View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14195_low_2 (Length: 343)

Name: NF14195_low_2
Description: NF14195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14195_low_2
NF14195_low_2
[»] scaffold0653 (1 HSPs)
scaffold0653 (167-321)||(4710-4864)
[»] chr7 (18 HSPs)
chr7 (167-321)||(9244898-9245052)
chr7 (167-312)||(9260930-9261075)
chr7 (15-130)||(9263399-9263517)
chr7 (14-130)||(9267678-9267798)
chr7 (14-125)||(9263106-9263221)
chr7 (167-246)||(19142365-19142444)
chr7 (167-246)||(20741764-20741843)
chr7 (167-213)||(20053632-20053678)
chr7 (167-244)||(232224-232300)
chr7 (167-207)||(4876719-4876759)
chr7 (166-245)||(17915983-17916062)
chr7 (167-213)||(19842132-19842178)
chr7 (167-244)||(17919125-17919202)
chr7 (173-245)||(8807819-8807891)
chr7 (120-155)||(9267633-9267668)
chr7 (182-252)||(8106061-8106131)
chr7 (167-213)||(10983391-10983437)
chr7 (128-160)||(9263322-9263354)
[»] chr8 (10 HSPs)
chr8 (167-251)||(13645700-13645784)
chr8 (167-251)||(13746125-13746209)
chr8 (167-245)||(18566211-18566289)
chr8 (167-245)||(5826706-5826784)
chr8 (167-243)||(23432550-23432626)
chr8 (167-236)||(241166-241235)
chr8 (167-236)||(794521-794590)
chr8 (167-241)||(5829311-5829385)
chr8 (167-208)||(211049-211090)
chr8 (167-208)||(724672-724713)
[»] chr2 (11 HSPs)
chr2 (167-246)||(26654312-26654391)
chr2 (167-246)||(26652769-26652848)
chr2 (170-245)||(16151849-16151924)
chr2 (167-245)||(24216391-24216469)
chr2 (179-246)||(21547874-21547941)
chr2 (167-213)||(8686072-8686118)
chr2 (179-229)||(22311203-22311253)
chr2 (167-213)||(25348484-25348530)
chr2 (179-252)||(21585052-21585125)
chr2 (179-246)||(18848762-18848829)
chr2 (180-213)||(17417097-17417130)
[»] chr4 (7 HSPs)
chr4 (167-241)||(8912073-8912147)
chr4 (167-245)||(22316331-22316409)
chr4 (167-242)||(12333717-12333792)
chr4 (167-245)||(16321822-16321900)
chr4 (167-229)||(22222328-22222391)
chr4 (179-213)||(20245766-20245800)
chr4 (167-235)||(5842452-5842520)
[»] chr6 (13 HSPs)
chr6 (169-250)||(19134122-19134203)
chr6 (167-245)||(10482474-10482552)
chr6 (167-246)||(225841-225920)
chr6 (167-246)||(239458-239537)
chr6 (167-250)||(27124713-27124796)
chr6 (167-245)||(21686654-21686732)
chr6 (167-245)||(14201699-14201777)
chr6 (167-208)||(19731922-19731963)
chr6 (167-245)||(7775101-7775178)
chr6 (183-229)||(18614925-18614970)
chr6 (179-213)||(26239017-26239051)
chr6 (167-213)||(28952275-28952321)
chr6 (167-204)||(1637048-1637085)
[»] chr5 (6 HSPs)
chr5 (167-245)||(9824677-9824754)
chr5 (168-245)||(28760859-28760936)
chr5 (179-252)||(24492048-24492121)
chr5 (167-213)||(25570152-25570198)
chr5 (167-251)||(21215297-21215381)
chr5 (167-245)||(24884857-24884935)
[»] chr3 (9 HSPs)
chr3 (168-245)||(13340391-13340468)
chr3 (168-245)||(13177491-13177568)
chr3 (167-233)||(11360465-11360531)
chr3 (168-213)||(9323981-9324026)
chr3 (167-207)||(15330957-15330997)
chr3 (170-213)||(21318777-21318820)
chr3 (179-251)||(14426867-14426939)
chr3 (179-229)||(16198651-16198701)
chr3 (183-229)||(46349433-46349479)
[»] scaffold0002 (1 HSPs)
scaffold0002 (168-245)||(129420-129497)
[»] scaffold0300 (2 HSPs)
scaffold0300 (167-213)||(12480-12526)
scaffold0300 (167-244)||(7761-7838)
[»] scaffold0041 (1 HSPs)
scaffold0041 (167-245)||(26893-26971)
[»] scaffold0520 (1 HSPs)
scaffold0520 (167-213)||(7629-7675)
[»] chr1 (4 HSPs)
chr1 (167-213)||(9985227-9985273)
chr1 (167-251)||(24005853-24005935)
chr1 (179-246)||(15650715-15650782)
chr1 (179-229)||(15787406-15787456)
[»] scaffold0711 (1 HSPs)
scaffold0711 (167-201)||(1309-1343)
[»] scaffold0053 (1 HSPs)
scaffold0053 (179-244)||(28326-28391)
[»] scaffold0256 (1 HSPs)
scaffold0256 (181-213)||(12811-12843)


Alignment Details
Target: scaffold0653 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 167 - 321
Target Start/End: Original strand, 4710 - 4864
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaaacaatccatcagaga 266  Q
    ||||| || |||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  4710 atatgctaatattccaattattcttcaatagtttgttatcatcaaaatcctagatgaattgtatgaacaactcttgttccgaaaaacaatccatcagaga 4809  T
Q  267 agaaaagaatacatgccctaacatatttagaagccaccctagaaggctccaacca 321  Q
    |||||| ||||| | |||  |||||||||||||||||| ||||||||||||||||    
T  4810 agaaaataatacctaccccgacatatttagaagccaccgtagaaggctccaacca 4864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 8e-49; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 167 - 321
