View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14195_high_19 (Length: 340)
Name: NF14195_high_19
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14195_high_19 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 340
Target Start/End: Complemental strand, 2456989 - 2456672
Alignment:
| Q |
21 |
atcatcagaaggactgaaatgccatacaccaaaagtacataaagttgagagaaagagagtaacagagtaaagagaggatcatatagtagtaactaattta |
120 |
Q |
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| T |
2456989 |
atcatcagaaggactgaaatgccatacagcaaaagtacataaagttgagagaaagagagtaacagagtaaagagaggatcatatagtagtaactaattta |
2456890 |
T |
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| Q |
121 |
ttgtcaaaacgtggagttctctttctcctaagctccaatttcgaagatcctaaaatagttatttgtgctatttctcatagcaatcatgcatgtttcatcg |
220 |
Q |
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| T |
2456889 |
ttgtcaaaacgtggagttctctttctcctaagctccaattttgaagatcctaaaatagctatttgtgctatttctcatagcaat----caagtttcattg |
2456794 |
T |
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| Q |
221 |
ttttattcaattcaata--ttcctaaatagataataaaacaagagtacgtatagctctactcatgaatagaaacattgtttttatacaacttcgaaacac |
318 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2456793 |
ttttattcaattcaatattttcctaaatagataataaaacaagagtacgtatagctctactcatgaatagaaacattgtttttatacaacttcgaaacac |
2456694 |
T |
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| Q |
319 |
aaactgcaatacacgaaaagta |
340 |
Q |
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| T |
2456693 |
aaactgcaatacacgaaaagta |
2456672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 770964 - 771041
Alignment:
| Q |
39 |
atgccatacaccaaaagtacataaagttgagagaaagagagtaacagagtaaagagaggatcatatagtagtaactaa |
116 |
Q |
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| T |
770964 |
atgccatacaccaaaagtacataaagttgagagaaagagagtaacagagtaaagagaggatcatatagtagtaactaa |
771041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 170 - 287
Target Start/End: Original strand, 771038 - 771151
Alignment:
| Q |
170 |
ctaaaatagttatttgtgctatttctcatagcaatcatgcatgtttcatcgttttattcaattcaatattcctaaatagataataaaacaagagtacgta |
269 |
Q |
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| T |
771038 |
ctaaaatagctatttgtgctatttcttattgcaatcatg----tttcattgttttattaaattcaatcttcctaaatagataataaaacaagagtacata |
771133 |
T |
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| Q |
270 |
tagctctactcatgaata |
287 |
Q |
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||| | ||| |||||||| |
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| T |
771134 |
tagttgtacacatgaata |
771151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 9504301 - 9504334
Alignment:
| Q |
22 |
tcatcagaaggactgaaatgccatacaccaaaag |
55 |
Q |
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| T |
9504301 |
tcatcagaaggactgagatgccatacaccaaaag |
9504334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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