View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14196_low_1 (Length: 820)

Name: NF14196_low_1
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14196_low_1
NF14196_low_1
[»] scaffold0455 (6 HSPs)
scaffold0455 (18-803)||(11950-12735)
scaffold0455 (686-800)||(13165-13280)
scaffold0455 (686-800)||(12800-12915)
scaffold0455 (723-800)||(13021-13098)
scaffold0455 (686-782)||(13348-13445)
scaffold0455 (686-782)||(13708-13805)
[»] chr6 (11 HSPs)
chr6 (18-803)||(28133914-28134699)
chr6 (686-800)||(28135129-28135244)
chr6 (686-800)||(12943913-12944029)
chr6 (686-800)||(28134764-28134879)
chr6 (723-800)||(28134985-28135062)
chr6 (25-100)||(28220891-28220968)
chr6 (686-782)||(28135312-28135409)
chr6 (686-782)||(28135672-28135769)
chr6 (686-782)||(28136032-28136129)
chr6 (117-169)||(28220968-28221020)
chr6 (720-781)||(12943565-12943626)
[»] chr2 (2 HSPs)
chr2 (686-800)||(14100217-14100332)
chr2 (720-781)||(14099869-14099930)
[»] chr7 (4 HSPs)
chr7 (686-800)||(29831947-29832062)
chr7 (686-800)||(29261292-29261407)
chr7 (713-781)||(29832158-29832226)
chr7 (720-781)||(29832349-29832410)
[»] chr5 (7 HSPs)
chr5 (686-800)||(30626943-30627059)
chr5 (161-264)||(9816710-9816813)
chr5 (713-781)||(1833946-1834014)
chr5 (713-781)||(40319412-40319480)
chr5 (713-781)||(41408065-41408133)
chr5 (720-781)||(30626595-30626656)
chr5 (407-447)||(6381575-6381615)
[»] chr4 (4 HSPs)
chr4 (686-800)||(4920911-4921026)
chr4 (713-781)||(4920747-4920815)
chr4 (723-781)||(27294543-27294601)
chr4 (713-783)||(33074444-33074514)
[»] scaffold0038 (2 HSPs)
scaffold0038 (25-100)||(21389-21466)
scaffold0038 (117-169)||(21466-21518)
[»] chr3 (10 HSPs)
chr3 (686-800)||(50648650-50648762)
chr3 (720-781)||(50649049-50649110)
chr3 (714-781)||(15050436-15050503)
chr3 (161-203)||(19990890-19990932)
chr3 (731-789)||(36983457-36983515)
chr3 (713-783)||(36983623-36983693)
chr3 (731-789)||(37008896-37008954)
chr3 (713-783)||(37009062-37009132)
chr3 (451-497)||(37375443-37375489)
chr3 (451-497)||(38575086-38575132)
[»] chr1 (4 HSPs)
chr1 (499-591)||(29148780-29148873)
chr1 (686-753)||(27288189-27288257)
chr1 (723-781)||(52384404-52384462)
chr1 (720-781)||(27287850-27287911)
[»] scaffold0175 (1 HSPs)
scaffold0175 (406-447)||(26262-26303)


Alignment Details
Target: scaffold0455 (Bit Score: 762; Significance: 0; HSPs: 6)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 18 - 803
Target Start/End: Original strand, 11950 - 12735
Alignment:
Q  18 gtaaggatgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttttatataaaagggatgaagaagcaaggatgtctcttcatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11950 gtaaggatgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttttatataaaatggatgaagaagcaaggatgtctcttcatc 12049  T
Q  118 caataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttttattatctgctatgcttttcttatttatctttagcagtattgatatga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  12050 caataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttttattatctgctatgcttttcttatttatctttagtagtattgatatga 12149  T
Q  218 ctaactcatgtttcactatgctcttacacacacatatactatagagaacaagaagtctggtcagaatacacttgtgcataaacccttgtgtgcgtgtaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12150 ctaactcatgtttcactatgctcttacacacacatatactatagagaacaagaagtctggtcagaatacacttgtgcataaacccttgtgtgcgtgtaaa 12249  T
Q  318 attcaagaaaatcaaaggttattgtatttaataaacatgtgcaaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttc 417  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12250 attcaagaaaatcaaagtttattgtatttaataaacatgtgcaaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttc 12349  T
Q  418 acatgggaaagtataaaatttttccaccatttaattaaatgaagaacacctacttaacatgttctctcaacactggatttattttccacaccaccaacta 517  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12350 acatgggaaagtataaaatttttccaccatttgattaaatgaagaacacctacttaacatgttctctcaacactggatttattttccacaccaccaacta 12449  T
Q  518 ttctccctcctccatgtctctctcaccaccaccacaaccagcaactttcctttcaacaaattgatttgtgaagctactcacactacttctggtattcagt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12450 ttctccctcctccatgtctctctcaccaccaccacaaccagcaactttcctttcaacaaattgatttgtgaagctactcacactacttctggtattcagt 12549  T
Q  618 tcaaatagaacaagaccaaatggaagtgaaaaacataaaaagagagagacatgcactactagaaattctcgacttacctatcagattttgatctgaaaat 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12550 tcaaatagaacaagaccaaatggaagtgaaaaacataaaaagagagagacatgcactactagaaattctcgacttacctatcagattctgatctgaaaat 12649  T
