View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_high_33 (Length: 237)
Name: NF14196_high_33
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_high_33 |
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| [»] scaffold0289 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 914483 - 914262
Alignment:
| Q |
1 |
catgcataaagattaaactatatctcttcttctctcattcttctgtgtatgcgcatgttttagcaaaaatagaagctaataactcaacttccggtagatg |
100 |
Q |
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| T |
914483 |
catgcataaagattaaactatatctcttcttctctcattcttctgtgtatgcgcatgttttagcaaaaatagaagctaataactcaacttccggtagatg |
914384 |
T |
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| Q |
101 |
ttcaaatatctaaaaagaacgagtcgctatattagtcattctgagagaagaatctagataa-nnnnnnnnattgtaatgaaccactctattatatctatt |
199 |
Q |
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| T |
914383 |
ttcaaatatctaaaaagaacgagtcgctatattagtcattctgagagaagaatctagataatttttttttattgtaatgagccactctattatatctatt |
914284 |
T |
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| Q |
200 |
ttattgcaatgagccacgttat |
221 |
Q |
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|||||||||||||||||||||| |
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| T |
914283 |
ttattgcaatgagccacgttat |
914262 |
T |
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Target: scaffold0289 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 21938 - 21865
Alignment:
| Q |
88 |
cttccggtagatgttcaaatatctaaaaagaacgagtcgctatattagtcattctgagagaagaatctagataa |
161 |
Q |
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| T |
21938 |
cttccggtagattttcatatatctaaaaggggtgagtcgctaacttagtcattctgagagaagaatctagataa |
21865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 14287963 - 14287890
Alignment:
| Q |
88 |
cttccggtagatgttcaaatatctaaaaagaacgagtcgctatattagtcattctgagagaagaatctagataa |
161 |
Q |
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| T |
14287963 |
cttccggtagattttcagatatccaaaagggatgagtcgctaacttagtcattctaagagaagaatctagataa |
14287890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 161
Target Start/End: Complemental strand, 9270554 - 9270481
Alignment:
| Q |
88 |
cttccggtagatgttcaaatatctaaaaagaacgagtcgctatattagtcattctgagagaagaatctagataa |
161 |
Q |
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| T |
9270554 |
cttccggtagattttcatatatccaaaaggagtgagtcgctaacttaggcattttgagagaagaatctagataa |
9270481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 160
Target Start/End: Complemental strand, 6440650 - 6440578
Alignment:
| Q |
88 |
cttccggtagatgttcaaatatctaaaaagaacgagtcgctatattagtcattctgagagaagaatctagata |
160 |
Q |
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| T |
6440650 |
cttccggtagattttcatatatccaaaaggggtgagtcgctaacttagccattctgagagaagaatctagata |
6440578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 46514708 - 46514748
Alignment:
| Q |
121 |
gagtcgctatattagtcattctgagagaagaatctagataa |
161 |
Q |
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| T |
46514708 |
gagtcgctaacttagtcattctgagagaagaatctagataa |
46514748 |
T |
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