Target Start/End: Complemental strand, 9245052 - 9244898
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaaacaatccatcagaga 266  Q
    ||||| || |||||||||| |||||||||| ||||||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  9245052 atatgctaatattccaattattcttcaatagtttgttatcatcaaaatcctagatgaattgtatgaacaactcttgttccgaaaaacaatccatcagaga 9244953  T
Q  267 agaaaagaatacatgccctaacatatttagaagccaccctagaaggctccaacca 321  Q
    |||||| ||||| | |||  |||||||||||||||||| ||||||||||||||||    
T  9244952 agaaaataatacctaccccgacatatttagaagccaccgtagaaggctccaacca 9244898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 167 - 312
Target Start/End: Complemental strand, 9261075 - 9260930
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaaacaatccatcagaga 266  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  9261075 atatgttagtattccaattattcttcaatactttgttatcatcaaaatcctagatgaattgtatgaacaactgttgttccgaaaaacaatccatcagaga 9260976  T
Q  267 agaaaagaatacatgccctaacatatttagaagccaccctagaagg 312  Q
    |||||| ||||| | |||  |||||||||||||||||| |||||||    
T  9260975 agaaaataatacctaccccgacatatttagaagccaccgtagaagg 9260930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 9263517 - 9263399
Alignment:
Q  15 agtgctaagtcatattctgtttttcaatt---agtttcttaaactttacaagttcgacacaattcatcttgcggacttatttgatcaagaagaatcaccc 111  Q
    ||||| |||||||||||||||||||||||   ||||||||||||||||||||||   ||||||||||||||| |||||||||||||||||||||||||||    
T  9263517 agtgccaagtcatattctgtttttcaatttttagtttcttaaactttacaagttaaccacaattcatcttgcagacttatttgatcaagaagaatcaccc 9263418  T
Q  112 atgaggaagaagaagaaag 130  Q
    |||||||||||||||||||    
T  9263417 atgaggaagaagaagaaag 9263399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 9267798 - 9267678
Alignment:
Q  14 gagtgctaagtcatattctgtttttcaatt---agtttcttaaactttacaagttcga-cacaattcatcttgcggacttatttgatcaagaagaatcac 109  Q
    |||||| |||||||||||||||||||||||   ||||||||||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||    
T  9267798 gagtgccaagtcatattctgtttttcaatttttagtttcttaaactttacaagttaactcacaattcatcttgcagacttatttgatcaagaagaatcac 9267699  T
Q  110 ccatgaggaagaagaagaaag 130  Q
    ||||||||||| |||||||||    
T  9267698 ccatgaggaagtagaagaaag 9267678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 9263106 - 9263221
Alignment:
Q  14 gagtgctaagtcatattctgtttttcaatt---agtttcttaaactttacaagttcga-cacaattcatcttgcggacttatttgatcaagaagaatcac 109  Q
    |||||| || ||||||||||||||| ||||   ||||||||||||||||||||||    ||||||||||||||| |||||||||||||||||||||||||    
T  9263106 gagtgccaattcatattctgttttttaatttttagtttcttaaactttacaagttaactcacaattcatcttgcagacttatttgatcaagaagaatcac 9263205  T
Q  110 ccatgaggaagaagaa 125  Q
    ||||||||||||||||    
T  9263206 ccatgaggaagaagaa 9263221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 19142444 - 19142365
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||| |||||| ||||| | ||||||| |||||||||    
T  19142444 atatgttagtatttcaattgttctttaatactttgttatcatcaaaatcctagaggaattatttgaaccattcttgttcc 19142365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 20741843 - 20741764
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||| |||||| ||||| | ||||||| |||||||||    
T  20741843 atatgttagtatttcaattgttctttaatactttgttatcatcaaaatcctagaggaattatttgaaccattcttgttcc 20741764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 20053632 - 20053678
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  20053632 atatgttagtattccaattgttcttcaatactttgttatcatcaaaa 20053678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 167 - 244
Target Start/End: Complemental strand, 232300 - 232224
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgtt 244  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||| | || | || |||||||||||| |||||||    
T  232300 atatgttagtattccaattgttcttcaatattttgttatcatcaaaaccttata-gacttgtatgaaccattcttgtt 232224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 4876719 - 4876759
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatca 207  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4876719 atatgttagtattccaattgttcttcaatactttgttatca 4876759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 245
Target Start/End: Original strand, 17915983 - 17916062
Alignment:
Q  166 tatatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||||||||||| |||||||||||||||||| ||||||| |||| |  |||  | |||||||||||| ||||||||    
T  17915983 tatatgttagtattcctattgttcttcaatactttattatcatcaaaatctaagagaacttgtatgaaccattcttgttc 17916062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 19842178 - 19842132