Q  718 ttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtttgtcacctagattc 803  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12650 tccagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtttgtcacctagattc 12735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 686 - 800
Target Start/End: Original strand, 13165 - 13280
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaattt-cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    |||||||||||| ||||||  |||||||||| || |||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||    
T  13165 tcgacttacctaccagattccgatctgaaaaattacagttcctacttccttcttactctattaagttcatattcaacggtctgattgattatatttgttt 13264  T
Q  785 ccgtttgtcacctaga 800  Q
    |||||||| |||||||    
T  13265 ccgtttgtgacctaga 13280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 686 - 800
Target Start/End: Original strand, 12800 - 12915
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    ||||||| || || ||||| ||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||   || ||||||||||||||||||    
T  12800 tcgactttccaattagattctgatctgaaaaattcaagttcctacttcctttttactatattaaggtcatattcaacgttcagattgattatatttgttt 12899  T
Q  785 ccgtttgtcacctaga 800  Q
    |||||||| |||||||    
T  12900 ccgtttgtaacctaga 12915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 723 - 800
Target Start/End: Original strand, 13021 - 13098
Alignment:
Q  723 ttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtttgtcacctaga 800  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||| |||||||    
T  13021 ttcctacttccttcttactctattaagatcatattaaatagtctgattgattatatttgtttccatttgtgacctaga 13098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 782
Target Start/End: Original strand, 13348 - 13445
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgt 782  Q
    |||||||||| |||| |||  |||||||||| |||| |||||||||||||  ||||| |||||| |||||||||||  | | ||||||||||||||||    
T  13348 tcgacttaccaatcaaattccgatctgaaaaattcaagttcctacttcctaattactatattaaagtcatattcaacggcctgattgattatatttgt 13445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 782
Target Start/End: Original strand, 13708 - 13805
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgt 782  Q
    |||||||||| |||| |||  |||||||||| |||| |||||||||||||  ||||| |||||| |||||||||||  | | ||||||||||||||||    
T  13708 tcgacttaccaatcaaattccgatctgaaaaattcaagttcctacttcctaattactatattaaagtcatattcaacggcctgattgattatatttgt 13805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 762; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 18 - 803
Target Start/End: Original strand, 28133914 - 28134699
Alignment:
Q  18 gtaaggatgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttttatataaaagggatgaagaagcaaggatgtctcttcatc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28133914 gtaaggatgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttttatataaaatggatgaagaagcaaggatgtctcttcatc 28134013  T
Q  118 caataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttttattatctgctatgcttttcttatttatctttagcagtattgatatga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28134014 caataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttttattatctgctatgcttttcttatttatctttagtagtattgatatga 28134113  T
Q  218 ctaactcatgtttcactatgctcttacacacacatatactatagagaacaagaagtctggtcagaatacacttgtgcataaacccttgtgtgcgtgtaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134114 ctaactcatgtttcactatgctcttacacacacatatactatagagaacaagaagtctggtcagaatacacttgtgcataaacccttgtgtgcgtgtaaa 28134213  T
Q  318 attcaagaaaatcaaaggttattgtatttaataaacatgtgcaaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttc 417  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134214 attcaagaaaatcaaagtttattgtatttaataaacatgtgcaaaaactcaccggtcttatcaataaaaataatgtaacccacttttggggtggcatttc 28134313  T
Q  418 acatgggaaagtataaaatttttccaccatttaattaaatgaagaacacctacttaacatgttctctcaacactggatttattttccacaccaccaacta 517  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134314 acatgggaaagtataaaatttttccaccatttgattaaatgaagaacacctacttaacatgttctctcaacactggatttattttccacaccaccaacta 28134413  T
Q  518 ttctccctcctccatgtctctctcaccaccaccacaaccagcaactttcctttcaacaaattgatttgtgaagctactcacactacttctggtattcagt 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134414 ttctccctcctccatgtctctctcaccaccaccacaaccagcaactttcctttcaacaaattgatttgtgaagctactcacactacttctggtattcagt 28134513  T
