | |||||||||||||||||    
T  853737 ccctgccaactgagctatg 853755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 220353 - 220452
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| ||||||| |||||||| |||||||| ||||| |||| | | | |||||||||||| |||||||| |||||||||||||||||    
T  220353 ggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatg 220452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 689508 - 689607
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| ||||||| |||||||| |||||||| ||||| |||| | | | |||||||||||| |||||||| |||||||||||||||||    
T  689508 ggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatg 689607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 733976 - 734075
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| ||||||| |||||||| |||||||| ||||| |||| | | | |||||||||||| |||||||| |||||||||||||||||    
T  733976 ggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatg 734075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 857872 - 857971
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| ||||||| |||||||| |||||||| ||||| |||| | | | |||||||||||| |||||||| |||||||||||||||||    
T  857872 ggttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatg 857971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 236
Target Start/End: Complemental strand, 12560161 - 12560037
Alignment:
Q  111 ctatttcttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaa 210  Q
    |||||| ||||||||  ||| |||  || ||||||| |||||| ||||||||||||||||||||||  ||| ||| ||||  || |||||||||||||||    
T  12560161 ctattttttttgtcaagtagtctaatggctagaattgacctttttcaaggtaaataagtgaggtgtttgaggttcgaaccccaacccctgcatataacaa 12560062  T
Q  211 tgcatgtctctgccaactgagctatg 236  Q
    ||  |||  |||||||||||||||||    
T  12560061 tg-ttgttcctgccaactgagctatg 12560037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 39432345 - 39432418
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||| |||||| ||| ||| ||||  || |||||||||||||| |||||||| |||||||||||||||||    
T  39432345 aataagtggggtgtctgaggttcgaaccccaacccctgcatataacattgcatgtccctgccaactgagctatg 39432418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 22847256 - 22847344
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaact 228  Q
    |||||||||||||| | ||||| ||||||||||||||  | | ||| ||||   | ||||||||||||||||||||||| |||||||||    
T  22847256 tagaattcaccttttttaaggtgaataagtgaggtgtgtggggttcgaacctcgacccctgcatataacaatgcatgtccctgccaact 22847344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 235
Target Start/End: Complemental strand, 11900666 - 11900572
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    |||||||||||||| ||||| | |||||||| ||| || | | ||||||||  || |||||||||||| |||||||||  ||||||||||||||||    
T  11900666 tagaattcacctttttcaagatgaataagtggggtatctgtg-ttcaaacctcaacccctgcatataataatgcatgttcctgccaactgagctat 11900572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 14011088 - 14011128
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  14011088 ccctgcatataacaatgcatgtccctgccaactgaactatg 14011128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 26657901 - 26657861
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| || ||||||||||||||    
T  26657901 ccctgcatataacaatgcatgtccctaccaactgagctatg 26657861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 41793024 - 41793079
Alignment:
Q  197 cctgcatataacaatgcatgtctctgccaactgagctatgtctacggggacgatatg 253  Q
    |||||||||||||||||||||| ||||||| |||||||||   ||||||||||||||    
T  41793024 cctgcatataacaatgcatgtc-ctgccaattgagctatgctcacggggacgatatg 41793079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 16621589 - 16621550
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  16621589 ccctgcatataataatgcatatctctgccaactgagctat 16621550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 25408690 - 25408735
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattc 185  Q
    |||||||||||||  ||||||||||  |||||||||||||||||||    
T  25408690 tagaattcaccttcttcaaggtaaaacagtgaggtgtccgagattc 25408735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 36593297 - 36593200
Alignment:
Q  138 gttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    |||||||||||| ||| | ||||| |||||||  | ||||  |||||| ||||  || | ||| ||||||||||||||||| || |||||||||||||    
T  36593297 gttagaattcacattttttaaggtgaataagttggatgtctaagattcgaaccccaacctctgtatataacaatgcatgtccctaccaactgagctat 36593200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 39208863 - 39208904
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgag 181  Q
    |||||||||||||| | ||||| |||||||||||||||||||    
T  39208863 tagaattcacctttttaaaggtgaataagtgaggtgtccgag 39208904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 43554494 - 43554453
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    |||| |||||||||||| ||||| ||||||||||||||||||    
T  43554494 ccctacatataacaatggatgtcgctgccaactgagctatgt 43554453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 4955033 - 4955073
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||| |||||||||||||| |||| ||||    
T  4955033 ccctgcatataacaatacatgtctctgccaattgagttatg 4955073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 7345473 - 7345433
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| |||||||||| |||||||||||| ||||    
T  7345473 ccctgcatataataatgcatgtccctgccaactgagttatg 7345433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 29937255 - 29937215
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||| |||||| || ||||||||||||||    
T  29937255 ccctgcatataacaatacatgtccctaccaactgagctatg 29937215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 42711264 - 42711184
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||||||| ||| |||||| ||||||||| | ||||||   |||||| | | | ||||||||||||||||| ||||    
T  42711264 ggttagaattcacatttttcaaggcaaataagtgggatgtccggagttcaaatcctgacccctgcatataacaatgtatgt 42711184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 49039439 - 49039535
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| |||||||| | ||| ||||  |  ||||||||||||||||||||||| |||||||||||||||||    
T  49039439 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccagtccctgcatataacaatgcatgtccctgccaactgagctatg 49039535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 41492493 - 41492588
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| |||||||||||||||| ||||||| || ||| ||||     |||||||||||| |||||||||| |||||||||||||||||    
T  41492493 tagaattcacctttttcaaggtaaataagtggggtgtcc-aggttcgaaccccggcccctgcatataataatgcatgtccctgccaactgagctatg 41492588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 54265029 - 54264933
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||| |||| ||||||| |||||||||||||| |||| ||  |||| | | |||| ||||||||||||||||| ||||||| ||||||||||    
T  54265029 tagaattcatctttttcaaggtgaataagtgaggtgttcgaggtttgaaccctgacccctacatataacaatgcatgtttctgccagctgagctatg 54264933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 21023343 - 21023441
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| ||||||| |||||||| |||||| | | ||| ||||  || ||| | |||||||||||||||| ||||||||||||||||||    
T  21023343 ggttagaattcacctttttcaaggtgaataagtggggtgtcgggggttcgaaccccaaccccgg-atataacaatgcatgtttctgccaactgagctatg 21023441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 49743466 - 49743367
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| | ||| || |     |||||||||||| ||||||| || ||||||||||| |||||    
T  49743466 ggttaaaattcacctttttcaaggtaaataagtgaggtgtccggggttcgaatcccggcccctgcatataataatgcatatccctgccaactgaactatg 49743367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 47416572 - 47416502
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataa 207  Q
    ||||||||||||||||| |||| || |||||||| |||||||||||||| ||||  || ||||||||||||    
T  47416572 ggttagaattcacctttttcaaagtgaataagtggggtgtccgagattcgaaccccaacccctgcatataa 47416502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 35230292 - 35230385
Alignment:
Q  143 aattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||| | |||||||||||||||| |||||||||| ||| ||||   | || |||||||| |||||||| || || ||||||||||||||    