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  19842178 atatgttagtattgcaattgttcttcaatactttgttatcatcaaaa 19842132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 17919125 - 17919202
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgtt 244  Q
    |||||||| ||||| ||||||||||||||| ||| |||||||  |||  |||||||| |||||||||||| |||||||    
T  17919125 atatgttaatattctaattgttcttcaatatttttttatcatcgaaattctagatgacttgtatgaaccattcttgtt 17919202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 8807819 - 8807891
Alignment:
Q  173 tagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||| ||| ||||||||||||||| ||  ||| |||| |||||| || |||||||||||| ||||||||    
T  8807819 tagtattctaatcgttcttcaatactttttttacatcaaaaccctagaggacttgtatgaaccattcttgttc 8807891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 9267668 - 9267633
Alignment:
Q  120 gaagaagaaagttagagttgggagcataatcatgta 155  Q
    |||||||||||||||||||||||||||||| |||||    
T  9267668 gaagaagaaagttagagttgggagcataattatgta 9267633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Original strand, 8106061 - 8106131
Alignment:
Q  182 aattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaaa 252  Q
    |||| ||||| |||||||||||||||| |||| |||||| ||||||||  ||||| | ||||||| |||||    
T  8106061 aattattctttaatactttgttatcatcaaaaccctagaggaattgtacaaaccaattttgttccaacaaa 8106131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 10983437 - 10983391
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    |||||||| ||| | ||||||||||||||||||||||||||| ||||    
T  10983437 atatgttattatactaattgttcttcaatactttgttatcatcaaaa 10983391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 9263322 - 9263354
Alignment:
Q  128 aagttagagttgggagcataatcatgtatatat 160  Q
    |||||||||||||||||||||| ||||||||||    
T  9263322 aagttagagttgggagcataattatgtatatat 9263354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 9e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 13645700 - 13645784
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaa 251  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||| ||||    
T  13645700 atatgttagtataccaattgttattcaatactttgttatcatcaaaatcctagaggaattgtatgaaccattcttgttccaacaa 13645784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 13746125 - 13746209
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaa 251  Q
    |||||||||||| ||||||||| ||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||||| ||||    
T  13746125 atatgttagtataccaattgttattcaatactttgttatcatcaaaatcctagaggaattgtatgaaccattcttgttccaacaa 13746209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 18566211 - 18566289
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||| | || |||||||||||| ||||||||    
T  18566211 atatgttagtattccaattgttcttcaatactttgttatcatcaaaaccctaaaggacttgtatgaaccattcttgttc 18566289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 5826706 - 5826784
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||| ||||||||||||||| ||||||||||||||||| |||| | ||||  | |||||||||||| ||||||||    
T  5826706 atatgttaatattccaattgttctgcaatactttgttatcatcaaaaccttagaaaacttgtatgaaccattcttgttc 5826784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 243
Target Start/End: Complemental strand, 23432626 - 23432550
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgt 243  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||| | |||| || |||||||||| | ||||||    
T  23432626 atatgttagtattccaattgttcttcgatactttattatcatcaaaaccttagaggacttgtatgaacgattcttgt 23432550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 241166 - 241235
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaacca 236  Q
    |||||||||||||||||||||||||||| | ||||||||||| |||| || |||  | ||||||||||||    
T  241166 atatgttagtattccaattgttcttcaacagtttgttatcatcaaaatccaagagaacttgtatgaacca 241235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 794521 - 794590
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaacca 236  Q
    |||||||||||||||||||||||||||| | ||||||||||| |||| || |||  | ||||||||||||    
T  794521 atatgttagtattccaattgttcttcaacagtttgttatcatcaaaatccaagagaacttgtatgaacca 794590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 5829311 - 5829385
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactctt 241  Q
    |||||||  ||||||||||||||| ||||||||||||||||| |||| | ||||  | |||||||||||| ||||    
