View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14195_high_21 (Length: 308)

Name: NF14195_high_21
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14195_high_21
NF14195_high_21
[»] chr8 (9 HSPs)
chr8 (21-308)||(9624261-9624565)
chr8 (207-302)||(54218-54315)
chr8 (174-302)||(29610981-29611112)
chr8 (183-259)||(7591382-7591459)
chr8 (183-302)||(15001514-15001636)
chr8 (183-299)||(10932787-10932905)
chr8 (183-259)||(30501238-30501315)
chr8 (183-259)||(41548711-41548788)
chr8 (174-302)||(16595076-16595206)
[»] chr5 (3 HSPs)
chr5 (174-302)||(4689615-4689746)
chr5 (177-237)||(14011173-14011233)
chr5 (180-259)||(26180217-26180297)
[»] scaffold0025 (1 HSPs)
scaffold0025 (183-259)||(5365-5442)
[»] chr7 (2 HSPs)
chr7 (183-259)||(1363733-1363810)
chr7 (174-259)||(21408539-21408625)
[»] chr4 (8 HSPs)
chr4 (183-259)||(26083435-26083512)
chr4 (183-259)||(50178405-50178482)
chr4 (183-259)||(50729455-50729532)
chr4 (177-237)||(9807273-9807334)
chr4 (183-259)||(11056138-11056215)
chr4 (191-259)||(20517943-20518012)
chr4 (191-259)||(36497313-36497382)
chr4 (183-259)||(44640419-44640496)
[»] chr3 (4 HSPs)
chr3 (183-259)||(19906856-19906933)
chr3 (183-259)||(41682967-41683044)
chr3 (183-259)||(3867563-3867640)
chr3 (183-259)||(50386370-50386447)
[»] chr1 (5 HSPs)
chr1 (183-259)||(42512765-42512842)
chr1 (174-242)||(47242502-47242571)
chr1 (177-229)||(7146892-7146945)
chr1 (183-259)||(7837235-7837312)
chr1 (174-259)||(31574456-31574541)
[»] chr2 (3 HSPs)
chr2 (174-237)||(83385-83449)
chr2 (183-252)||(6896268-6896338)
chr2 (174-237)||(38623215-38623279)
[»] chr6 (6 HSPs)
chr6 (185-259)||(9614067-9614142)
chr6 (183-302)||(18597117-18597239)
chr6 (183-259)||(10485250-10485327)
chr6 (177-221)||(14925170-14925215)
chr6 (177-237)||(14925409-14925470)
chr6 (180-259)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 308
Target Start/End: Complemental strand, 9624565 - 9624261
Alignment:
Q  21 atcatcagatagaaaaataaacggtctaactctatatcatgttaaaaagcacgattga----------aagaaaacaaattgagagaaagatgaattatt 110  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||| |||    
T  9624565 atcataagatagaaaaataaacggtctaactctatatcatgttaaaaagcacgattgagcccaactaaaagaaaacaaattgagagaaagatgaatcatt 9624466  T
Q  111 tgagataagtcaaat-------atgatacaattaggtgcgtttgatctgctnnnnnnntgaagaacatggcatgacatgacaacttcagttgtacactgt 203  Q
    |||||||||||||||       |||||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||||||||||||||||    
T  9624465 tgagataagtcaaatgaaaaatatgatacaattaggtgcgtttgatctgctaaaaaaatgaagaacatgacatgacatgacaacttcagttgtacactgt 9624366  T
Q  204 ttgtttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccataacacaactttttgtt 303  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9624365 ttatttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccacaacacaactttttgtt 9624266  T
Q  304 tcatg 308  Q
    |||||    
T  9624265 tcatg 9624261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 54315 - 54218
Alignment:
Q  207 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgctaaaccataacacaactttttgt 302  Q
    ||||||||| |||||||| |||| ||||| | ||| ||||| |||||||||||  |||||||||| | || ||||||||||| | |||||||||||||    
T  54315 tttgtaaaactgtttctgagacatgacaatccggacacaagggacatgacaaaaacataaatttttgtcctttgctaaaccacatcacaactttttgt 54218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 302
Target Start/End: Original strand, 29610981 - 29611112
Alignment:
Q  174 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttc 270  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||| |||||| |   |||||||     
T  29610981 catgacagaacaacttcagttgtccaatgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaattttt 29611080  T
Q  271 gacccttgctaaaccataacacaactttttgt 302  Q
    | |||| || |||||| |||||||||||||||    
T  29611081 gtccctcgccaaaccacaacacaactttttgt 29611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 7591382 - 7591459
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  7591382 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 7591459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 302
Target Start/End: Complemental strand, 15001636 - 15001514
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttcgacccttgc 279  Q
    |||||||||||||| || |||||| ||||||||| |||||| |||||| ||||||| |||| ||| |||||  ||  ||||  ||||||| | ||||  |    
T  15001636 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaggacaaactggaggcaatagacagaacaaaaactgaaatttttgtccctcac 15001537  T
Q  280 taaaccataacacaactttttgt 302  Q
     |||||| |||||||||||||||    
T  15001536 caaaccacaacacaactttttgt 15001514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 10932905 - 10932787
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaaca-taaattttcgacccttgct 280  Q
    |||||||||||||||   |||||| ||| ||||||||||| ||||||||||||||   ||| |||||||||||| ||| | |||| ||| | ||||  ||    
T  10932905 acaacttcagttgtatggtgtttgatttataaaattgtttatgggacaagacaaagtagaggcaagagacatgataaaaactaaaattttgtccctcact 10932806  T
Q  281 aaaccataacacaactttt 299  Q
    |||||| | ||||||||||    
T  10932805 aaaccacatcacaactttt 10932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 30501315 - 30501238
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||  || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  30501315 acaacttcagttgcccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 30501238  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 41548788 - 41548711