T  35230292 aattcacctatttcaaggtaaataagtggggtgtccgaggttcgaaccccgacccatgcatatagcaatgcatatccctaccaactgagctatg 35230385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 20610784 - 20610744
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  20610784 ccctgcatataacaatgcatgtccctgccaactgagctatg 20610744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 54854173 - 54854269
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||| ||| ||||||| |||||||| | |||||| | ||| ||||  |  ||||||||||||  ||||||||| |||||||||||||||||    
T  54854173 tagaattcacttttttcaaggtgaataagtgtgatgtccggggttcgaaccccagcccctgcatataattatgcatgtccctgccaactgagctatg 54854269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 247
Target Start/End: Original strand, 12585553 - 12585660
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatgtct 239  Q
    |||||||||||||| ||||| | |||||||||||||| || | ||| |||      || | |||||||||||||||||| |||||||||||| ||||| |    
T  12585553 tagaattcacctttttcaagatgaataagtgaggtgttcggggttcgaactccggcccttacatataacaatgcatgtccctgccaactgagttatgttt 12585652  T
Q  240 acggggac 247  Q
    ||||||||    
T  12585653 acggggac 12585660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 20166361 - 20166323
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagcta 234  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  20166361 ccctgcatataacaatgcatgtccctgccaactgagcta 20166323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 12820455 - 12820496
Alignment:
Q  196 ccctgcatataacaatgcat-gtctctgccaactgagctatg 236  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  12820455 ccctgcatataacaatgcattgtctctgccaactgagctatg 12820496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 34371046 - 34370917
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    |||| |||||||| |||| || || |||||  |||| ||||||  |||||||| ||||  ||| |||||||||   | ||||||||| ||||||||||||    
T  34371046 ttttatcagatagcctattggctaaaattcttctttttcaaggagaataagtggggtgatcgaaattcaaacctcgacccctgcatacaacaatgcatgt 34370947  T
Q  218 ctctgccaactgagctatgtctacggggac 247  Q
    ||||| |||| || |||||| || ||||||    
T  34370946 ctctgtcaaccgaactatgtttatggggac 34370917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 1589207 - 1589247
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  1589207 ccctgcatataacaatgcatgtcaccgccaactgagctatg 1589247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 4419736 - 4419776
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  4419736 ccctgcatataacaatgcatgtctctgacaactgagttatg 4419776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 38657585 - 38657549
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagc 232  Q
    ||||||||||||||||||||||| |||||||||||||    
T  38657585 ccctgcatataacaatgcatgtccctgccaactgagc 38657549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 48512283 - 48512203
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||| |||||||| |||||||| | | | |||| ||  ||||||||||||||||||| |||| |||||||||||||||||    
T  48512283 aaggtgaataagtggggtgtccggggtacgaaccctagcccctgcatataacaatgcattgtccctgccaactgagctatg 48512203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 231
Target Start/End: Complemental strand, 6202704 - 6202613
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgag 231  Q
    |||||||||||||| ||||| | |||||||  |||||||| | ||| |||| ||  |||| |||| ||||| ||||||| ||||||||||||    
T  6202704 tagaattcacctttttcaagatgaataagtagggtgtccggggttcgaaccctagcccctacataaaacaaagcatgtcgctgccaactgag 6202613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 36045930 - 36045835
Alignment:
Q  141 agaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||| ||||  | | |||||||||||||||   ||| || |  || ||||||||||||||||||||||| ||| ||| |||||||||    
T  36045930 agaattcacctttttcaatatgactaagtgaggtgtccggagttcgaatctcaacccctgcatataacaatgcatgtccctgtcaattgagctatg 36045835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 37997840 - 37997931
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgag 231  Q
    ||||||||| | || | ||||| |||||||| |||||| | | ||| ||||  | |||||||||||||||||| ||||| ||||||||||||    
T  37997840 tagaattcatcctttttaaggtgaataagtggggtgtctggggttcgaaccccagaccctgcatataacaatgaatgtccctgccaactgag 37997931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 42432053 - 42432018
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgag 231  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42432053 ccctgcatataacaatgcatgtccctgccaactgag 42432018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 9084837 - 9084763
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    |||||||| |||||||||| ||| || |   | ||||||||||||||||||| |||| |||||||||||||||||    
T  9084837 aataagtggggtgtccgaggttcgaatcccgacccctgcatataacaatgcattgtccctgccaactgagctatg 9084763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 24039985 - 24039893
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||||||||| || | ||| ||||   | ||   |||||||||||||||||| ||| |||||||||||||    
T  24039985 tagaattcacctttttcaaggtgaataagtgaggtgttcggggttcgaaccccgaccc---catataacaatgcatgtc-ctgtcaactgagctatg 24039893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 31480316 - 31480274
Alignment:
Q  196 ccctgcatataacaatgca-tgtctctgccaactgagctatgt 237  Q
    ||||||||||||||||||| |||| ||||||||||||||||||    
T  31480316 ccctgcatataacaatgcattgtccctgccaactgagctatgt 31480274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 43049981 - 43050023
Alignment:
Q  194 aaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||||  ||| |||||||||||||    
T  43049981 aaccctgcatataacaatgcatgttcctgtcaactgagctatg 43050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 49319492 - 49319398
Alignment:
Q  143 aattcacctttct-caaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||| | |||||| |||||||| |||||||| | ||  ||||   | |||||||||||| ||||||||||  ||||||||||||||||    
T  49319492 aattcaccttttttcaaggtgaataagtggggtgtccggggttggaaccccgacccctgcatataataatgcatgtccatgccaactgagctatg 49319398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 56913 - 56950
Alignment:
Q  199 tgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  56913 tgcatataacaatgcatgtccctgccaactgagttatg 56950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 36008320 - 36008279
Alignment:
Q  196 ccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  36008320 ccctgcatataacaatgcattgtccctgccaactgagctatg 36008279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 27921941 - 27921901
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| |||||||||| || ||||||||||||||    
T  27921941 ccctgcatataataatgcatgtccctaccaactgagctatg 27921901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 47)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 9768803 - 9768899
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| |||||||| | ||| ||||   | ||||||||||||||||||||||| |||||||||||||||||    
T  9768803 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatg 9768899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 9769571 - 9769670
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| ||||||| |||||||| |||||||| | ||| ||||  || |||| ||||||| |||||||||| |||||||||||||||||    
T  9769571 ggttagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaaccccaatccctacatataataatgcatgtccctgccaactgagctatg 9769670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 43020712 - 43020616
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||| ||| ||||||| ||| |||| |||||||||| ||| ||||  || |||||||||||| |||||||||| |||||||| ||||||||    
T  43020712 tagaattcacatttttcaaggtgaatgagtggggtgtccgaggttcgaaccccaacccctgcatataataatgcatgtccctgccaaccgagctatg 43020616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 235
Target Start/End: Complemental strand, 50576030 - 50575907
Alignment:
Q  112 tatttcttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaat 211  Q
    ||||| ||||||||  ||| ||| ||| || ||||||||||| | ||||| ||||||||||||||| ||| ||| ||||  |  || |||||||||||||    
T  50576030 tattttttttgtcaagtagcctaacggctataattcaccttttttaaggtgaataagtgaggtgtctgaggttcgaaccccagcccttgcatataacaat 50575931  T