T  5829311 atatgtttatattccaattgttctgcaatactttgttatcatcaaaaccttagagaacttgtatgaaccattctt 5829385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 211090 - 211049
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcat 208  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  211090 atatgttagtattccaattgttcttcaacagtttgttatcat 211049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 724713 - 724672
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcat 208  Q
    |||||||||||||||||||||||||||| | |||||||||||    
T  724713 atatgttagtattccaattgttcttcaacagtttgttatcat 724672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 26654391 - 26654312
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| |  ||| |||||||||||||||||||||||||    
T  26654391 atatgttagtcttccaattgttcttcaatactttgttatcatcaaaacctcagaggaattgtatgaaccactcttgttcc 26654312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 26652848 - 26652769
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  | ||||  |||||||||||||| |||| ||||    
T  26652848 atatgttagtattccaattgttcttcaatactttgttatcatcaaatccttagagtaattgtatgaaccattctttttcc 26652769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 16151924 - 16151849
Alignment:
Q  170 tgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||| || || ||| ||||| ||||||||    
T  16151924 tgttagtattccaattgttcttcaatactctgttatcatcaaaaccctagaggacttctataaaccattcttgttc 16151849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 24216391 - 24216469
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||| ||| |||||||||||||||||||| ||||||||| |||| || |||| | |||||||||||| ||||||||    
T  24216391 atatgttcgtaatccaattgttcttcaatactctgttatcatcaaaacccaagataacttgtatgaaccattcttgttc 24216469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 21547941 - 21547874
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    ||||||||||||||||||||||| |||||| |||| | |||| ||||||||  ||||||| |||||||    
T  21547941 tccaattgttcttcaatactttggtatcatcaaaaccttagaggaattgtacaaaccacttttgttcc 21547874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 8686072 - 8686118
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    |||||||||||||||||||||||||| ||||||| ||||||| ||||    
T  8686072 atatgttagtattccaattgttcttcgatactttattatcatcaaaa 8686118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 22311253 - 22311203
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgta 229  Q
    |||||||||||||||||||||||||||||| |||| | |||| ||||||||    
T  22311253 tccaattgttcttcaatactttgttatcatcaaaaccttagaggaattgta 22311203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 25348484 - 25348530
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||    
T  25348484 atatgttagtatatcaattgttcttcaatactttgttatcatcaaaa 25348530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 21585052 - 21585125
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaaa 252  Q
    |||||| ||||||||||||||||||||| | |||| | |||| ||||||||  ||||||| ||||||| |||||    
T  21585052 tccaatcgttcttcaatactttgttatcctcaaaaccttagaggaattgtacaaaccacttttgttccaacaaa 21585125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 18848762 - 18848829
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    |||||||||||||||||||||||||||||| ||||  |||||  |||||||  ||||| | |||||||    
T  18848762 tccaattgttcttcaatactttgttatcataaaaactctagagaaattgtacaaaccaattttgttcc 18848829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 213
Target Start/End: Complemental strand, 17417130 - 17417097
Alignment:
Q  180 ccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||||||||||||||||||||| ||||    
T  17417130 ccaattgttcttcaatactttgttatcatcaaaa 17417097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 8912073 - 8912147
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactctt 241  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||||| ||||    
T  8912073 atatgttagtattccaattgttcttcaatgctttgttatcatcaaaatcctagaggaattgtatgaaccattctt 8912147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 22316409 - 22316331
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||| ||||||||    
T  22316409 atatgttagtattccaattgttcttcaatactttgttatcatcaaaatcctagaggacttgtacgaaccattcttgttc 22316331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 242
Target Start/End: Complemental strand, 12333792 - 12333717
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttg 242  Q
    ||||||||||| |||||||||||||||||| ||||||||||| |||| |||||| ||||| |||||||||||||||    