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| |  ||| ||||||| |||| ||||||||| ||||||    
T  41548788 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagatacatgacaaactggaggcaagagacaggacaaa 41548711  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 302
Target Start/End: Original strand, 16595076 - 16595206
Alignment:
Q  174 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttc 270  Q
    ||||||| ||||||  |||||||| | |||||| |||||||| ||||||||||||||  |||||| | || |||| |||| |||  |||||| || |||     
T  16595076 catgacaggacaacaccagttgtatattgtttgatttgtaaa-ttgtttctgggacagaacaaactgtaggcaagggacaggacaaaaacatgaagtttt 16595174  T
Q  271 gacccttgctaaaccataacacaactttttgt 302  Q
    | |||| ||||| ||| |||||||||||||||    
T  16595175 gtccctcgctaatccacaacacaactttttgt 16595206  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 302
Target Start/End: Original strand, 4689615 - 4689746
Alignment:
Q  174 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttc 270  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||  || | |||||     
T  4689615 catgacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaacacatattttt 4689714  T
Q  271 gacccttgctaaaccataacacaactttttgt 302  Q
    | ||||  | |||||| |||||||||||||||    
T  4689715 gtccctcaccaaaccacaacacaactttttgt 4689746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 14011173 - 14011233
Alignment:
Q  177 gacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaac 237  Q
    |||| |||||||||||||||||  |||||| |||| |||||||||  |||||| |||||||    
T  14011173 gacaggacaacttcagttgtactatgtttgattgtgaaattgttttagggacatgacaaac 14011233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 26180217 - 26180297
Alignment:
Q  180 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    ||||||||||||||| |||| | |||| ||||||||| ||||| ||||||| || |||  |||||||| ||| ||||||||    
T  26180217 atgacaacttcagttatacaatatttgatttgtaaaactgtttttgggacatgataaattggagacaaaagatatgacaaa 26180297  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 5365 - 5442
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  5365 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 5442  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 1363810 - 1363733
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||||||||||  | ||| ||||||| |||| |||| |||||||||||    
T  1363810 acaacttcagttgtccagtgtttgatttgtaaaattgtttcatgtacaggacaaactggaggcaagggacatgacaaa 1363733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 21408539 - 21408625
Alignment:
Q  174 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||| ||  ||||||||| | |||| ||||||||  ||||| |||||||| |||||| |||| |||| |||||||||||    
T  21408539 catgacatgacatctctagttgtacaatatttgatttgtaaagctgtttttgggacaacacaaactggaggcaagggacatgacaaa 21408625  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 26083512 - 26083435
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    ||||||||||||||  | |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||||||||||    
T  26083512 acaacttcagttgtttagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacatgacaaa 26083435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 50178405 - 50178482
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  50178405 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 50178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 50729455 - 50729532
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||||||||||    
T  50729455 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacatgacaaa 50729532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 9807334 - 9807273
Alignment:
Q  177 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 237  Q
    |||| ||||||||||||||| || |||||| ||||||||| |||||| || |||||||||||    
T  9807334 gacaggacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaac 9807273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 11056215 - 11056138
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| |||| |||| ||||||    
T  11056215 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaa 11056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 20517943 - 20518012
Alignment:
Q  191 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||| || |||||| ||||||||| |||||| || ||||||||||| |||| ||||||||| ||||||    
T  20517943 agttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagagacaggacaaa 20518012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 259
Target Start/End: Complemental strand, 36497382 - 36497313
Alignment:
Q  191 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||| || |||||| ||||||||| |||||| || ||| ||||||| |||||||||||||| ||||||    
T  36497382 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggagacaagagacaggacaaa 36497313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 44640496 - 44640419
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||| | | |||||||  ||| ||||||||| ||||||    
T  44640496 acaacttcagttgtacagtgtttgatttgtaaaactgtttatggaaaatgacaaactagaggcaagagacaagacaaa 44640419  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 19906933 - 19906856
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||| ||||||    
T  19906933 acaacttcagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacaggacaaa 19906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 41682967 - 41683044