Q  212 gcatgtctctgccaactgagctat 235  Q
    ||||||| || |||||||||||||    
T  50575930 gcatgtcccttccaactgagctat 50575907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 13941423 - 13941325
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    ||||||||||||| ||| ||||| | |||||||| |||||||||  ||| ||||   |||||||||||||||||||||||||  |||||||||| ||||    
T  13941423 ggttagaattcacttttttcaagatgaataagtggggtgtccgaagttcgaacctcgaaccctgcatataacaatgcatgtccttgccaactgaactat 13941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 5684199 - 5684127
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||| |||||| ||| ||||| || ||| |||||||||||| ||||||||||||||||||||||||||||    
T  5684199 aataagtggggtgtctgaggttcaatcc-taacccctgcatataataatgcatgtctctgccaactgagctatg 5684127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 3341730 - 3341826
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| |||||||| | ||| | ||     |||||||||||| |||||||||| |||||||||||||||||    
T  3341730 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgatccccggcccctgcatataataatgcatgtccctgccaactgagctatg 3341826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 11238022 - 11238118
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||| | |||||||| |||||||| ||||| ||||   | |||||||||||| ||||||||||  ||||| ||||||||||    
T  11238022 tagaattcacctttttcaagatgaataagtggggtgtccgggattcgaaccccgacccctgcatataataatgcatgtccatgccatctgagctatg 11238118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 41677187 - 41677067
Alignment:
Q  114 tttcttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgc 213  Q
    |||||||| |||| ||| |||  || |||||||||||||| ||||||| |||||||| ||||||||   ||| ||||   | ||| |||||||| ||||     
T  41677187 tttcttttttcaggtagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtccggagttcgaaccccgacccccgcatataataatga 41677088  T
Q  214 atgtctctgccaactgagcta 234  Q
    |||||||||||||||||||||    
T  41677087 atgtctctgccaactgagcta 41677067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 1721263 - 1721145
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||  ||| ||| ||| |||||||||||||| | ||||| ||||||||||||||||| | ||| || |     ||||||||||||||||||||||    
T  1721263 ttttgtcaagtagcctaacggctagaattcaccttttttaaggtgaataagtgaggtgtccggggttcgaaacccggcccctgcatataacaatgcatgt 1721164  T
Q  218 ctctgccaactgagctatg 236  Q
      || ||||||||||||||    
T  1721163 tcctaccaactgagctatg 1721145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 2643787 - 2643905
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||| ||| |||  ||||||| ||||| ||| | ||||| |||||||| |||||| | | ||||||||   | || ||||||||| |||||||||    
T  2643787 ttttgtcaggtagtctagtggttagagttcacattttttaaggtgaataagtggggtgtctggggttcaaaccccgacccatgcatataataatgcatgt 2643886  T
Q  218 ctctgccaactgagctatg 236  Q
    ||||||||||| |||||||    
T  2643887 ctctgccaactaagctatg 2643905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 47645848 - 47645886
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||||||||||||||||||||||    
T  47645848 ctgcatataacaatgcatgtctctgccaactgagctatg 47645886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 195148 - 195051
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagcta 234  Q
    ||||||||||||||||| ||||||| |||||||| |||||| | | | | ||||  |  ||||||||||||  ||||||||| |||||||||||||||    
T  195148 ggttagaattcacctttttcaaggtgaataagtggggtgtctggggtacgaacctcagcccctgcatataattatgcatgtccctgccaactgagcta 195051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 42801922 - 42801873
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatgtctacggggac 247  Q
    ||||||||||||||||||||||||| ||||||||||||||  ||||||||    
T  42801922 ctgcatataacaatgcatgtctctgtcaactgagctatgttcacggggac 42801873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 237
Target Start/End: Original strand, 48565141 - 48565238
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    |||||||||||||| |||| ||||||||||| |||||||||| ||| || | ||  || ||||||||||||||  | || |||||||||||| |||||    
T  48565141 tagaattcacctttttcaaagtaaataagtggggtgtccgaggttcgaaacttagtccttgcatataacaatgtttatccctgccaactgagatatgt 48565238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 18003861 - 18003821
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  18003861 ccctgcatataacaatgcatgtccctgccaactgagctatg 18003821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 248
Target Start/End: Original strand, 4511516 - 4511627
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| | ||||| |||||||| |  ||||| |||||||||    | |||||||||||| ||||||||||  |||||| |||| ||||    
T  4511516 ggttagaattcaccttttttaaggtgaataagtgggacgtccgggattcaaacaccgacccctgcatataataatgcatgtccttgccaattgagttatg 4511615  T
Q  237 tctacggggacg 248  Q
    |  |||||||||    
T  4511616 ttcacggggacg 4511627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 16182913 - 16182814
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||  ||| ||||| | |||||||| |||||||| | ||  ||||  |  |||| ||||||| ||||||||||||||||||||||||||||    
T  16182913 ggttagaattcatatttttcaagatgaataagtggggtgtccggggtttgaaccccagcccctacatataataatgcatgtctctgccaactgagctatg 16182814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 18646790 - 18646693
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| |||| | ||||||||| ||||| ||   ||||||||| || |||||||||| ||||||||||||  ||||||||||| ||||    
T  18646790 ggttagaattcacctttttcaaagaaaataagtg-ggtgttcggagttcaaaccgcaa-ccctgcatatcacaatgcatgtccatgccaactgagttatg 18646693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 9410320 - 9410417
Alignment:
Q  138 gttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| ||||||||||| ||||| | |||||||| |||||| ||| ||| || | | ||||||||||||||| |||||||||  |||||||||| |||||    
T  9410320 gttaaaattcacctttttcaagatgaataagtggggtgtctgaggttcgaatc-tcaaccctgcatataactatgcatgtccttgccaactgaactatg 9410417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 42908816 - 42908778
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagcta 234  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  42908816 ccctgcatataacaatgcatgtccctgccaactgagcta 42908778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 4605836 - 4605932
Alignment:
Q  139 ttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||| | ||||| ||||| ||||||||| ||| ||  |||  |   ||||||||||||||||||||||||||| |||||||| ||||    
T  4605836 ttagaattcaccttttttaaggtgaataaatgaggtgtctgaggtttgaact-tggcccctgcatataacaatgcatgtctctgtcaactgagttatg 4605932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 12489969 - 12490010
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  12489969 ccctgcatataaaaatgcatgtctttgccaactgagctatgt 12490010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 18976048 - 18976007
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    ||||||||||||||||||||||||||| ||| ||||||||||    
T  18976048 ccctgcatataacaatgcatgtctctgacaattgagctatgt 18976007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 4146379 - 4146339
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  4146379 ccctgcatataacaatgcatgtttctgtcaactgagctatg 4146339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 5862168 - 5862132
Alignment:
Q  201 catataacaatgcatgtctctgccaactgagctatgt 237  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5862168 catataacaatgcatgtccctgccaactgagctatgt 5862132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 8890082 - 8890126
Alignment:
Q  141 agaattcacctttctcaaggtaaataagtgaggtgtccgagattc 185  Q
    ||||||||| |||||||||||||||||||||||| |||| |||||    
T  8890082 agaattcacatttctcaaggtaaataagtgaggtatccgggattc 8890126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 18179373 - 18179333
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  18179373 ccctgcatataacaatgcatgtccctgccaactgagttatg 18179333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 52961132 - 52961172
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  52961132 ccctgcatataacaatgcatgtccttgccaactgagctatg 52961172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 2903021 - 2903112
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgag 231  Q
