View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14195_high_5 (Length: 476)
Name: NF14195_high_5
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14195_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 2479991 - 2480075
Alignment:
| Q |
29 |
aacacataatgaggttgacgttctcacattggtatttctaaagaaaggtatgaacactttgtatcctttcttcaacaataaattg |
113 |
Q |
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| T |
2479991 |
aacacataatgaggttgacgttctcacattggtatttctaaagaaaggtatgaacactttgtatcctttcttcaacaataaattg |
2480075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 247 - 376
Target Start/End: Original strand, 2480253 - 2480375
Alignment:
| Q |
247 |
ttttcacctagtatgtacctaacaaatgtgtattctcacttgatttcaaactgaatctta-ttttgtgtacaaattatgcaattctttatcttgcagtgt |
345 |
Q |
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| T |
2480253 |
ttttcacctagtatgttcctaacaaatgtgtattctcacctgatttcaaactgaatcttatttttgtgtccaaattatgcaat--------ttgcagtgt |
2480344 |
T |
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| Q |
346 |
tcaatttctcactgataaatatgtgctacaa |
376 |
Q |
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| T |
2480345 |
tcaatttctcgctgataaatatgtgctacaa |
2480375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 114 - 153
Target Start/End: Original strand, 2480138 - 2480177
Alignment:
| Q |
114 |
tgttatctcatgctacttacatgttaattttactttttgg |
153 |
Q |
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| T |
2480138 |
tgttatctcatgctatttacatgttaattttactttttgg |
2480177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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