View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14196_high_23 (Length: 343)

Name: NF14196_high_23
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14196_high_23
NF14196_high_23
[»] chr1 (19 HSPs)
chr1 (17-326)||(9488244-9488553)
chr1 (17-296)||(9435720-9435985)
chr1 (17-212)||(9459081-9459276)
chr1 (17-212)||(9462908-9463103)
chr1 (208-326)||(9463841-9463959)
chr1 (105-199)||(9454061-9454155)
chr1 (108-199)||(9318524-9318615)
chr1 (105-184)||(9486441-9486520)
chr1 (109-199)||(9399415-9399505)
chr1 (105-185)||(9433088-9433168)
chr1 (108-199)||(9319687-9319778)
chr1 (108-199)||(9350004-9350095)
chr1 (103-203)||(9143101-9143201)
chr1 (103-197)||(8964292-8964386)
chr1 (105-199)||(9255262-9255356)
chr1 (109-182)||(9234313-9234386)
chr1 (109-182)||(9384008-9384081)
chr1 (127-199)||(9348783-9348855)
chr1 (105-173)||(9082799-9082867)
[»] chr3 (1 HSPs)
chr3 (127-199)||(9159396-9159468)
[»] chr6 (1 HSPs)
chr6 (105-180)||(15927449-15927524)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 9488244 - 9488553
Alignment:
Q  17 aaggtagatttctgagttgtccaattccttgtacaggcattccttttggagtttgaaatggcttaggaggcatttccaaggactcgacatctccttcaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488244 aaggtagatttctgagttgtccaattccttgtacaggcattccttttggagtttgaaatggcttaggaggcatttccaaggactcgacatctccttcaag 9488343  T
Q  117 taactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagtatcttctcctcctct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488344 taactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagtatcttctcctcctct 9488443  T
Q  217 tctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactcttatgatcttcaccctcattca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9488444 tctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactcttatgatcttcactctcattca 9488543  T
Q  317 tgttccttct 326  Q
    ||||||||||    
T  9488544 tgttccttct 9488553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 9435720 - 9435985
Alignment:
Q  17 aaggtagatttctgagttgtccaattccttgtacaggcattccttttggagtttgaaatggcttaggaggcatttccaaggactcgacatctccttcaag 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||     
T  9435720 aaggtagatttctgagttgtccaattccttgtacaggcattcctttaggagtttgaaatggctttggaggcatttccaaggactcaacatctccttcaa- 9435818  T
Q  117 taactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagtatcttctcctcctct 216  Q
                 |||||||| || ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |||||||||    
T  9435819 -------------ttgttcattgacggacgatcaattggtttcatctgtatataccacaatgcaactattatcatcttcttcaatatcttttcctcctct 9435905  T
Q  217 tctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactctt 296  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9435906 tctgtaccatttcccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactctt 9435985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 9459081 - 9459276
Alignment:
Q  17 aaggtagatttctgagttgtccaattccttgtacaggcattccttttggagtttgaaatggcttaggaggcatttccaaggactcgacatctccttcaag 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9459081 aaggtagatttctgagttgtccaatgccttgtacaggcattccttttgcagtttgaaatggcttaggaggcatttccaaggactcaacatctcctacaag 9459180  T
Q  117 taactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagtatcttctcctc 212  Q
     ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||    
T  9459181 caactcaaccactttgttcatcgaaggacggtcaattggtttcatctatatacaccacaacgcaactattatcatcttcttcaatatcttctcctc 9459276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 9462908 - 9463103
Alignment:
Q  17 aaggtagatttctgagttgtccaattccttgtacaggcattccttttggagtttgaaatggcttaggaggcatttccaaggactcgacatctccttcaag 116  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9462908 aaggtagatttctgagttgtccaatgccttgtacaggcattccttttgcagtttgaaatggcttaggaggcatttccaaggactcaacatctcctacaag 9463007  T
Q  117 taactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagtatcttctcctc 212  Q
     ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||||||||||||||||||||| ||||||||||||    
T  9463008 caactcaaccactttgttcatcgaaggacggtcaattggtttcatctatatacaccacaacgcaactattatcatcttcttcaatatcttctcctc 9463103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 208 - 326
Target Start/End: Original strand, 9463841 - 9463959
Alignment:
Q  208 tcctcctcttctgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagggaaataaacttgactcttatgatcttcac 307  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9463841 tcctcctcctccgtaccattccccatttctatttccttcccttcgctaaattggtcgtaaacccaagaagtgaaataaacttgactcttatgatcttcac 9463940  T
Q  308 cctcattcatgttccttct 326  Q
     ||||||||||||||||||    
T  9463941 tctcattcatgttccttct 9463959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 9454155 - 9454061
Alignment:
Q  105 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    |||||||||||| | ||| || ||||| ||||| |||||||||||||| ||||||| |||||||||||||||| ||||||| | ||| |||||||    
T  9454155 atctccttcaagcatctctactacttttttcattgaaggacgatcaatgggtttcaactgtatacaccataatccaactatgaacattttcttca 9454061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 9318615 - 9318524
Alignment:
Q  108 tccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    ||||||||| | ||| | |||||||||||| ||||||||||||  ||||||||  ||||||||||||||||||| ||| | |||||||||||    