    |||||||| ||||| ||||||| |||||||| ||||| || | ||| ||||   | | ||||||||||||||||||||| ||| ||||||||    
T  2903021 tagaattctcctttttcaaggtgaataagtggggtgttcggggttcgaaccccgacctctgcatataacaatgcatgtccctggcaactgag 2903112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 236
Target Start/End: Original strand, 47939246 - 47939289
Alignment:
Q  194 aaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||| |||| |||||||||||||||||    
T  47939246 aaccctgcatataacaatgcattgtccctgccaactgagctatg 47939289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 9527504 - 9527430
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    |||||||| |||||||  | ||||||||   | ||||||||||||||||||| |||| |||||||||||||||||    
T  9527504 aataagtggggtgtccagggttcaaaccccgacccctgcatataacaatgcattgtccctgccaactgagctatg 9527430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 13870098 - 13870172
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcat-gtctctgccaactgagctatg 236  Q
    |||||||| |||||||| ||||||||||     |||||||||||| ||||||| ||| |||||||||||||||||    
T  13870098 aataagtggggtgtccgggattcaaaccccggcccctgcatataataatgcattgtccctgccaactgagctatg 13870172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 28417330 - 28417368
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  28417330 ctgcatataagaatgcatgtctctgccaactgagttatg 28417368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 236
Target Start/End: Original strand, 51917554 - 51917592
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  51917554 ctgcatataataatgcatgtctatgccaactgagctatg 51917592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 9074043 - 9074002
Alignment:
Q  194 aaccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    ||||||||||||||||||| ||||| ||| ||||||||||||    
T  9074043 aaccctgcatataacaatgtatgtccctgtcaactgagctat 9074002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 37262154 - 37262195
Alignment:
Q  195 accctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||| ||||||| ||||||||||| |||||    
T  37262154 accctgcatataacaacgcatgtccctgccaactgaactatg 37262195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 1576114 - 1576154
Alignment:
Q  139 ttagaattcacctttctcaaggtaaataagtgaggtgtccg 179  Q
    ||||||||||| ||| |||||||||||||||| ||||||||    
T  1576114 ttagaattcacttttttcaaggtaaataagtggggtgtccg 1576154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 7015737 - 7015777
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  7015737 ccctacatataacaatgcatgtcccagccaactgagctatg 7015777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 7906376 - 7906416
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| || |||||||| |||||    
T  7906376 ccctgcatataacaatgcatgtccctaccaactgaactatg 7906416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 9004391 - 9004351
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  9004391 ccctgcatataacaatatatgtccctgccaactgagctatg 9004351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 18923896 - 18923975
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||| |||| ||| |||||||||| ||| |||| | |||||||||||||| |||||| |||| || ||||||||||||||    
T  18923896 aaggtgaatacgtggggtgtccgaggttcgaaccctgaaccctgcatataataatgcattgtc-ctaccaactgagctatg 18923975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 23758303 - 23758343
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| |||||| || ||||||||||||||||||    
T  23758303 ccctgcatataataatgcacgtttctgccaactgagctatg 23758343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 28284008 - 28284040
Alignment:
Q  204 ataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| ||||||||||||||||||||||||||||    
T  28284008 ataataatgcatgtctctgccaactgagctatg 28284040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 33176153 - 33176193
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  33176153 ccctgcatataacaatgcatatccctaccaactgagctatg 33176193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 41182874 - 41182803
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatg 212  Q
    |||||||||||||| |||| || |||||||| |||||||| | ||||||||   | |||||||||||||||||    
T  41182874 tagaattcaccttt-tcaaagtgaataagtggggtgtccggggttcaaaccccgacccctgcatataacaatg 41182803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 47141856 - 47141896
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| ||| |||||||| ||||    
T  47141856 ccctgcatataacaatgcatgtccctgtcaactgagttatg 47141896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 40160836 - 40160740
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| | ||||| |||||||| |||||||| | ||||||||  |  ||| ||||||||||||||||||| ||||||| |||||||||    
T  40160836 tagaattcacctttttaaaggtgaataagtggggtgtccggggttcaaaccccagccccggcatataacaatgcatgtccctgccaattgagctatg 40160740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 136 - 235
Target Start/End: Original strand, 4045624 - 4045723
Alignment:
Q  136 cggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    |||||||||||||||||| ||||| | |||||||| |||||||||  ||| ||||   | ||||||||||||||||||||||| ||| ||||||| ||||    
T  4045624 cggttagaattcacctttttcaagatgaataagtggggtgtccgaagttcgaacctcgacccctgcatataacaatgcatgtccctgtcaactgaactat 4045723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 28951970 - 28951871
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||| ||| ||||||| |||||||| ||||| || | ||| |||| | | |||||||||||| ||||||||| ||||||||||||| ||||    
T  28951970 ggttagaattcacatttttcaaggtgaataagtggggtgttcggggttcgaaccctgacccctgcatataataatgcatgtatctgccaactgagttatg 28951871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 16874240 - 16874280
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  16874240 ccctgcatataacaatgcatgtccctgccaactgagctatg 16874280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 24130656 - 24130564
Alignment:
Q  144 attcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| |||| ||||||| |||||||| |||||||| | ||||||||     ||||||||||||||||| ||||| |||||||||||| ||||    
T  24130656 attcaactttttcaaggtgaataagtggggtgtccggggttcaaaccccgtcccctgcatataacaatgtatgtccctgccaactgagttatg 24130564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 3993698 - 3993797
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| || |||| ||  |||| || |||||||| | |||||||||    ||||||||||||||||||||||| ||  |||||||||||||    
T  3993698 ggttagaattcaccattttcaaagtgcataaatggggtgtccggggttcaaaccgcggcccctgcatataacaatgcatgtccctctcaactgagctatg 3993797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 4010009 - 4010108
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| | || ||||||| ||||| || ||||| || | ||||||| |    ||||||||||||||||||||||| || ||||||||||||||    
T  4010009 ggttagaattcaacattttcaaggtgaataaatggggtgttcggggttcaaactgcggcccctgcatataacaatgcatgtccctaccaactgagctatg 4010108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Complemental strand, 3973397 - 3973307
Alignment:
Q  146 tcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| || ||||||| ||||| || |||||||| | |||||| ||    ||||||||||||||||||||||| || ||||||||||||||    
T  3973397 tcaccattttcaaggtgaataaatggggtgtccggggttcaaatcgcggcccctgcatataacaatgcatgtccctaccaactgagctatg 3973307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 3996479 - 3996569
Alignment:
Q  146 tcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| || ||||||| ||||| || |||||||| | |||||| ||    ||||||||||||||||||||||| || ||||||||||||||    
T  3996479 tcaccattttcaaggtgaataaatggggtgtccggggttcaaatcgcggcccctgcatataacaatgcatgtccctaccaactgagctatg 3996569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 6054197 - 6054255
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgt 176  Q
    |||||||| |||| |||  ||||||||||||||||| ||||||| ||||||||||||||    
T  6054197 ttttgtcaaatagtctagtggttagaattcacctttttcaaggtgaataagtgaggtgt 6054255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 12143460 - 12143498
Alignment:
Q  199 tgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  12143460 tgcatataacaatgcatgtccctgccaactgagctatgt 12143498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 235
