View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14196_high_31 (Length: 261)

Name: NF14196_high_31
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14196_high_31
NF14196_high_31
[»] chr4 (3 HSPs)
chr4 (68-261)||(53328711-53328904)
chr4 (80-249)||(22898562-22898731)
chr4 (80-249)||(22950230-22950399)
[»] chr5 (1 HSPs)
chr5 (68-258)||(26358540-26358730)
[»] chr7 (1 HSPs)
chr7 (66-258)||(39954835-39955027)
[»] chr2 (2 HSPs)
chr2 (83-249)||(41027581-41027747)
chr2 (77-175)||(30012096-30012194)
[»] chr3 (4 HSPs)
chr3 (69-255)||(21584590-21584776)
chr3 (92-255)||(31825573-31825736)
chr3 (92-255)||(25085041-25085204)
chr3 (69-255)||(24982049-24982235)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 53328904 - 53328711
Alignment:
Q  68 taaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtga 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  53328904 taacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtga 53328805  T
Q  168 ctgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtct 261  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53328804 cagcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtct 53328711  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 22898731 - 22898562
Alignment:
Q  80 ccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaa 179  Q
    |||||||| || |||||||| |||||||| || ||||| |||||||| |||||||| ||||| |  | ||| ||||| ||||| || || ||||| | ||    
T  22898731 ccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaa 22898632  T
Q  180 tcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcac 249  Q
    |||||||||| | ||| ||||| |  |||||||| || || ||||| || || |||||||||||||||||    
T  22898631 tcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcac 22898562  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 22950399 - 22950230
Alignment:
Q  80 ccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaa 179  Q
    |||||||| || |||||||| |||||||| || ||||| |||||||| |||||||| ||||| |  | ||| ||||| ||||| || || ||||| | ||    
T  22950399 ccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaa 22950300  T
Q  180 tcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcac 249  Q
    |||||||||| | ||| ||||| |  |||||||| || || ||||| || || |||||||||||||||||    
T  22950299 tcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcac 22950230  T

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Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 26358540 - 26358730
Alignment:
Q  68 taaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtga 167  Q
    ||||| || ||||| ||||| |||||||| ||||||||||| || |||||||||||||| |||||||| || || || |||||||| || ||||| ||||    
T  26358540 taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtga 26358639  T
Q  168 ctgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacg 258  Q
    | ||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |  ||||||||||| || |||||||||||    
T  26358640 cagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacg 26358730  T

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Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 258
Target Start/End: Original strand, 39954835 - 39955027
Alignment:
Q  66 tttaaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggt 165  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| || |  | ||||||||| ||||| ||    
T  39954835 tttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagt 39954934  T
Q  166 gactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacg 258  Q
     || |||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||| |  || ||||| | |||||||||||||||    
T  39954935 aacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacg 39955027  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 41027747 - 41027581
Alignment:
Q  83 taaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatca 182  Q
    |||||||||||||| || ||||| |  || |||||||||||||| |||||||||||||| |  | ||| ||||||||||| || || ||||||||||| |    
T  41027747 taaagagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataa 41027648  T
Q  183 cattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcac 249  Q
    ||||||| | ||||||||| |  |||||||| || ||||| ||||| || || || |||||||||||    
T  41027647 cattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcac 41027581  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 30012194 - 30012096
Alignment:
Q  77 aaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatca 175  Q
    ||||| ||||| |||||||| ||||||||||| || ||||| |||||||| ||||| || ||||| || ||||| || || ||||| || || ||||||    
T  30012194 aaaccataaagggtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatca 30012096  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 21584590 - 21584776
Alignment:
Q  69 aaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgac 168  Q
    |||| ||||| || ||||| || ||||| |||||||| | ||| |||||||||||||| ||||| |||||||| |  |  |||||||| ||||| || ||    
T  21584590 aacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaac 21584689  T
Q  169 tgcatcacgaatcacattct-caagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 255  Q
     ||||||||||||||||||| ||||||| ||||| ||||| || |  ||||| ||||| || || |||||||| | ||| ||||||||    
T  21584690 cgcatcacgaatcacattctccaagaaa-atcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacc 21584776  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 31825573 - 31825736
Alignment:
Q  92 cttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaa 191  Q
    |||||||||||||| | ||| || ||||||||||| || ||||| ||||| |  | ||| ||||| ||||| ||||| |||||||| || |||||||| |    
T  31825573 cttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctcca 31825672  T
Q  192 gaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 255  Q
      |||||||| |  || || | ||||||||||||||| || |||||||| | ||||||||||||    
T  31825673 agaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacc 31825736  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 255
Target Start/End: Complemental strand, 25085204 - 25085041
Alignment:
Q  92 cttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaa 191  Q
    |||||||| ||||| | ||| || ||||||||||| || || |||||||| |  |  || ||||| ||||| || ||||||||||| ||||||||||| |    
T  25085204 cttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctcca 25085105  T
Q  192 gaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 255  Q
      |||||||| |  || || |  ||||||||||| || || |||||||| | ||||||||||||    
T  25085104 agaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacc 25085041  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 255
Target Start/End: Complemental strand, 24982235 - 24982049
Alignment:
Q  69 aaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgac 168  Q
    |||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| |  | ||| ||||| ||||| || ||    
T  24982235 aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac 24982136  T
Q  169 tgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc 255  Q
    ||||||||| || |||||||| |  |||||||| |  || || |  ||||||||||| || || |||||||| | ||| ||||||||    
T  24982135 tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacc 24982049  T

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