View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14195_high_1_N (Length: 910)

Name: NF14195_high_1_N
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14195_high_1_N
NF14195_high_1_N
[»] chr8 (2 HSPs)
chr8 (473-646)||(12933811-12933984)
chr8 (496-533)||(36999937-36999974)
[»] chr4 (3 HSPs)
chr4 (473-646)||(28608621-28608794)
chr4 (473-623)||(14177081-14177231)
chr4 (481-534)||(20706182-20706234)
[»] chr7 (1 HSPs)
chr7 (466-503)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (466-503)||(796698-796735)
chr6 (466-503)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (466-503)||(19944036-19944073)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 473 - 646
Target Start/End: Original strand, 12933811 - 12933984
Alignment:
Q  473 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 571  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  12933811 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 12933909  T
Q  572 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 646  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  12933910 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 12933984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 496 - 533
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  496 catggagatttggaagaggagatttatatggagcaacc 533  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 473 - 646
Target Start/End: Complemental strand, 28608794 - 28608621
Alignment:
Q  473 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 571  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  ||||||||||||||| ||| || || ||||| | ||| |||| |    
T  28608794 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggattt-aagaagactcgaaaggagcacttggttt 28608696  T
Q  572 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggtacatgaagtttgattcattcatga 646  Q
    |||||||||| |||||  | |||||||| || || |||||||| || ||||| | ||| ||||| || |||||||    
T  28608695 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggtataagaaatttgactcgttcatga 28608621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 473 - 623
Target Start/End: Original strand, 14177081 - 14177231
Alignment:
Q  473 tggatgtgaaaactgcatttcttcatggagatttggaagaggagatttatatggagcaaccagaaggatttgaagtag-ctggaaagaaacacatggtgt 571  Q
    ||||||| || ||||||||||||||||||||||| || || ||||| || ||||  |||||||||||||||| || || || ||||| | ||| |||| |    
T  14177081 tggatgtaaagactgcatttcttcatggagatttagatgaagagatctacatggttcaaccagaaggatttg-agaagactcgaaaggagcacttggttt 14177179  T
Q  572 gcaaattgaataagagtctttatggattgaagcaggcaccaaggcagtggta 623  Q
    |||||||||| |||||  | |||||||| || || |||||||| || |||||    
T  14177180 gcaaattgaagaagagcttgtatggattaaaacaagcaccaagacaatggta 14177231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 534
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  481 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 534  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  466 gagcagttggatgtgaaaactgcatttcttcatggaga 503  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 503
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  466 gagcagttggatgtgaaaactgcatttcttcatggaga 503  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  466 gagcagttggatgtgaaaactgcatttcttcatggaga 503  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 466 - 503
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  466 gagcagttggatgtgaaaactgcatttcttcatggaga 503  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University