Target Start/End: Complemental strand, 51017834 - 51017796
Alignment:
Q  197 cctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  51017834 cctgcatataacaatgcatgtccctgccaactgagctat 51017796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 19137664 - 19137624
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  19137664 ccctgcatataacaatgcatgttcctgccaactgagctatg 19137624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 24160578 - 24160618
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  24160578 ccctgcatataacagtgcatgtctctgccaactgagttatg 24160618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 30745785 - 30745821
Alignment:
Q  200 gcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||| |||||||||||||||||    
T  30745785 gcatataacaatgcatgtccctgccaactgagctatg 30745821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 17262321 - 17262270
Alignment:
Q  139 ttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaacc 190  Q
    ||||||||||||||| ||||||| |||||||| |||||||| ||||| ||||    
T  17262321 ttagaattcacctttttcaaggtgaataagtggggtgtccgggattcgaacc 17262270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 143 - 230
Target Start/End: Complemental strand, 19149522 - 19149435
Alignment:
Q  143 aattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactga 230  Q
    |||||| |||| |||| |||||||| ||  ||||| | | |||||||| | |||||| ||||||| |||||||||||||| |||||||    
T  19149522 aattcatctttttcaaagtaaataaatggagtgtctggggttcaaaccctgaaccctacatataataatgcatgtctctgtcaactga 19149435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 23026001 - 23025902
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| | || || |||||||| |||||| | | ||||||||  || | || ||| ||| ||||||||| |||||||||| |||||||    
T  23026001 ggttagaattcaccttttttaaagtgaataagtggggtgtctggggttcaaacctcaatcgctacatttaataatgcatgtttctgccaacttagctatg 23025902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 33533243 - 33533208
Alignment:
Q  201 catataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||||||||||| ||||    
T  33533243 catataacaatgcatgtctctgccaactgagttatg 33533208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 34407084 - 34407175
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgag 231  Q
    ||||||||| | || ||||| | |||||||| |||||| | | ||| ||||  || |||||||||||| |||||||||| ||||||||||||    
T  34407084 tagaattcatcattttcaagatgaataagtggggtgtctggggttcgaaccccaacccctgcatataataatgcatgtccctgccaactgag 34407175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 51412041 - 51412080
Alignment:
Q  197 cctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  51412041 cctgcatataacaatgcatgtccctgccaactgaactatg 51412080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 12236644 - 12236606
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagcta 234  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  12236644 ccctgcatataataatgcatgtccctgccaactgagcta 12236606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 16985121 - 16985031
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactga 230  Q
    |||||||||| ||| | || || ||||||||  |||| |||| ||||||||  || |||| ||||||| |||| |||||||||||||||||    
T  16985121 tagaattcactttttttaaagtgaataagtggagtgttcgaggttcaaacccaaacccctacatataataatgaatgtctctgccaactga 16985031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 31680854 - 31680737
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    |||||||| |||| |||  || || ||||||||||| | ||||| |||||||| |||||||||  ||||||||  || | || | |||||||||||||||    
T  31680854 ttttgtcaaatagtctagtggctaaaattcaccttttt-aaggtgaataagtggggtgtccgaagttcaaaccccaacctctacgtataacaatgcatgt 31680756  T
Q  218 ctctgccaactgagctatg 236  Q
    | || | ||||||||||||    
T  31680755 ccctacaaactgagctatg 31680737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 6951802 - 6951880
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaa-ccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| |||||||| |||||||||| |||||| |||  | |||||||||||| |||||||||| ||| |||||||| ||||    
T  6951802 aaggtgaataagtgcggtgtccgaggttcaaatccg--acccctgcatataataatgcatgtccctgtcaactgagttatg 6951880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 231
Target Start/End: Complemental strand, 46969037 - 46969008
Alignment:
Q  202 atataacaatgcatgtctctgccaactgag 231  Q
    ||||||||||||||||||||||||||||||    
T  46969037 atataacaatgcatgtctctgccaactgag 46969008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 23237407 - 23237367
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| ||||||| |||||||||| |||||||||||||||||    
T  23237407 ccctacatataataatgcatgtccctgccaactgagctatg 23237367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 27119377 - 27119293
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgcc 224  Q
    |||||||| ||||| | |||| ||||||||| ||||| || ||||| ||||   | | ||||||||||||||||||||| |||||    
T  27119377 tagaattctcctttttaaaggaaaataagtggggtgttcgggattcgaaccccgacctctgcatataacaatgcatgtccctgcc 27119293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 40996950 - 40996882
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgcca 225  Q
    ||||| |||||||| |||| ||||||||| |||  |   |||||||||||||||||||| |||||||||    
T  40996950 aaggtgaataagtggggtgcccgagattcgaactatgccccctgcatataacaatgcatatctctgcca 40996882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 41767779 - 41767859
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||| |||||||| |||| ||||||||| |||  | | ||||||||||||||||||| |||  ||||||||||| |||||    
T  41767779 aaggtgaataagtggggtgcccgagattcgaacaatgacccctgcatataacaatgcattgttcctgccaactgaactatg 41767859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 43774230 - 43774190
Alignment:
Q  196 ccctgcatataacaatgca-tgtctctgccaactgagctat 235  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  43774230 ccctgcatataacaatgcattgtccctgccaactgagctat 43774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 43911659 - 43911619
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||  ||||||||||||||| |||||||    
T  43911659 ccctgcatataacaatatatgtctctgccaactaagctatg 43911619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 18065358 - 18065259
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| ||||||| ||| ||||||| ||||||| |||||| || | ||| ||||  || ||||||||||||||||||||| |||| ||||||||||||||    
T  18065358 ggttaaaattcacatttttcaaggtgaataagtaaggtgttcggggttcgaacctcaacccctgcatataacaatgcatgcctctaccaactgagctatg 18065259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 36386105 - 36386203
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| |||| | || || |||||||| |||||||||||||||||||   | |||||||||||||||||||| || || ||||||||||||||    
T  36386105 ggttagaattcatcttttttaaagtgaataagtggggtgtccgagattcaaacc-cgacccctgcatataacaatgcatatccctaccaactgagctatg 36386203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 2057581 - 2057486
Alignment:
Q  139 ttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||| | ||||| |||||||| |||||||| ||||| |||  |  |||||||||||||||||| || || |||||||||||||||||    
T  2057581 ttagaattcaccttttttaaggtgaataagtggggtgtccgggattcgaac--tcgaccctgcatataacaatgtatatccctgccaactgagctatg 2057486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 1244670 - 1244574
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| |||||||| | ||| ||||   | ||||||||||| ||||| ||||| ||||||||||| |||||    
T  1244670 tagaattcacctttttcaaggtgaataagtggggtgtccggggttcgaacccccacccctgcatatagcaatgtatgtccctgccaactgaactatg 1244574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 29896152 - 29896252
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| |||| ||||||| |||||||| |||||||  ||||| |||| | |  | |||||||||||||||||||| ||| |||||||| ||||    
T  29896152 ggttagaattcatctttttcaaggtgaataagtggggtgtccatgattcgaaccctgactcatgcatataacaatgcatgtcactgtcaactgagatatg 29896251  T
Q  237 t 237  Q
    |    
T  29896252 t 29896252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 140 - 226
Target Start/End: Complemental strand, 16310101 - 16310016
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaa 226  Q
    |||||||||||||| ||||||||||||||||  ||||| ||| |||||| |  ||| |||||| |||||||||||||||||| ||||    