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  41682967 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaagacaaa 41683044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 3867563 - 3867640
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||| ||||||| |  |||||| ||||||||| |||||| ||||||  ||| || |||||||||||||||||||||    
T  3867563 acaactccagttgtccggtgtttgatttgtaaaactgtttcagggacagaacatactggagacaagagacatgacaaa 3867640  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 50386370 - 50386447
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||| |||||||  | |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||||||||||    
T  50386370 acaactccagttgtctagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacatgacaaa 50386447  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 42512765 - 42512842
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  42512765 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 42512842  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Original strand, 47242502 - 47242571
Alignment:
Q  174 catgacatgacaacttcagttgtacactgttt-gtttgtaaaattgtttctgggacaagacaaacgggag 242  Q
    ||||||||||||||||||||||||   |||||  ||||||||||||||| ||||||| ||||||| ||||    
T  47242502 catgacatgacaacttcagttgtatggtgtttaatttgtaaaattgtttatgggacatgacaaactggag 47242571  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 7146945 - 7146892
Alignment:
Q  177 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggaca 229  Q
    ||||| ||||||||||||||| | |||||| ||||||||||||||| |||||||    
T  7146945 gacataacaacttcagttgtatagtgtttgatttgtaaaattgtttttgggaca 7146892  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 7837312 - 7837235
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||  ||| |||| |||||||||||    
T  7837312 acaacttcagttgttcagtgtttgatttgtaaaactgtttcaggaacatgacaaactagaggcaagggacatgacaaa 7837235  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 259
Target Start/End: Complemental strand, 31574541 - 31574456
Alignment:
Q  174 catgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||||||||||||||||||||||| | ||  ||||||||| | ||||    |||| |||||| ||||| |||| ||||||||||    
T  31574541 catgacatgacaacttcagttgtacaattttgatttgtaaaactatttcaaaaacaaaacaaactggagataagaaacatgacaaa 31574456  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 83449 - 83385
Alignment:
Q  174 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 237  Q
    ||||||| |||||||||||||| ||| |||||| ||||||||| ||||| ||||||| |||||||    
T  83449 catgacaagacaacttcagttgcacagtgtttgatttgtaaaactgtttgtgggacatgacaaac 83385  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 6896338 - 6896268
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagaca 252  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||| |||||| |||| |||| ||||    
T  6896338 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaaaacaaactggaggcaagggaca 6896268  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 38623215 - 38623279
Alignment:
Q  174 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 237  Q
    |||||||| |||||||||||| | || |||||| ||||||||| |||||| |||||| |||||||    
T  38623215 catgacataacaacttcagttatccaatgtttgatttgtaaaactgtttcagggacaggacaaac 38623279  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 9614142 - 9614067
Alignment:
Q  185 aacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    ||||||||||||||| |||||| ||||||||| ||||||  ||||| || |||| |||| |||| |||||||||||    
T  9614142 aacttcagttgtacaatgtttgatttgtaaaactgtttcaaggacaggataaactggaggcaagggacatgacaaa 9614067  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 302
Target Start/End: Original strand, 18597117 - 18597239
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgc 279  Q
    |||| ||||||||| || |||||| ||||||||| |||||| |||| | ||||||| |||| |||| |||||||||||  |  ||||||| | ||||  |    
T  18597117 acaatttcagttgttcagtgtttgatttgtaaaactgtttcagggatatgacaaaccggaggcaagggacatgacaaaatctgaaatttttgtccctcac 18597216  T
Q  280 taaaccataacacaactttttgt 302  Q
     |||||| |||||||||||||||    
T  18597217 caaaccacaacacaactttttgt 18597239  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 10485327 - 10485250
Alignment:
Q  183 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    |||||| ||||||| || |||||| ||||||||||| |||| || ||| ||||||| |||| ||||||||| ||||||    
T  10485327 acaactccagttgtccagtgtttgatttgtaaaattatttcaggtacaggacaaactggaggcaagagacaggacaaa 10485250  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 14925170 - 14925215
Alignment:
Q  177 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgttt 221  Q
    |||||||||||||||||||| || |||||| |||||||||||||||    
T  14925170 gacatgacaacttcagttgtccagtgtttgatttgtaaaattgttt 14925215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 14925409 - 14925470
Alignment:
Q  177 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 237  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||    
T  14925409 gacatgacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaac 14925470  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 259
Target Start/End: Original strand, 35004084 - 35004164
Alignment:
Q  180 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 259  Q
    ||||||||| ||||||| |  |||||| |||||||||  |||| | |||||||| |||| |||||||||||||| ||||||    
T  35004084 atgacaactccagttgtgcggtgtttgatttgtaaaacggtttataggacaagataaaccggagacaagagacaagacaaa 35004164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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