T  12333792 atatgttagtaatccaattgttcttcaatattttgttatcatcaaaaccctagaggaattttatgaaccactcttg 12333717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 16321900 - 16321822
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||||||||| ||||||||||||||||||||||||||| |||| ||||||  | |||||||||||| ||||||||    
T  16321900 atatgttagtattcaaattgttcttcaatactttgttatcatcaaaaccctagagaacttgtatgaaccattcttgttc 16321822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 22222391 - 22222328
Alignment:
Q  167 atatgttagtat-tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgta 229  Q
    |||| ||||||| |||| ||||||||||||||||||||||||| |||| | |||| ||||||||    
T  22222391 atatattagtatgtccacttgttcttcaatactttgttatcatcaaaaccttagaggaattgta 22222328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 20245766 - 20245800
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaa 213  Q
    |||||||||||||||||||||||||||||| ||||    
T  20245766 tccaattgttcttcaatactttgttatcatcaaaa 20245800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 5842520 - 5842452
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaacc 235  Q
    ||||||||||||| | ||| || ||||||||||||||||||| ||||  |||||  | |||||||||||    
T  5842520 atatgttagtatttctattatttttcaatactttgttatcatcaaaactctagagaacttgtatgaacc 5842452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 169 - 250
Target Start/End: Original strand, 19134122 - 19134203
Alignment:
Q  169 atgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgaca 250  Q
    ||||||||||||||||||||||||||||||||| |||||| |||| |||||| |||||||||||| || |||||||| ||||    
T  19134122 atgttagtattccaattgttcttcaatactttgatatcatcaaaatcctagaggaattgtatgaatcattcttgttctgaca 19134203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 10482474 - 10482552
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||||||||||||||||| ||||||||||||||||| | |||| | |||| ||||||||||||||| ||||||||    
T  10482474 atatgttagtattccaattgtttttcaatactttgttatcttcaaaatcttagaggaattgtatgaaccattcttgttc 10482552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 225841 - 225920
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    ||||||||| ||| ||||| ||||| ||||||||||||| || |||| |||||| |||||||||||||||||||||||||    
T  225841 atatgttaggatttcaattcttcttaaatactttgttattatcaaaaccctagaggaattgtatgaaccactcttgttcc 225920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 239537 - 239458
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    ||||||||||||||||||| ||||| |||||||||||||||| ||||  ||| |  ||||||||||||||||||||||||    
T  239537 atatgttagtattccaatttttcttaaatactttgttatcatcaaaactctaaagaaattgtatgaaccactcttgttcc 239458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 27124713 - 27124796
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgaca 250  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||| || |||  | |||||||||||| |||||||| ||||    
T  27124713 atatgttagtataccaattgttcttcaatactttgttatcatcaaaacccaagagaacttgtatgaaccattcttgttctgaca 27124796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 21686732 - 21686654
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| || |||  | || ||||||||| ||||||||    
T  21686732 atatgttagtattccaattgttcttcaatactttgtcatcataaaaacccaagagaacttctatgaaccattcttgttc 21686654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 14201699 - 14201777
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||||||||||||| ||| |||||||||||||||| |||| || | || | |||||||||||| | ||||||    
T  14201699 atatgttagtattccaattgtactttaatactttgttatcatcaaaacccaaaataacttgtatgaaccatttttgttc 14201777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 208
Target Start/End: Original strand, 19731922 - 19731963
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcat 208  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  19731922 atatgttagtattccaattgttcatcaatactttgttatcat 19731963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 7775178 - 7775101
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||| |||||||| ||||| |||||||||||||||||||||| |||| || |||  | |||||||||||| ||||||||    
T  7775178 atatattagtatttcaattattcttcaatactttgttatcatcaaaa-cccagagaacttgtatgaaccattcttgttc 7775101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 18614970 - 18614925
Alignment:
Q  183 attgttcttcaatactttgttatcatgaaaagcctagatgaattgta 229  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||    
T  18614970 attgttcttcaatactttgttatcatcaaaa-cctagaggaattgta 18614925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 213
Target Start/End: Original strand, 26239017 - 26239051