T  16310101 tagaattcacctttttcaaggtaaataagtggagtgtcagaggttcaaatc-caaatcctgcaaataacaatgcatgtctctaccaa 16310016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 44132615 - 44132652
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44132615 ctgcatataacaatgcatgtctctgccaactgagctat 44132652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 18089830 - 18089734
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||| ||| ||||||| ||||||||||||||| | | ||| |||  |   |||||||||  | ||||||||||||||||||||||||||||    
T  18089830 tagaattcacgtttttcaaggtgaataagtgaggtgtctggggttcgaactctggcccctgcatagtataatgcatgtctctgccaactgagctatg 18089734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 22355184 - 22355088
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||  |||||| |||||||| |||||| |   ||| || |  || ||||||| |||||||||||||||  ||||||||||||||||    
T  22355184 tagaattcaccttttgcaaggtgaataagtggggtgtctggagttcgaaactcaacccctgcacataacaatgcatgtccttgccaactgagctatg 22355088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 34107375 - 34107279
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||| ||| ||||||| |||||||| |||||| |   ||| ||||  || ||||||||||||  || |||||| |||||||||||||||||    
T  34107375 tagaattcacatttttcaaggtgaataagtggggtgtctggagttcgaacctcaacccctgcatataattatacatgtccctgccaactgagctatg 34107279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 36277752 - 36277792
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  36277752 ccctacatataacaatgcatgtcactgccaactgagctatg 36277792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 227
Target Start/End: Complemental strand, 10602050 - 10602019
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaac 227  Q
    ||||||||||||||||||||||||||||||||    
T  10602050 ccctgcatataacaatgcatgtctctgccaac 10602019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 19352909 - 19352870
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  19352909 ctgcatataacaatgcatgtctctgtcaactgagttatgt 19352870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 32288462 - 32288383
Alignment:
Q  155 tcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagcta 234  Q
    ||||||| |||||||| |||||||||| ||| ||||   | |||| ||||||| ||||||||| |||| |||||||||||    
T  32288462 tcaaggtgaataagtggggtgtccgaggttcgaaccccgatccctacatataataatgcatgtttctgtcaactgagcta 32288383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 32944106 - 32944059
Alignment:
Q  197 cctgcatataacaatgcatgtctctgccaactgagctatgtctacggg 244  Q
    ||||||||||| ||||||||||  ||||||||||||||||| ||||||    
T  32944106 cctgcatataataatgcatgtccatgccaactgagctatgtttacggg 32944059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 34376600 - 34376553
Alignment:
Q  183 ttcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactga 230  Q
    |||||||| |||  |||||||||||||||||||||| |||||||||||    
T  34376600 ttcaaaccctaactcctgcatataacaatgcatgtccctgccaactga 34376553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 6496486 - 6496444
Alignment:
Q  194 aaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||| |||||||||||||||||| || ||||||||||||||    
T  6496486 aaccctacatataacaatgcatgtcccttccaactgagctatg 6496444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 29713083 - 29713173
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactga 230  Q
    ||||||||| |||| | |||||||||||||  |||||| | | ||| ||||  || ||||||||||||||||| |||||  ||||||||||    
T  29713083 tagaattcatcttttttaaggtaaataagtagggtgtctggggttcgaaccccaatccctgcatataacaatgtatgtccgtgccaactga 29713173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 13294434 - 13294475
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    ||||||||||||||||||||||| ||||||| ||| ||||||    
T  13294434 ccctgcatataacaatgcatgtccctgccaattgaactatgt 13294475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Complemental strand, 28679920 - 28679879
Alignment:
Q  138 gttagaattcacctttctcaaggtaaataagtgaggtgtccg 179  Q
    ||||||||| ||||||  ||||||||||||||||||||||||    
T  28679920 gttagaatttaccttttgcaaggtaaataagtgaggtgtccg 28679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 244
Target Start/End: Original strand, 32527127 - 32527176
Alignment:
Q  196 ccctgcatataacaatgcat-gtctctgccaactgagctatgtctacggg 244  Q
    |||||||||||| ||||||| ||| |||||||||||||||||| ||||||    
T  32527127 ccctgcatataataatgcattgtccctgccaactgagctatgtttacggg 32527176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 2394945 - 2394997
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtg 170  Q
    |||||||| | || |||| ||||||||||||||||| ||||||| ||||||||    
T  2394945 ttttgtcaaaaagtctattggttagaattcacctttttcaaggtgaataagtg 2394997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 5772905 - 5772865
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||| ||||||  ||||||||||||||||    
T  5772905 ccctgcatataacaatacatgtccttgccaactgagctatg 5772865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 11133160 - 11133080
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||| |||||||| |||||||| | ||| ||||   | ||||||||||||||||||| |||| || ||||||||||||||    
T  11133160 aaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcattgtccctaccaactgagctatg 11133080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Original strand, 14307744 - 14307780
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagc 232  Q
    ||||||||||||||||||||||| || ||||||||||    
T  14307744 ccctgcatataacaatgcatgtccctaccaactgagc 14307780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 231
Target Start/End: Complemental strand, 39118523 - 39118403
Alignment:
Q  111 ctatttcttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaa 210  Q
    |||||| ||||||||| ||| |||  || |||||||| ||||| | ||||  |||||||| ||||| || ||||| |||  |   |||||||||||||||    
T  39118523 ctattttttttgtcaggtagtctagtggctagaattctccttttttaaggagaataagtggggtgttcgggattcgaactctggcccctgcatataacaa 39118424  T
Q  211 tgcatgtctctgccaactgag 231  Q
    || ||||| || |||||||||    
T  39118423 tgtatgtccctaccaactgag 39118403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 19388 - 19477
Alignment:
Q  139 ttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaact 228  Q
    ||||||||||||||| |||| || ||||| ||||||||||||| ||||| ||  || |||| ||||||||||||||||||  ||||||||    
T  19388 ttagaattcacctttttcaaagtgaataaatgaggtgtccgaggttcaatccccaacccctacatataacaatgcatgtccgtgccaact 19477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 38040363 - 38040271
Alignment:
Q  143 aattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||| ||||| | |||||||| | |||||||| ||| ||||   | ||||||||||||||||||||||| |||||||||||||||||    
T  38040363 aattcacctttttcaagatgaataagtgggatgtccgag-ttcgaacctcgacccctgcatataacaatgcatgtccctgccaactgagctatg 38040271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 7147013 - 7147109
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| |||| |||||||| ||||||||| ||| ||| ||||   | |||||||||||| ||||||||||  | ||||||||||||||    
T  7147013 tagaattcacctttttcaatgtaaataaatgaggtgtcagaggttcgaaccccgacccctgcatataataatgcatgtccttaccaactgagctatg 7147109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 42781642 - 42781683
Alignment:
Q  194 aaccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  42781642 aaccctgcatataacaatgcatgtccctgccaactgagctat 42781683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 11246544 - 11246584
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  11246544 ccctgcatataacaatgcatgtccctgccaactgagctatg 11246584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 252
Target Start/End: Complemental strand, 25660957 - 25660901
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgtctacggggacgatat 252  Q
    |||||||||||||||||||| || |||||||||||||||||   |||||||||||||    
T  25660957 ccctgcatataacaatgcatatccctgccaactgagctatgctcacggggacgatat 25660901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 31556919 - 31556823
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||| || ||||||| |||||||| |||||||| | ||| |||    | ||||||||||||||||||||||| |||| || |||||||||    