Q  618 tcaaatagaacaagaccaaatggaagtgaaaaacataaaaagagagagacatgcactactagaaattctcgacttacctatcagattttgatctgaaaat 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28134514 tcaaatagaacaagaccaaatggaagtgaaaaacataaaaagagagagacatgcactactagaaattctcgacttacctatcagattctgatctgaaaat 28134613  T
Q  718 ttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtttgtcacctagattc 803  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28134614 tccagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtttgtcacctagattc 28134699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 686 - 800
Target Start/End: Original strand, 28135129 - 28135244
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaattt-cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    |||||||||||| ||||||  |||||||||| || |||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||    
T  28135129 tcgacttacctaccagattccgatctgaaaaattacagttcctacttccttcttactctattaagttcatattcaacggtctgattgattatatttgttt 28135228  T
Q  785 ccgtttgtcacctaga 800  Q
    |||||||| |||||||    
T  28135229 ccgtttgtgacctaga 28135244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 686 - 800
Target Start/End: Complemental strand, 12944029 - 12943913
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttcag-ttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg-tt 783  Q
    |||||||||| || ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||| ||    
T  12944029 tcgacttaccaattagattttgatctgaaaatttcaaattcctacttccttcttactctattaaggtcatattcaaatgtttgattgattatatttgttt 12943930  T
Q  784 tccgtttgtcacctaga 800  Q
    | ||||||| |||||||    
T  12943929 ttcgtttgtgacctaga 12943913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 686 - 800
Target Start/End: Original strand, 28134764 - 28134879
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    ||||||| || || ||||| ||||||||||| |||| |||||||||||||| ||||| ||||||||||||||||||   || ||||||||||||||||||    
T  28134764 tcgactttccaattagattctgatctgaaaaattcaagttcctacttcctttttactatattaaggtcatattcaacgttcagattgattatatttgttt 28134863  T
Q  785 ccgtttgtcacctaga 800  Q
    |||||||| |||||||    
T  28134864 ccgtttgtaacctaga 28134879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 723 - 800
Target Start/End: Original strand, 28134985 - 28135062
Alignment:
Q  723 ttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtttgtcacctaga 800  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||||| |||||||    
T  28134985 ttcctacttccttcttactctattaagatcatattaaatagtctgattgattatatttgtttccatttgtgacctaga 28135062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 28220891 - 28220968
Alignment:
Q  25 tgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttt--tatataaaagggatgaagaagc 100  Q
    |||| |||||||||  ||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||    
T  28220891 tgtctagtgacagattgaagctaatctgagaatcaaggtgaaagcaaacacttttatatataaaagggatgaagaagc 28220968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 782
Target Start/End: Original strand, 28135312 - 28135409
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgt 782  Q
    |||||||||| |||| |||  |||||||||| |||| |||||||||||||  ||||| |||||| |||||||||||  | | ||||||||||||||||    
T  28135312 tcgacttaccaatcaaattccgatctgaaaaattcaagttcctacttcctaattactatattaaagtcatattcaacggcctgattgattatatttgt 28135409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 782
Target Start/End: Original strand, 28135672 - 28135769
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgt 782  Q
    |||||||||| |||| |||  |||||||||| |||| |||||||||||||  ||||| |||||| |||||||||||  | | ||||||||||||||||    
T  28135672 tcgacttaccaatcaaattccgatctgaaaaattcaagttcctacttcctaattactatattaaagtcatattcaacggcctgattgattatatttgt 28135769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 686 - 782
Target Start/End: Original strand, 28136032 - 28136129
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgt 782  Q
    |||||||||| |||| |||  |||||||||| |||| |||||||||||||  ||||| |||||| |||||||||||  | | ||||||||||||||||    
T  28136032 tcgacttaccaatcaaattccgatctgaaaaattcaagttcctacttcctaattactatattaaagtcatattcaacggcctgattgattatatttgt 28136129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 28220968 - 28221020
Alignment:
Q  117 ccaataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttt 169  Q
    |||||||||||||| | |||||||||||||||||||||| || ||||||||||    
