View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_high_14 (Length: 402)
Name: NF14196_high_14
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 37863119 - 37862731
Alignment:
| Q |
1 |
ttgtttgtatatgtgtctaagcataagtcacttcactttgaactt-agttttaaccaaagaaatttcgcaatattaagtttgttcacagctggtaaatac |
99 |
Q |
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| T |
37863119 |
ttgtttgtatatgtgtctaagcataagtcacttcactttgaactttagttttaaccaaagaaatttcacaatattaagtttgttcacagctggtaaatac |
37863020 |
T |
|
| Q |
100 |
taacccaaacaaatgtttagatgttgaa-taaagaatgttgtgaccatggttccaaaaatctatatgaaatggctgagtgcttagccgataatatggaat |
198 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |
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| T |
37863019 |
taacccaaacaaatgtttagttgttgaagtaaagaatgttgtgaccatggttccaaaaacctatatgaaatggctgagtgcttagccgataatacggagt |
37862920 |
T |
|
| Q |
199 |
ttgttgattgattactagttcagtggaagcaatcatcctaagtaaatatcataccaggaactcattaatctagcagcaaatgtccaatcaagtttcattt |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37862919 |
ttgttgattgattactagttcagtggaagcaatcatcctaagtaaatatcataccaggaattcattaatctagcagcaaatgtccaatcaagtttcattt |
37862820 |
T |
|
| Q |
299 |
ttctttatgctagagtgttttgctttccttttacatgcaccctttacagttcattgctaatgaactgtttgttctttgagagtgattta |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37862819 |
ttctttatgctagagtgttttgctttccttttacatgcaccctctacagttcattgctaatgaactgtttgttctttgagagtgattta |
37862731 |
T |
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