T  31556919 tagaattcacccttttcaaggtgaataagtggggtgtccggggttcgaactccgacccctgcatataacaatgcatgtccctgctaagtgagctatg 31556823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 36742017 - 36742057
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  36742017 ccctgcatataacaattcatgtctctgccaactgagctatg 36742057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 42553133 - 42553230
Alignment:
Q  138 gttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| ||| ||||||| ||||||||  ||||||| | ||| ||||   | |||||||||||||||||||||||  || |||||||||||||    
T  42553133 gttagaattcacatttttcaaggtgaataagtgtagtgtccggggttcgaaccccga-ccctgcatataacaatgcatgtcgttgtcaactgagctatg 42553230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 6806690 - 6806731
Alignment:
Q  196 ccctgcatataacaatgcat-gtctctgccaactgagctatg 236  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  6806690 ccctgcatataacaatgcattgtctctgccaactgagctatg 6806731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 28768701 - 28768600
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||| |||||||  ||||||||| |||  | ||||| |||  | | || ||||||| |||||||||||| || |||||||| |||||    
T  28768701 ggttagaattcacctttttcaaggtggataagtgagatgtttgggattcgaactctgacccttgcatatgacaatgcatgtccctaccaactgaactatg 28768602  T
Q  237 tc 238  Q
    ||    
T  28768601 tc 28768600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 31907737 - 31907657
Alignment:
Q  155 tcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    ||||||| |||||||| ||||| |||| ||  |||| | | ||||||||||||||||||||||| |||| |||||| ||||    
T  31907737 tcaaggtgaataagtggggtgttcgaggtttgaaccatgacccctgcatataacaatgcatgtccctgcaaactgacctat 31907657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 35813292 - 35813332
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  35813292 ccctgcatataacaatgcatgtccctgtcaactgagctatg 35813332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 9963500 - 9963421
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctat 235  Q
    ||||| |||||||| || ||||||  ||| ||||  || ||||||||||||||||||| |||| ||||||||||||||||    
T  9963500 aaggtgaataagtggggggtccgaagttcgaaccccaacccctgcatataacaatgcattgtccctgccaactgagctat 9963421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 17557075 - 17557040
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgag 231  Q
    |||| |||||||||||||||||||||||||||||||    
T  17557075 ccctacatataacaatgcatgtctctgccaactgag 17557040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 38040140 - 38040183
Alignment:
Q  194 aaccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    |||||||||||||||||||||||||  |||||||||| ||||||    
T  38040140 aaccctgcatataacaatgcatgtccttgccaactgaactatgt 38040183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 40250228 - 40250267
Alignment:
Q  197 cctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  40250228 cctgcatataacaatgcatgttactgccaactgagctatg 40250267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 16969672 - 16969758
Alignment:
Q  150 ctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| ||||||| |||||||| |||||  ||||||||||||   | |||| |||| ||||||||||||| || |||||| |||||||    
T  16969672 ctttttcaaggtgaataagtggggtgtttgagattcaaaccccgatccctacataaaacaatgcatgtccctaccaactaagctatg 16969758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 249
Target Start/End: Complemental strand, 34325310 - 34325257
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgtctacggggacga 249  Q
    |||||||||||| |||||||||| ||| ||||||||| ||||  ||||||||||    
T  34325310 ccctgcatataataatgcatgtccctgtcaactgagccatgttcacggggacga 34325257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 232
Target Start/End: Complemental strand, 20186911 - 20186875
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagc 232  Q
    |||||||||||| |||||||||| |||||||||||||    
T  20186911 ccctgcatataataatgcatgtccctgccaactgagc 20186875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 22687872 - 22687924
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaac 189  Q
    ||||||||||||||||| ||||||| |||||||| ||||| || | |||||||    
T  22687872 ggttagaattcacctttttcaaggtgaataagtggggtgttcggggttcaaac 22687924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 31280374 - 31280469
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| |||||||  ||||||| ||||| || | ||| |||| |   |||||||||||  ||| |||||| |||||||||||||||||    
T  31280374 tagaattcacctttttcaaggtggataagtg-ggtgttcggggttcgaaccttggcccctgcatatagtaatacatgtccctgccaactgagctatg 31280469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 38230222 - 38230273
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcat 215  Q
    ||||||||||||||||| ||||||||||   | ||||||||||||||||||||    
T  38230222 aataagtgaggtgtccgggattcaaacc-cgacccctgcatataacaatgcat 38230273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 39684342 - 39684262
Alignment:
Q  137 ggttagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgt 217  Q
    ||||||||||||||||| | ||||| |||||||| | |||||| | || ||| | | | |||| |||||||||||||||||    
T  39684342 ggttagaattcaccttttttaaggtgaataagtgggatgtccggggtttaaatcctgacccctacatataacaatgcatgt 39684262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 10020463 - 10020559
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||| | |||||||| | ||| || | ||| ||||  || ||||||||||||||||||||||| ||| |||||||||||||    
T  10020463 tagaattcacctttttcaagatgaataagtgggttgttcggggttcgaaccccaacccctgcatataacaatgcatgtccctgtcaactgagctatg 10020559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 7465511 - 7465471
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  7465511 ccctgcatataataatgcatgtctctgccaactgagctatg 7465471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 23799378 - 23799310
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgag 231  Q
    |||||||| |||||||||| ||| || |   | ||||||||||||||||||||||||||||||||||||    
T  23799378 aataagtggggtgtccgaggttcgaatcccgacccctgcatataacaatgcatgtctctgccaactgag 23799310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 24427408 - 24427368
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  24427408 ccctgcatataacaatgcatgtctctgccaactgagttatg 24427368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 35498498 - 35498403
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| |||| || |||||||| |||||||||  ||  ||||  || |||||||||||| |||||||||| |||||||||||| ||||    
T  35498498 tagaattcacctttttcaaagtgaataagtggggtgtccgaagtttgaaccc-aacccctgcatataataatgcatgtccctgccaactgagttatg 35498403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 39524788 - 39524713
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatg 216  Q
    |||||||||||||| |||| |||||||| |||||||| || ||||| ||||  || |||||||||||||||||||||    
T  39524788 tagaattcacctttttcaaagtaaataaatgaggtgttcg-gattcgaacctcaacccctgcatataacaatgcatg 39524713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 8147201 - 8147276
Alignment:
Q  161 taaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||| |||  |||   | || |||||||||||||||||||| ||||||| |||||||||    
T  8147201 taaataagtgaggtgtccgaggttcgtacccggacccttgcatataacaatgcatgtccctgccaattgagctatg 8147276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 35195888 - 35195837
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgtctacggggac 247  Q
    |||||||||||| |||||||||| |||||||||||||||||  |||||||||    
T  35195888 ccctgcatataataatgcatgtccctgccaactgagctatgcttacggggac 35195837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 7392315 - 7392396
Alignment:
Q  155 tcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||| |||||||| ||||| || | ||||||||  || | ||||||||||||||||||||  ||||||| |||||||||    
T  7392315 tcaaggtgaataagtggggtgttcggggttcaaaccccaacctctgcatataacaatgcatgttcctgccaattgagctatg 7392396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 234
Target Start/End: Complemental strand, 11808142 - 11808045
Alignment:
Q  138 gttagaattcacctttctc-aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagcta 234  Q
    |||||||||||| ||| || ||||| |||||||| |||||||| | ||| ||||   | ||||||||||||||||||||||| || |||| |||||||    