T  28220968 ccaataatgaaattgttgtggtttggttaaaagatcaatgcaggtaatgtttt 28221020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 720 - 781
Target Start/End: Complemental strand, 12943626 - 12943565
Alignment:
Q  720 cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||| |||||| |||| |||||||||| ||||  ||| |||||||||||||||    
T  12943626 cagttcctacttcgttcttattctaataaggtcatactcaacggtctgattgattatatttg 12943565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 686 - 800
Target Start/End: Complemental strand, 14100332 - 14100217
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    |||||||||| || ||||||  |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  14100332 tcgacttaccaattagatttcaatctgaaaatttcaagttcctacttccttcttactctattaaggtcatattcaaaggtctgattgattatatttgttt 14100233  T
Q  785 ccgtttgtcacctaga 800  Q
    |||||||| |||||||    
T  14100232 ccgtttgtgacctaga 14100217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 781
Target Start/End: Complemental strand, 14099930 - 14099869
Alignment:
Q  720 cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||| |||||| |||| |||||||||| ||||   || |||||||||||||||    
T  14099930 cagttcctacttcgttcttattctaataaggtcatactcaacgatctgattgattatatttg 14099869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 686 - 800
Target Start/End: Original strand, 29831947 - 29832062
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    |||||||||| |||||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||||||    
T  29831947 tcgacttaccaatcagatttcaatctgaaaaattcaagttcctacttccttcttactctattaaggtcatattcaaaggtctcattgattatatttgttt 29832046  T
Q  785 ccgtttgtcacctaga 800  Q
    |||||||| |||||||    
T  29832047 ccgtttgtgacctaga 29832062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 686 - 800
Target Start/End: Complemental strand, 29261407 - 29261292
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaa-tttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    ||||||| || ||||||||  |||||||||| |||||||||||||||||||  |||| ||||||||| ||| ||||  ||| ||| ||||||||||||||    
T  29261407 tcgacttgccaatcagattccgatctgaaaaatttcagttcctacttcctttctactttattaaggttataatcaacggtcagatagattatatttgttt 29261308  T
Q  785 ccgtttgtcacctaga 800  Q
    |||||||| |||||||    
T  29261307 ccgtttgtgacctaga 29261292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 781
Target Start/End: Original strand, 29832158 - 29832226
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||| | |||| |||||| |  | |||||||||||||||| ||| |||||||||||||||    
T  29832158 aaaatttcagttcgtccttcgttcttatttcaataaggtcatattcaatggtctgattgattatatttg 29832226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 781
Target Start/End: Original strand, 29832349 - 29832410
Alignment:
Q  720 cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||  |||||| |||| |||||||||| ||||| ||| |||| ||||||||||    
T  29832349 cagttcctacttagttcttattctaataaggtcatactcaatggtctgattaattatatttg 29832410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 9e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 686 - 800
Target Start/End: Complemental strand, 30627059 - 30626943
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttcag-ttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg-tt 783  Q
    |||||||||| || |||||| |||||| ||||||||  ||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| ||    
T  30627059 tcgacttaccaattagatttcgatctgcaaatttcaaattcctacttccttcttactctattaaggtcatattcaaatgtctgattgattatatttgttt 30626960  T
Q  784 tccgtttgtcacctaga 800  Q
    | ||||||| |||||||    
T  30626959 ttcgtttgtgacctaga 30626943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 9816710 - 9816813
Alignment:
Q  161 taatgtttttattatctgctatgcttttcttatttatctttagcagtattgatatgactaactcatgtttcactatgctcttacacacacatatactata 260  Q
    ||||||||||||||||| ||||||||  ||||||||||||||| | |||||  ||||||||||||||||| |||||||| |||||  ||||||||||||     
T  9816710 taatgtttttattatcttctatgcttgccttatttatctttagtaatattggcatgactaactcatgttttactatgcttttacatgcacatatactatt 9816809  T
Q  261 gaga 264  Q
    ||||    
T  9816810 gaga 9816813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 781
Target Start/End: Complemental strand, 1834014 - 1833946
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||||||| |  |||||| || | |||||||||||||||| ||| |||||||||||||||    
T  1834014 aaaatttcagttcctaccttgttcttattccaataaggtcatattcaatggtccgattgattatatttg 1833946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 781