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaa 213  Q
    |||||||||||||||||||||||||||||| ||||    
T  26239017 tccaattgttcttcaatactttgttatcatcaaaa 26239051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 28952321 - 28952275
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||| ||||| |||||||||||||||||||||| ||||||| ||||    
T  28952321 atatggtagtaatccaattgttcttcaatactttattatcatcaaaa 28952275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 1637048 - 1637085
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgtta 204  Q
    |||||||||||| | |||||||||||||||||||||||    
T  1637048 atatgttagtatacaaattgttcttcaatactttgtta 1637085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 9824677 - 9824754
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| | ||||||    
T  9824677 atatgttagtatttcaattgttcttcaatactttgttatcatcaaaa-cctagaggaattgtatgaaccatttttgttc 9824754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 28760859 - 28760936
Alignment:
Q  168 tatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||| ||||||||||||||||||||||||||||| |||| || |||  | |||||||||||| ||||||||    
T  28760859 tatgttagtataccaattgttcttcaatactttgttatcatcaaaatccaagagaatttgtatgaaccattcttgttc 28760936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 24492121 - 24492048
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaaa 252  Q
    |||||||||||||||||||||||||||||| |||| | |||| ||||||||  ||||||| ||||||| |||||    
T  24492121 tccaattgttcttcaatactttgttatcatcaaaaccttagaggaattgtacaaaccacttttgttccaacaaa 24492048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 25570152 - 25570198
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  25570152 atatgttagtaatccaattgttcttcaatactttgttatcatcaaaa 25570198  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 21215381 - 21215297
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaa 251  Q
    ||||||| |||||| ||||  ||||||||||||||||||||| |||| || | |  |||||||||||||| ||||||||| ||||    
T  21215381 atatgttcgtattctaattactcttcaatactttgttatcatcaaaatccaacagaaattgtatgaaccattcttgttccaacaa 21215297  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 24884935 - 24884857
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||||  ||||| ||||| |||||||||||||||| |||| || | |  | |||||||||||| ||||||||    
T  24884935 atatgttagtatatcaattattctttaatactttgttatcatcaaaatccaaaagaacttgtatgaaccattcttgttc 24884857  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 13340468 - 13340391
Alignment:
Q  168 tatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | |||| || |||||||||||| | ||||||    
T  13340468 tatgttagtattccaattgttcttcaatactttgttatcatcaaaaccttagaggacttgtatgaaccattgttgttc 13340391  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 13177568 - 13177491
Alignment:
Q  168 tatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| | |||| || |||||||||||| | ||||||    
T  13177568 tatgttagtattccaattgttcttcaatacttttttatcatcaaaaccttagaggacttgtatgaaccattgttgttc 13177491  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 233
Target Start/End: Complemental strand, 11360531 - 11360465
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaa 233  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||| |||||| || || ||||||    
T  11360531 atatgttagtattccaattgttcttcaatactttgtcatcatcaaaatcctagaggacttctatgaa 11360465  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 9323981 - 9324026
Alignment:
Q  168 tatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  9323981 tatgttagtattccaattgttcttcaatactttgttatcatcaaaa 9324026  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 15330997 - 15330957
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatca 207  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15330997 atatgttagtattccaattgttcttcaatactttgttatca 15330957  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 21318777 - 21318820
Alignment:
Q  170 tgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||    
T  21318777 tgttagtattccaattgttcttcaatactttattatcatcaaaa 21318820  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 14426939 - 14426867
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaa 251  Q
    ||||||||||||| |||||||||||||||| |||| | |||| ||||||||  ||||| | ||||||| ||||    
T  14426939 tccaattgttctttaatactttgttatcatcaaaatcttagaggaattgtacaaaccaattttgttccaacaa 14426867  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 16198701 - 16198651
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgta 229  Q