T  9318615 tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgcaattatgaacatcttcttca 9318524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 105 - 184
Target Start/End: Complemental strand, 9486520 - 9486441
Alignment:
Q  105 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaacta 184  Q
    |||||||||||| | ||| || ||||||||||| |||||||||||||| ||||||| |||||||||||| | ||||||||    
T  9486520 atctccttcaagcatctctactactttgttcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaacta 9486441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 9399415 - 9399505
Alignment:
Q  109 ccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    |||||||| | ||| || ||||||||||| |||||||||||||| ||||||| |||||||||||| | ||||||||| | ||| |||||||    
T  9399415 ccttcaagcatctctactactttgttcattgaaggacgatcaatgggtttcaactgtatacaccaaagtgcaactatgaacattttcttca 9399505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 105 - 185
Target Start/End: Complemental strand, 9433168 - 9433088
Alignment:
Q  105 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactat 185  Q
    |||||||||||| | ||| || ||||||||||| |||||||||||||  ||||||| |||||||||||| | |||||||||    
T  9433168 atctccttcaagcatctctactactttgttcattgaaggacgatcaacgggtttcaactgtatacaccaaagtgcaactat 9433088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 9319687 - 9319778
Alignment:
Q  108 tccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    ||||||||| | ||| | |||||||||||| ||||||||||||  ||||||||  ||||||||||||||||| | ||| | |||||||||||    
T  9319687 tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttca 9319778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 199
Target Start/End: Original strand, 9350004 - 9350095
Alignment:
Q  108 tccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    ||||||||| | ||| | |||||||||||| ||||||||||||  ||||||||  ||||||||||||||||| | ||| | |||||||||||    
T  9350004 tccttcaagcatctctatcactttgttcattgaaggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttca 9350095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 9143201 - 9143101
Alignment:
Q  103 acatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttcagta 202  Q
    ||||||||||| || | ||| || ||||||||||| || || ||||||  ||||||||  ||||||||||| | ||||||||| ||||||||||| ||||    
T  9143201 acatctccttcgagcatctccactactttgttcattgaggggcgatcagctggtttcaattgtatacaccaaagtgcaactatgatcatcttctttagta 9143102  T
Q  203 t 203  Q
    |    
T  9143101 t 9143101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 197
Target Start/End: Original strand, 8964292 - 8964386
Alignment:
Q  103 acatctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttctt 197  Q
    ||||||||||| || | ||| || || |||||||| || || ||||||| |||||||| |||||||||||| | ||| ||||| |||||||||||    
T  8964292 acatctccttcgagcatctccactaccttgttcattgaggggcgatcaactggtttcaactgtatacaccaaagtgcgactatgatcatcttctt 8964386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 9255356 - 9255262
Alignment:
Q  105 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    |||||||||||| | ||| | |||||| ||||| || |||||||||  ||||||||  ||||||||||||||||| | ||| | |||||||||||    
T  9255356 atctccttcaagcatctctatcactttattcattgagggacgatcacatggtttcaattgtatacaccataatgctattatgaacatcttcttca 9255262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 9234386 - 9234313
Alignment:
Q  109 ccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaac 182  Q
    |||||||| | |||||| ||||||||||| |||||||||||| | ||||||| ||| |||||||| | ||||||    
T  9234386 ccttcaagcatctcaactactttgttcattgaaggacgatcactcggtttcaactgaatacaccaaagtgcaac 9234313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 9384008 - 9384081
Alignment:
Q  109 ccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaac 182  Q
    |||||||| | |||||| ||||||||||| | |||||||||| | ||||||| ||| |||||||| ||||||||    
T  9384008 ccttcaagcatctcaactactttgttcattgtaggacgatcactcggtttcaactgaatacaccaaaatgcaac 9384081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 199
Target Start/End: Complemental strand, 9348855 - 9348783
Alignment:
Q  127 actttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    ||||| ||||| | |||||||||| ||||||| | |||||||||||||||||||| ||| | ||| |||||||    
T  9348855 actttattcattgcaggacgatcacttggttttaactgtatacaccataatgcaattatgaacattttcttca 9348783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 9082867 - 9082799
Alignment:
Q  105 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacacca 173  Q
    |||||||||||| | ||| || ||| |  ||||||||||||||||| |||||||||  |||||||||||    
T  9082867 atctccttcaagcatctccactactctactcatcgaaggacgatcatttggtttcaattgtatacacca 9082799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 9159396 - 9159468
Alignment:
Q  127 actttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgcaactattatcatcttcttca 199  Q
    ||||||||||| | |||||||||| ||||||| | |||||||||||||||||||| ||| | ||| |||||||    
T  9159396 actttgttcattgcaggacgatcacttggttttaactgtatacaccataatgcaattatgaacattttcttca 9159468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 15927524 - 15927449
Alignment:
Q  105 atctccttcaagtaactcaaccactttgttcatcgaaggacgatcaattggtttcatctgtatacaccataatgca 180  Q
    |||||||||||| | ||| | |||| ||||||| |||||||||||| ||||||| |  || |||||||||||||||    
T  15927524 atctccttcaagcatctctatcactctgttcattgaaggacgatcacttggttttaattgaatacaccataatgca 15927449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University