Target Start/End: Complemental strand, 40319480 - 40319412
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||||||| |  |||||| || | |||||||||||||||| ||| |||||||||||||||    
T  40319480 aaaatttcagttcctaccttgttcttattccaataaggtcatattcaatggtccgattgattatatttg 40319412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 781
Target Start/End: Original strand, 41408065 - 41408133
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||||||| |  |||||| || | |||||||||||||||| ||| |||||||||||||||    
T  41408065 aaaatttcagttcctaccttgttcttattccaataaggtcatattcaatggtccgattgattatatttg 41408133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 720 - 781
Target Start/End: Complemental strand, 30626656 - 30626595
Alignment:
Q  720 cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||| |||||| |||| |||||||||| ||||  ||| |||||||||||||||    
T  30626656 cagttcctacttcgttcttattctaataaggtcatactcaacggtctgattgattatatttg 30626595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 6381615 - 6381575
Alignment:
Q  407 ggtggcatttcacatgggaaagtataaaatttttccaccat 447  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  6381615 ggtggcatttcacatgggaaaggataaaacttttccaccat 6381575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 686 - 800
Target Start/End: Complemental strand, 4921026 - 4920911
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    |||||||||| || ||||||  |||| ||||||||| |||||||||||||||||||||||||||||||||||| ||  ||  ||||||||||||||||||    
T  4921026 tcgacttaccaattagatttcaatctaaaaatttcaagttcctacttccttcttactctattaaggtcatatttaaaggtatgattgattatatttgttt 4920927  T
Q  785 ccgtttgtcacctaga 800  Q
     ||||||| |||||||    
T  4920926 tcgtttgtgacctaga 4920911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 781
Target Start/End: Complemental strand, 4920815 - 4920747
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||| | |||| |||||| |||| |||||||||| ||||  ||| |||||||||||||||    
T  4920815 aaaatttcagttcgtgcttcgttcttattctaataaggtcatactcaacggtctgattgattatatttg 4920747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 723 - 781
Target Start/End: Complemental strand, 27294601 - 27294543
Alignment:
Q  723 ttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    |||||||||| |||||| |||| |||||||||| ||||  ||| |||||||||||||||    
T  27294601 ttcctacttcgttcttattctaataaggtcatactcaacggtctgattgattatatttg 27294543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 783
Target Start/End: Complemental strand, 33074514 - 33074444
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtt 783  Q
    |||||| |||||| ||  ||||||||| ||||||||||||||||||||  ||| ||| |||| ||||||||    
T  33074514 aaaattccagttcttatctccttcttagtctattaaggtcatattcaacggtctgatagattgtatttgtt 33074444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 21389 - 21466
Alignment:
Q  25 tgtcgagtgacagagggaagctaatctgagactcaaggtgaaagcaagcacttt--tatataaaagggatgaagaagc 100  Q
    |||| |||||||||  ||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||    
T  21389 tgtctagtgacagattgaagctaatctgagaatcaaggtgaaagcaaacacttttatatataaaagggatgaagaagc 21466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 21466 - 21518
Alignment:
Q  117 ccaataatgaaattttcgtggtttggttaaaagatcaatacatgtaatgtttt 169  Q
    |||||||||||||| | |||||||||||||||||||||| || ||||||||||    
T  21466 ccaataatgaaattgttgtggtttggttaaaagatcaatgcaggtaatgtttt 21518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 8e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 686 - 800
Target Start/End: Original strand, 50648650 - 50648762
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgttt 784  Q
    |||||||||| | || ||||  ||||||||| |||| |||||||||||| ||||||||||||||||||||||||||  ||   |||||||||||||||||    
T  50648650 tcgacttaccaaacatatttcaatctgaaaaattcaagttcctacttccatcttactctattaaggtcatattcaaatgt---attgattatatttgttt 50648746  T
Q  785 ccgtttgtcacctaga 800  Q
      |||||| |||||||    
T  50648747 atgtttgtgacctaga 50648762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 720 - 781
Target Start/End: Original strand, 50649049 - 50649110
Alignment:
Q  720 cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||| |||||| |||| |||||||||| ||||  ||| |||||||||||||||    
T  50649049 cagttcctacttcgttcttattctaataaggtcatactcaacggtctgattgattatatttg 50649110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 714 - 781
Target Start/End: Complemental strand, 15050503 - 15050436
Alignment:
Q  714 aaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||| ||||| || |||| |||||| |||| |||||||||||||||  ||| |||||||||||||||    
T  15050503 aaattccagttactgcttcgttcttattctaataaggtcatattcaacggtccgattgattatatttg 15050436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 203
Target Start/End: Original strand, 19990890 - 19990932
Alignment:
Q  161 taatgtttttattatctgctatgcttttcttatttatctttag 203  Q
    ||||||||||||||||| |||||||| | ||||||||||||||    
T  19990890 taatgtttttattatctcctatgcttgtgttatttatctttag 19990932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 36983457 - 36983515
Alignment:
Q  731 tccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtt 789  Q
    ||||||||| ||||||||||||||||||||  ||| ||| |||| |||||||| |||||    
T  36983457 tccttcttagtctattaaggtcatattcaacggtctgatagattgtatttgttgccgtt 36983515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 783
Target Start/End: Original strand, 36983623 - 36983693
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtt 783  Q
    |||||| |||||||||  |||| |||| ||||||||||||||||||||  ||| ||| |||| ||||||||    
T  36983623 aaaattccagttcctatctcctgcttagtctattaaggtcatattcaacggtctgatagattgtatttgtt 36983693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 731 - 789
Target Start/End: Original strand, 37008896 - 37008954
Alignment:
Q  731 tccttcttactctattaaggtcatattcaatagtcggattgattatatttgtttccgtt 789  Q
    ||||||||| ||||||||||||||||||||  ||| ||| |||| |||||||| |||||    
T  37008896 tccttcttagtctattaaggtcatattcaacggtctgatagattgtatttgttgccgtt 37008954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 713 - 783
Target Start/End: Original strand, 37009062 - 37009132
Alignment:
Q  713 aaaatttcagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttgtt 783  Q
    |||||| |||||||||  |||| |||| ||||||||||||||||||||  ||| ||| |||| ||||||||    
T  37009062 aaaattccagttcctatctcctgcttagtctattaaggtcatattcaacggtctgatagattgtatttgtt 37009132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 497
Target Start/End: Complemental strand, 37375489 - 37375443
Alignment:
Q  451 attaaatgaagaacacctacttaacatgttctctcaacactggattt 497  Q
    ||||| ||||||||| || |||||||||||||||||||||| |||||    
T  37375489 attaagtgaagaacatcttcttaacatgttctctcaacactagattt 37375443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 451 - 497
Target Start/End: Original strand, 38575086 - 38575132
Alignment:
Q  451 attaaatgaagaacacctacttaacatgttctctcaacactggattt 497  Q
    |||||||||||||||  | |||||||||||||||||||||| |||||    
T  38575086 attaaatgaagaacatattcttaacatgttctctcaacactagattt 38575132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 499 - 591
Target Start/End: Complemental strand, 29148873 - 29148780
Alignment:
Q  499 ttttccacaccaccaactattctccctcctccatgtctctctca-ccaccaccacaaccagcaactttcctttcaacaaattgatttgtgaagc 591  Q
    ||||||||||||||  | |||||| ||||||||||||||||||| |||||||||| ||| |||||| |||| || ||||||  |||||||||||    
T  29148873 ttttccacaccacctgccattctctctcctccatgtctctctcacccaccaccactaccggcaactctcctgtcgacaaatccatttgtgaagc 29148780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 686 - 753
Target Start/End: Complemental strand, 27288257 - 27288189
Alignment:
Q  686 tcgacttacctatcagattttgatctgaaaatttca-gttcctacttccttcttactctattaaggtca 753  Q
    |||||||||| |||| |||  |||||||||| |||| |||||||||||||||||||||| |||||||||    
T  27288257 tcgacttaccaatcaaattccgatctgaaaaattcaagttcctacttccttcttactcttttaaggtca 27288189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 723 - 781
Target Start/End: Original strand, 52384404 - 52384462
Alignment:
Q  723 ttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    |||||||||| |||||| |||| |||||||||| ||||  ||| |||||||||||||||    
T  52384404 ttcctacttcgttcttattctaataaggtcatactcaacggtctgattgattatatttg 52384462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 720 - 781
Target Start/End: Complemental strand, 27287911 - 27287850
Alignment:
Q  720 cagttcctacttccttcttactctattaaggtcatattcaatagtcggattgattatatttg 781  Q
    ||||||||||||| |||||| |||| |||||||||| ||||   || |||||||||||||||    
T  27287911 cagttcctacttcgttcttattctaataaggtcatactcaacgatctgattgattatatttg 27287850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 26262 - 26303
Alignment:
Q  406 gggtggcatttcacatgggaaagtataaaatttttccaccat 447  Q
    ||||||||||| |||||||||||| ||||| |||||||||||    
T  26262 gggtggcatttaacatgggaaagtgtaaaacttttccaccat 26303  T

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