View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_high_12 (Length: 427)
Name: NF14196_high_12
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 24 - 419
Target Start/End: Complemental strand, 31064502 - 31064102
Alignment:
| Q |
24 |
attgttatccaaatactatattttattttatcacaataca----cgtggtaataattaagtcaagtacagttcacgagtcaaagaatttcaattattttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31064502 |
attgttatccaaatactatattttattttatcacaatacatacacgtggtaataattaagtcaagtacagttcacgagtcaaagaatttcaattattttt |
31064403 |
T |
|
| Q |
120 |
attaaaataaatgataacattgacagattcaatattataatctccatgtgaaagatctgtttcttttttattaatgatttaattaaacttagatgactta |
219 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31064402 |
attaaaatagatgataacattgacagattcaatattataatctccatgtgaaagatctgtttcttttttattaatgatttaattaaacttagatgactta |
31064303 |
T |
|
| Q |
220 |
attattcaaaatatgtattaccctactgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatgg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31064302 |
attattcaaaatatgtattaccctactgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatgg |
31064203 |
T |
|
| Q |
320 |
cgtgggggtaatatctgtcaaattagtagactcaaaggttctaagaaatttccatgtaacagg-ttccctttcaacctacttccctttttatgatattct |
418 |
Q |
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|||||||||||| |||||||||||| | ||||| ||||||||||||| |||| ||||||||| ||| |||||||||| |||||||||||||||| |||| |
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| T |
31064202 |
cgtgggggtaatgtctgtcaaattaacaaactcagaggttctaagaaagttccttgtaacaggtttctctttcaacctgcttccctttttatgattttct |
31064103 |
T |
|
| Q |
419 |
t |
419 |
Q |
| |
|
| |
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| T |
31064102 |
t |
31064102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 162 - 409
Target Start/End: Complemental strand, 31111159 - 31110910
Alignment:
| Q |
162 |
tccatgtgaaagatctgtttctttttt-attaatgatttaattaaacttagatgacttaattattcaaaatatgt-attaccctactgtttggattaggt |
259 |
Q |
| |
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|||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| | |||| |||| ||||||||| |||| |
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| T |
31111159 |
tccatgtgaatgatctgtttctttttttattaatgatttaattaaacctagatgacttaattattcaaaatatattattatcctattgtttggatcaggt |
31111060 |
T |
|
| Q |
260 |
gtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatatctgtcaaattagtagactcaaaggtt |
359 |
Q |
| |
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|||||||| ||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||| || | |||||| | |
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| T |
31111059 |
gtttggcccgaatctaagagttttagcgacagaggaattggcccaattccagcgaaatggcgtgggggaaacatctgtcaacttgacaaactcaatacat |
31110960 |
T |
|
| Q |
360 |
ctaagaaatttccatgtaacaggttccctttcaacctacttcccttttta |
409 |
Q |
| |
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|||| ||| ||||||| ||||||||| |||||||||| |||||||||||| |
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| T |
31110959 |
ctaaaaaagttccatgcaacaggttctctttcaacctgcttcccttttta |
31110910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 219 - 384
Target Start/End: Complemental strand, 31051888 - 31051722
Alignment:
| Q |
219 |
aattattcaaaatatgta-ttaccctactgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaat |
317 |
Q |
| |
|
||||||||||||||| || ||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||||||| || |||||||||||||||| |
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| T |
31051888 |
aattattcaaaatatataattatcctattgtttggattaggtgtttggcccgaatcggcgagttttaacgacagaggaataggtccaattccagcaaaat |
31051789 |
T |
|
| Q |
318 |
ggcgtgggggtaatatctgtcaaattagtagactcaaaggttctaagaaatttccatgtaacaggtt |
384 |
Q |
| |
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|||||||||| || ||||||||||||| | ||| | |||||| |||||| |||||||||||||||| |
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| T |
31051788 |
ggcgtgggggaaacatctgtcaaattaacaaactaagaggttcaaagaaagttccatgtaacaggtt |
31051722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 246 - 394
Target Start/End: Complemental strand, 31147332 - 31147184
Alignment:
| Q |
246 |
tgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatatctgtcaaattag |
345 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||| |||||||||||| || ||||||||| || ||||||||||||||| || |||||| || |
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| T |
31147332 |
tgtttgtattaggtgtttggccggaatcggagagttttaacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga |
31147233 |
T |
|
| Q |
346 |
tagactcaaaggttctaagaaatttccatgtaacaggttccctttcaac |
394 |
Q |
| |
|
| |||||| |||||||||| ||||||||||||||||| |||||||| |
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|
| T |
31147232 |
caaactcaatacttctaagaaagttccatgtaacaggttctctttcaac |
31147184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 394
Target Start/End: Complemental strand, 31165157 - 31165009
Alignment:
| Q |
246 |
tgtttggattaggtgtttggccggaatcaaggagttttagcgacagaggaattggcccaattccagcaaaatggcgtgggggtaatatctgtcaaattag |
345 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||| |||||||||||| || ||||||||| || ||||||||||||||| || |||||| || |
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|
| T |
31165157 |
tgtttgtattaggtgtttggccggaatcggagagttttcacgacagaggaataggtccaattccattaagatggcgtgggggtaacatttgtcaacttga |
31165058 |
T |
|
| Q |
346 |
tagactcaaaggttctaagaaatttccatgtaacaggttccctttcaac |
394 |
Q |
| |
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| |||||| |||||||||| ||||||||||||||||| |||||||| |
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| T |
31165057 |
caaactcaatacttctaagaaagttccatgtaacaggttctctttcaac |
31165009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 31111218 - 31111180
Alignment:
| Q |
133 |
ataacattgacagattcaatattataatctccatgtgaa |
171 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31111218 |
ataacattgacagattcaatattataatctccatgtgaa |
31111180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 162
Target Start/End: Complemental strand, 31051996 - 31051966
Alignment:
| Q |
132 |
gataacattgacagattcaatattataatct |
162 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
31051996 |
gataacattgacagattcaatattataatct |
31051966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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