    ||||||| |||||||||||||||||||||  |||| | |||||||||||||    
T  16198701 tccaattattcttcaatactttgttatcaacaaaaccttagatgaattgta 16198651  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 46349433 - 46349479
Alignment:
Q  183 attgttcttcaatactttgttatcatgaaaagcctagatgaattgta 229  Q
    |||||||||||||||||||||||||| |||| | |||| ||||||||    
T  46349433 attgttcttcaatactttgttatcatcaaaatcttagaagaattgta 46349479  T

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Target: scaffold0002 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 129420 - 129497
Alignment:
Q  168 tatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||| | |||| || |||||||||||| | ||||||    
T  129420 tatgttagtattccaattgttcttcaatacttttttatcatcaaaaccttagaggacttgtatgaaccattgttgttc 129497  T

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Target: scaffold0300 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 12480 - 12526
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  12480 atatgttagtataccaattgttcttcaatactttgttatcatcaaaa 12526  T

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Target: scaffold0300; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 7761 - 7838
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgtt 244  Q
    |||||||||||| ||||||||| |||||||||||||||| || |||| || |||  | |||||||||||| |||||||    
T  7761 atatgttagtataccaattgtttttcaatactttgttatgatcaaaacccaagagaacttgtatgaaccattcttgtt 7838  T

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Target: scaffold0041 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 26893 - 26971
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttc 245  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||| |||| |  |||| |||||| || ||||||||    
T  26893 atatgttagtattccaattgttcttcgatactttgttatcatcgaaaccctataaaaattatatgaatcattcttgttc 26971  T

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Target: scaffold0520 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 7675 - 7629
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||| ||||||||||||| |||||||||||||||| ||||    
T  7675 atatgttagtaatccaattgttcttgaatactttgttatcatcaaaa 7629  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 9985227 - 9985273
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaa 213  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||    
T  9985227 atatgttagtatttcaattgttcttcaataatttgttatcatcaaaa 9985273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 251
Target Start/End: Complemental strand, 24005935 - 24005853
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttccgacaa 251  Q
    |||||||||||||| ||  | |||||| ||| |||||||||| |||| |||||| |||||||||  |||||||||||||| ||||    
T  24005935 atatgttagtattctaaaagatcttcagtacgttgttatcatcaaaaccctagaggaattgtat--accactcttgttccaacaa 24005853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 246
Target Start/End: Complemental strand, 15650782 - 15650715
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgttcc 246  Q
    |||||||||||||||||||||| ||||||| |||| | |||| ||||||||  ||||| | |||||||    
T  15650782 tccaattgttcttcaatactttattatcatcaaaaccttagaggaattgtacaaaccaattttgttcc 15650715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Complemental strand, 15787456 - 15787406
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgta 229  Q
    ||||||||||| |||||||||||||||||| |||| | |||| ||||||||    
T  15787456 tccaattgttcgtcaatactttgttatcatcaaaaccttagaggaattgta 15787406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 1343 - 1309
Alignment:
Q  167 atatgttagtattccaattgttcttcaatactttg 201  Q
    ||||||||||||||||||||||||| |||||||||    
T  1343 atatgttagtattccaattgttctttaatactttg 1309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 244
Target Start/End: Original strand, 28326 - 28391
Alignment:
Q  179 tccaattgttcttcaatactttgttatcatgaaaagcctagatgaattgtatgaaccactcttgtt 244  Q
    |||||||| ||||||||| ||||||||||| |||| | |||| ||||||||  ||||||| |||||    
T  28326 tccaattgatcttcaatattttgttatcatcaaaaccttagaggaattgtacaaaccacttttgtt 28391  T

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Target: scaffold0256 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 12811 - 12843
Alignment:
Q  181 caattgttcttcaatactttgttatcatgaaaa 213  Q
    |||||||||||||||||||||||||||| ||||    
T  12811 caattgttcttcaatactttgttatcatcaaaa 12843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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