View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_high_11 (Length: 451)
Name: NF14196_high_11
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Complemental strand, 41704297 - 41703850
Alignment:
| Q |
11 |
cataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagatttaat |
110 |
Q |
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| T |
41704297 |
cataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttggatgtgtaagatttaat |
41704198 |
T |
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| Q |
111 |
tttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaaccaattagtaactactt-ttaacaaactctaaca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | || |||| | | ||||| |
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| T |
41704197 |
tttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaa-tagtaaccaattagtaactacttttaaca |
41704099 |
T |
|
| Q |
210 |
atatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704098 |
atatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacattacaagaggtggtgtctt |
41703999 |
T |
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| Q |
310 |
cggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgtta---------------------tgtattatagtttcaaaactaagaactaa |
388 |
Q |
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| T |
41703998 |
cggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactttcaaaactaagaactaa |
41703899 |
T |
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| Q |
389 |
catgagttaattgttcattaaaacctaacaaaacgtcttagctaacaag |
437 |
Q |
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| T |
41703898 |
catgagttaattgttcattaaaacctaaaaaaacgtcttagctaacaag |
41703850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 437
Target Start/End: Original strand, 41467192 - 41467264
Alignment:
| Q |
365 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaag |
437 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
41467192 |
tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaag |
41467264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 36467105 - 36467161
Alignment:
| Q |
365 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaa |
421 |
Q |
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|||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
36467105 |
tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaa |
36467161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
| Q |
185 |
taactacttttaacaaactctaacaatatctaatgattctctaattata |
233 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
33826671 |
taactacttttaacaaactctaacaatatctatcaattcactaattata |
33826623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
| Q |
185 |
taactacttttaacaaactctaacaatatctaatgattctctaa |
228 |
Q |
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||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
10908990 |
taactacatttaacaaactctaacaatatctaataaatctctaa |
10908947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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