T  11808142 gttagaattcacgtttttctaaggtgaataagtggggtgtccggggttcgaaccccgacccctgcatataacaatgcatgtccctaccaattgagcta 11808045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 17305443 - 17305480
Alignment:
Q  199 tgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||||| |||||||||||||||||    
T  17305443 tgcatataacaatgcatgtccctgccaactgagctatg 17305480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 37410498 - 37410571
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||||||   ||| |||| | | |||||||||||||||||||||||  | ||||||||||||||    
T  37410498 aataagtgaggtgtccggagttcgaaccttgacccctgcatataacaatgcatgtccttaccaactgagctatg 37410571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 37995596 - 37995636
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  37995596 ccctgcatataaca-tgcatgtctctgccaactgagctatgt 37995636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 1649253 - 1649157
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||| || ||||||| |||||||| |||||||  | ||| |||| |   ||||||||| |||||||||| || || ||||||||||||||    
T  1649253 tagaattcaccattttcaaggtgaataagtggggtgtccagggttcgaaccctggcccctgcataaaacaatgcatatccctaccaactgagctatg 1649157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 43635689 - 43635593
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||| ||   ||||| |||||||| |||||||| | ||| ||||   | | |||||||||||||||||||| ||||||||||||| ||||    
T  43635689 tagaattcaccctttgtaaggtgaataagtggggtgtccggggttcgaaccccgaccgctgcatataacaatgcatgtttctgccaactgagttatg 43635593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 10474523 - 10474602
Alignment:
Q  157 aaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||| ||||||||||||||||| |  || ||||   | ||||||||||||||||| |||||||| |||||||| |||||    
T  10474523 aaggtgaataagtgaggtgtccgggggtcgaaccccgacccctgcatataacaatgtatgtctctaccaactgaactatg 10474602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 26734243 - 26734302
Alignment:
Q  118 ttttgtcagatagactatcggttagaattcacctttctcaaggtaaataagtgaggtgtc 177  Q
    ||||||||||||| |||  || |||||||||||||| ||||||| |||||||| ||||||    
T  26734243 ttttgtcagatagcctagtggctagaattcacctttttcaaggtgaataagtggggtgtc 26734302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 32309142 - 32309229
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaac 227  Q
    |||||||||| ||| | ||||| ||||| || |||||| ||||||| |||    | ||||||||||||||||||||||| ||||||||    
T  32309142 tagaattcacattttttaaggtgaataactggggtgtctgagattcgaactccgacccctgcatataacaatgcatgtccctgccaac 32309229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 38032905 - 38032956
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgtctacggggac 247  Q
    ||||| ||||||||||||||||| |||||||||||| |||||  ||||||||    
T  38032905 ccctgtatataacaatgcatgtccctgccaactgagttatgttcacggggac 38032956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 41139165 - 41139091
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||||||| ||||||| ||||| ||||   | |||||||||||| |||||| |||| |||||||||||||||||    
T  41139165 aataagtgaagtgtccgggattcgaaccccgacccctgcatataataatgcattgtccctgccaactgagctatg 41139091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 19924810 - 19924773
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctat 235  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  19924810 ctgcatataataatgcatgtccctgccaactgagctat 19924773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 21285403 - 21285444
Alignment:
Q  196 ccctgcatataacaatgca-tgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||| |||| |||||||||||||||||    
T  21285403 ccctgcatataacaatgcattgtccctgccaactgagctatg 21285444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 27726421 - 27726470
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatgtctacggggac 247  Q
    |||| ||||| |||||||||| ||||||||||||||||||  ||||||||    
T  27726421 ctgcttataataatgcatgtccctgccaactgagctatgttcacggggac 27726470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 32814905 - 32814832
Alignment:
Q  163 aataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||| |||||||| ||||| |||    | |||||||||||| |||||||||| || ||||||||||||||    
T  32814905 aataagtggggtgtccgggattcgaactccgacccctgcatataataatgcatgtccctaccaactgagctatg 32814832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 43209446 - 43209405
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatgt 237  Q
    ||||||||||||||||||||||  |||||||||||| |||||    
T  43209446 ccctgcatataacaatgcatgttcctgccaactgagttatgt 43209405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 14772385 - 14772425
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| ||| ||||||||||||||||||||||||||| ||||    
T  14772385 ccctacatgtaacaatgcatgtctctgccaactgagttatg 14772425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 15222837 - 15222877
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||| ||| ||||||||||||||||||||||||||| ||||    
T  15222837 ccctacatgtaacaatgcatgtctctgccaactgagttatg 15222877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Original strand, 20527479 - 20527519
Alignment:
Q  196 ccctgcatataacaatgca-tgtctctgccaactgagctat 235  Q
    ||||||||||||||||||| |||| ||||||||||||||||    
T  20527479 ccctgcatataacaatgcattgtccctgccaactgagctat 20527519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 43712307 - 43712403
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||| ||||| ||||||   ||||||| ||| |||||| ||| ||||   | ||||| ||||||||||||||||| || ||||||||| ||||    
T  43712307 tagaattctcctttttcaaggaggataagtggggtatccgaggttcgaaccccgacccctgtatataacaatgcatgtccctaccaactgagttatg 43712403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Original strand, 45267977 - 45268033
Alignment:
Q  197 cctgcatataacaatgcatgtctctgccaactgagctatgtctacggggacgatatg 253  Q
    ||||||||||| |||  |||||||||||||||||||||||   |||||||| |||||    
T  45267977 cctgcatataataatatatgtctctgccaactgagctatgctcacggggacaatatg 45268033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0712 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0712
Description:

Target: scaffold0712; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 4565 - 4525
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  4565 ccctgcatataacaatgcatgtccctgccaactgagctatg 4525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0709 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0709
Description:

Target: scaffold0709; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 4585 - 4545
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  4585 ccctgcatataacaatgcatgtccctgccaactgagctatg 4545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 34083 - 34123
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  34083 ccctgcatataacaatgcatgtccctgccaactgagctatg 34123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 21016 - 21070
Alignment:
Q  198 ctgcatataacaatgcatgtctctgccaactgagctatgtctacggggacgatat 252  Q
    |||||||||||||||||||||| || ||||||||||||||  |||| ||||||||    
T  21016 ctgcatataacaatgcatgtctttgtcaactgagctatgttcacggagacgatat 21070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Original strand, 25011 - 25051
Alignment:
Q  196 ccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||||||||||||||||| ||||    
T  25011 ccctgcatataacattgcatgtctctgccaactgagatatg 25051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 1140 - 1044
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||||||| ||||||| |||||||| |||||| | | ||| ||||  |  |||| |||||||  ||||||||| || ||||||||||||||    
T  1140 tagaattcacctttttcaaggtgaataagtggggtgtctggggttcgaaccccagcccctacatataattatgcatgtccctaccaactgagctatg 1044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 67262 - 67166
Alignment:
Q  140 tagaattcacctttctcaaggtaaataagtgaggtgtccgagattcaaaccgtaaaccctgcatataacaatgcatgtctctgccaactgagctatg 236  Q
    |||||||||| ||| ||||||| | |||||| |||||||  | ||| ||||  |  |||| ||||||||||||||| || || ||||||||||||||    
T  67262 tagaattcacttttttcaaggtgattaagtggggtgtccagggttcgaaccccagcccctacatataacaatgcatatccctcccaactgagctatg 67166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University