View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14195_high_2 (Length: 563)

Name: NF14195_high_2
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14195_high_2
NF14195_high_2
[»] chr7 (5 HSPs)
chr7 (30-537)||(30408228-30408738)
chr7 (30-462)||(30394611-30395047)
chr7 (495-534)||(30395062-30395101)
chr7 (66-116)||(23747323-23747374)
chr7 (59-120)||(1110411-1110473)
[»] chr3 (2 HSPs)
chr3 (176-245)||(2057042-2057111)
chr3 (181-264)||(22295006-22295089)
[»] chr4 (3 HSPs)
chr4 (32-124)||(13298521-13298614)
chr4 (59-118)||(55314494-55314554)
chr4 (69-116)||(9318706-9318754)
[»] chr6 (2 HSPs)
chr6 (59-123)||(2732929-2732994)
chr6 (94-123)||(9997224-9997253)
[»] chr1 (2 HSPs)
chr1 (64-116)||(11766186-11766237)
chr1 (48-116)||(6025962-6026031)
[»] chr5 (4 HSPs)
chr5 (59-122)||(19115101-19115164)
chr5 (59-124)||(11257720-11257786)
chr5 (199-245)||(18875594-18875640)
chr5 (66-117)||(41015013-41015065)
[»] chr8 (4 HSPs)
chr8 (59-116)||(8282852-8282910)
chr8 (59-116)||(13851011-13851067)
chr8 (60-104)||(13869848-13869891)
chr8 (76-119)||(18737689-18737733)
[»] chr2 (2 HSPs)
chr2 (74-115)||(41631902-41631944)
chr2 (59-122)||(16733713-16733777)
[»] scaffold0491 (1 HSPs)
scaffold0491 (76-119)||(4388-4432)


Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 30 - 537
Target Start/End: Original strand, 30408228 - 30408738
Alignment:
Q  30 agcagtgctataatgccactatagacacaatttgaaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatttcgctacattgac 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||    
T  30408228 agcagtgctataatgccactatagacacaatttgaaaacattttgtactaattagaatatcacaaacaatagccacttgttcaaatttcgctacattaac 30408327  T
Q  130 agtatttcct-ctaaacagacctgcagatgcataaagaaaaagcagtatgactaccttgggtttggattccctttgacaaccttctgtccatactttcgc 228  Q
    |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408328 agtatttccttctaaacaggcctgcagatgcataaagaaaaagcagtatgactaccttgggtttggattccctttgacaaccttctgtccatactttcgc 30408427  T
Q  229 cagcgataaccatcatcaagtatgtcgatctcactctcaatttggactaccactcgtggctcacgaacagccctcggaggcaccattgtttcaaccgggt 328  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408428 cagcgataaccatcatcaagtatgtcgatgtcactctcaatttggactaccactcgtggctcacgaacagccctcggaggcaccattgtttcaaccgggt 30408527  T
Q  329 agctctccttcttcctgcaacagaaaattaaaccaacaacatacatagactg--tctctatttgtattgccaatgccagcatgaagacagtagcagataa 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  30408528 agctctccttcttcctgcaacagaaaattaaaccaacaacatacatagactgtctctctatttgtattgccaatgccagcatgaagacagtagcagataa 30408627  T
Q  427 agtacagtaccttcttttcgattctgagtcggcatcttcaggattgttttcaggtgataggactgcttgagtggctccatctttatcaccatcatgatta 526  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408628 agtacagtaccttcttttcgattctgaatcggcatcttcaggattgttttcaggtgataggactgcttgagtggctccatctttatcaccatcatgatta 30408727  T
Q  527 ccaagtgctga 537  Q
    |||||||||||    
T  30408728 ccaagtgctga 30408738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 462
Target Start/End: Original strand, 30394611 - 30395047
Alignment:
Q  30 agcagtgctataatgccactatagacacaatttgaaaacattttgtactaattag--catatcacaaacaatagcaatttgttcaaatttcgctacattg 127  Q
    |||||||||||||| || | ||| |||| |||||||||||||||||||||||||   | | |||||||||||||||||||||||||||||| ||||||||    
T  30394611 agcagtgctataataccgcgatacacactatttgaaaacattttgtactaattatatcttctcacaaacaatagcaatttgttcaaatttcactacattg 30394710  T
Q  128 acagtatttcctctaaacagacctgcagatgcataaagaaaaagcagtatgactaccttgggtttggattccctttgacaaccttctgtccatactttcg 227  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30394711 acagtatttcctctaaacagatctgcagatgcataaagaaaaagcaatatgactaccttgggtttggattccctttgacaaccttctgtccatactttcg 30394810  T
Q  228 ccagcgataaccatcatcaagtatgtcgatctcactctcaatttggactaccactcgtggctcacgaacagccctcggaggcaccattgtttcaaccggg 327  Q
    |||||||||||||||||||||||  || || ||||||||| ||||||||| |||||||||| |||||||||||||| |||||| ||||||||||||||||    
T  30394811 ccagcgataaccatcatcaagtacatcaatgtcactctcactttggactatcactcgtggcgcacgaacagccctccgaggcagcattgtttcaaccggg 30394910  T
