View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14195_high_18 (Length: 347)
Name: NF14195_high_18
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14195_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 20648773 - 20649100
Alignment:
| Q |
1 |
ggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaaccatcatcgatat |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| | | ||||||||||||||||||||||| |
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| T |
20648773 |
ggagcagtatactccggaacatgatcagtatacaaaactttcatgctcctattgaagggtttaatttcatctaccccaaagatgtaaccatcatcgatat |
20648872 |
T |
|
| Q |
101 |
cccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcattataaatgta |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648873 |
cccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcattataaatgta |
20648972 |
T |
|
| Q |
201 |
aacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaat |
300 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648973 |
aacaacttttgtatcgtggccaactaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaat |
20649072 |
T |
|
| Q |
301 |
gcatatgcatcagaatcatttgatgatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
20649073 |
gcatatgcatcagaatcatttgatgatg |
20649100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 20632677 - 20633001
Alignment:
| Q |
1 |
ggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaaccatcatcgatat |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||| | ||||||||||||||||||||||| |
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| T |
20632677 |
ggagcagtatactccggaacatgatcagtatacaaaactttcatgctcttattgaagtgtttaaaatcatatcccccaaagatgtaaccatcatcgatat |
20632776 |
T |
|
| Q |
101 |
cccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcattataaatgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20632777 |
cccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcattataaatgta |
20632876 |
T |
|
| Q |
201 |
aacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaat |
300 |
Q |
| |
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||||| ||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632877 |
aacaa---ttgtatcgtggccagcgaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaat |
20632973 |
T |
|
| Q |
301 |
gcatatgcatcagaatcatttgatgatg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
20632974 |
gcatatgcatcagaatcatttgatgatg |
20633001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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