Q  328 tagctctccttcttcctgcaacagaaaattaaaccaacaacatacatagactgtc--tctatttgtattgccaatgccagcatgaagacagtagcagata 425  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||  |||||||||||||||||||| | ||||||||||||| ||||||    
T  30394911 tagctctccttcttcctgcaacagaaaattaaaccaacaacgtatatagattgtctttctatttgtattgccaatgctaacatgaagacagtatcagata 30395010  T
Q  426 aagtacagtaccttcttttcgattctgagtcggcatc 462  Q
    || |||| |||||||||||||||||||||||||||||    
T  30395011 aaatacaataccttcttttcgattctgagtcggcatc 30395047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 495 - 534
Target Start/End: Original strand, 30395062 - 30395101
Alignment:
Q  495 gagtggctccatctttatcaccatcatgattaccaagtgc 534  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  30395062 gagtggctccatctttatcaccatcatgattatcaagtgc 30395101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 23747374 - 23747323
Alignment:
Q  66 aacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatt 116  Q
    |||| |||||||||| |||||||||||| ||||||||| |||||||||||||    
T  23747374 aacagtttgtactaactagcatatcacagaacaatagctatttgttcaaatt 23747323  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 120
Target Start/End: Original strand, 1110411 - 1110473
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcac-aaacaatagcaatttgttcaaatttcgc 120  Q
    |||||| |||| || | ||||| ||||||||| | ||||||||||||||||||||||||||||    
T  1110411 atttgacaacacttagaactaaatagcatatcccgaaacaatagcaatttgttcaaatttcgc 1110473  T

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Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 2057111 - 2057042
Alignment:
Q  176 atgactaccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatc 245  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||| || ||||| ||||||||||||||    
T  2057111 atgactaccttgggttgggatttcctttgacaactttctgtccatatttccgccaccgataaccatcatc 2057042  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 22295089 - 22295006
Alignment:
Q  181 taccttgggtttggattccctttgacaaccttctgtccatactttcgccagcgataaccatcatcaagtatgtcgatctcactc 264  Q
    ||||| ||||| ||||| ||| | || |||||||| ||||| || |||||||||||||||||||| | |||||| | |||||||    
T  22295089 tacctagggttaggattgcctcttaccaccttctgcccatatttacgccagcgataaccatcatccaatatgtcaacctcactc 22295006  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 32 - 124
Target Start/End: Complemental strand, 13298614 - 13298521
Alignment:
Q  32 cagtgctataatgccactatagacacaatttgaaaacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatttcgctaca 124  Q
    |||||||||| ||||| ||||| ||| |||||| | || |||||||||| |||||||||||| ||||||||  ||||||||||||| |||||||    
T  13298614 cagtgctatagtgccattatagtcactatttgacagcactttgtactaaatagcatatcacagaacaatagtgatttgttcaaattccgctaca 13298521  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 55314554 - 55314494
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatttc 118  Q
    |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||    
T  55314554 atttgataacactttgtactaattagcatatcgcagaacaatagcaatttgttcaaatttc 55314494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 116
Target Start/End: Complemental strand, 9318754 - 9318706
Alignment:
Q  69 attttgtactaattagcatatcac-aaacaatagcaatttgttcaaatt 116  Q
    |||||||||||| ||||||||||| ||||||||  ||||||||||||||    
T  9318754 attttgtactaaatagcatatcactaaacaatatgaatttgttcaaatt 9318706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 2732994 - 2732929
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcac-aaacaatagcaatttgttcaaatttcgctac 123  Q
    |||||| ||||||||||||||| ||||||||| | |||||||||| ||||||||||||||| ||||    
T  2732994 atttgacaacattttgtactaaatagcatatcgcaaaacaatagcgatttgttcaaatttcactac 2732929  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 123
Target Start/End: Original strand, 9997224 - 9997253
Alignment:
Q  94 aacaatagcaatttgttcaaatttcgctac 123  Q
    ||||||||||||||||||||||||||||||    
T  9997224 aacaatagcaatttgttcaaatttcgctac 9997253  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 11766186 - 11766237
Alignment:
Q  64 aaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatt 116  Q
    |||||| |||||||||| |||||||||| |||||||||| |||||||||||||    
T  11766186 aaaacactttgtactaaatagcatatca-aaacaatagctatttgttcaaatt 11766237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 6025962 - 6026031
Alignment:
Q  48 ctatagacacaatttgaaaacattttgtactaattagcatatcac-aaacaatagcaatttgttcaaatt 116  Q
    |||||| ||| |||||| ||||||||||||||| ||||||||| |  ||||||| | |||||||||||||    
T  6025962 ctatagccactatttgacaacattttgtactaaatagcatatcgcggaacaataactatttgttcaaatt 6026031  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 19115101 - 19115164
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatttcgcta 122  Q
    |||||| ||| ||||||||||| || |||||  ||||||| |||||| ||||||||||||||||    
T  19115101 atttgacaacgttttgtactaaatatcatattgcaaacaacagcaatctgttcaaatttcgcta 19115164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 124
Target Start/End: Complemental strand, 11257786 - 11257720
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatttcgctaca 124  Q
    |||||| ||||||||||||||| |||||||||  | ||||||||| ||||||||| ||| |||||||    
T  11257786 atttgacaacattttgtactaaatagcatatcgtataacaatagcgatttgttcatattccgctaca 11257720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 18875594 - 18875640
Alignment:
Q  199 cctttgacaaccttctgtccatactttcgccagcgataaccatcatc 245  Q
    ||||||||||| ||||||||||| |||||||| | ||||||||||||    
T  18875594 cctttgacaactttctgtccatattttcgccatctataaccatcatc 18875640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 41015013 - 41015065
Alignment:
Q  66 aacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaattt 117  Q
    |||| |||||||||| |||||||||||  |||||||||| |||||||||||||    
T  41015013 aacactttgtactaaatagcatatcacggaacaatagcagtttgttcaaattt 41015065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 8282852 - 8282910
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcacaa-acaatagcaatttgttcaaatt 116  Q
    |||||| ||||||||||| ||| | ||||||||||| |||||||| |||||||||||||    
T  8282852 atttgagaacattttgtaataaatcgcatatcacaagacaatagctatttgttcaaatt 8282910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 13851011 - 13851067
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcacaaacaatagcaatttgttcaaatt 116  Q
    |||||| ||||||||||||||| ||| |||||||||| |||||||| ||| |||||||    
T  13851011 atttgataacattttgtactaaatagtatatcacaaa-aatagcaacttgctcaaatt 13851067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 13869848 - 13869891
Alignment:
Q  60 tttgaaaacattttgtactaattagcatatcacaaacaatagcaa 104  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||    
T  13869848 tttgacaacattttgtactaaatagcatatcacaaa-aatagcaa 13869891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 18737733 - 18737689
Alignment:
Q  76 actaattagcatatcac-aaacaatagcaatttgttcaaatttcg 119  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||    
T  18737733 actaaatagcatatcccgaaacaatagcaatttgttcaaatttcg 18737689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 41631902 - 41631944
Alignment:
Q  74 gtactaattagcatatcacaaa-caatagcaatttgttcaaat 115  Q
    ||||||| |||||||||||||| ||||||||||||||||||||    
T  41631902 gtactaaatagcatatcacaaaacaatagcaatttgttcaaat 41631944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 16733713 - 16733777
Alignment:
Q  59 atttgaaaacattttgtactaattagcatatcaca-aacaatagcaatttgttcaaatttcgcta 122  Q
    ||||||||||| | |||||||| ||||  ||| || |||||||||||||| ||||||||||||||    
T  16733713 atttgaaaacactgtgtactaaatagcgaatcgcagaacaatagcaatttattcaaatttcgcta 16733777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 76 - 119
Target Start/End: Complemental strand, 4432 - 4388
Alignment:
Q  76 actaattagcatatcac-aaacaatagcaatttgttcaaatttcg 119  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||    
T  4432 actaaatagcatatcccgaaacaatagcaatttgttcaaatttcg 4388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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