View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14196_low_14 (Length: 409)
Name: NF14196_low_14
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 55505724 - 55506105
Alignment:
| Q |
1 |
tgtttggagacaaaactacatgttctactgtacttggattcatcatttctagtgcaagggttttaaaatcatgtcttactctctttgaatgttacaatgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55505724 |
tgtttggagacaaaactacatgttctagtgtacttggattcatcatttctagtgcaagggttttaaaatcatgtcttactctctttgaatgttacaatgt |
55505823 |
T |
|
| Q |
101 |
cttgttgctaaagaaaatgggaggatccaagttttctccgttccatctttgatctttcttgtagagaataatagagagtgaaaatagattaattacttat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
55505824 |
cttgttgctaaagaaaatgggaggatccaagttttctccgttccatctttgatctttcttgtagagagtaa----------aaatagattaattacttat |
55505913 |
T |
|
| Q |
201 |
atacattctttgggctattagtctagttctatcattaattttggttgacaatgtcatgcaagctgtatgtaaatcaatgtaactattttaatcaatttga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
55505914 |
atacattctttgggctattagtctagttctatcattaattttggttgacaatgtcatgcaagctgtatgtaaatcaatgtaactattttaaccaatttga |
55506013 |
T |
|
| Q |
301 |
ctataataagttagttgaatttgatggggagagcactgatagaaacactttaggttctgtttctaagaggaggacggaagagtgatagaaag |
392 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55506014 |
ctataataagttagttgaatttgatggggagagcactgatagaaacactttaggttctgtttctaagaggaggacggaagagtgatagaaag |
55506105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 155 - 362
Target Start/End: Original strand, 49086918 - 49087128
Alignment:
| Q |
155 |
tttcttgtagagaataatagagagtgaaaatagattaatta---cttatatacattctttgggctattagtctagttctatcattaattttggttgacaa |
251 |
Q |
| |
|
|||||||||||||||||||||| | || ||| ||||||| |||||||| ||||||| | ||||||||||||| | |||||||| |||| || ||| |
|
|
| T |
49086918 |
tttcttgtagagaataatagaggg--aacatatcttaattatatcttatataaattctttagaatattagtctagttttgtcattaatgttggctggcaa |
49087015 |
T |
|
| Q |
252 |
tgtcatgca--agctgtatgtaaatcaatgtaactattttaatcaatttgactataataagttagttgaatttgatggggagagcactgatagaaacact |
349 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||| ||||||| |||| ||| |||| ||||| ||| || |||||| ||||||||||||||||||| | |
|
|
| T |
49087016 |
tgtcatgcataagctgcatgtaaaacaatgtaattattttagccaatcagacattaatcagttacttgtatatgatggagagagcactgatagaaacatt |
49087115 |
T |
|
| Q |
350 |
ttaggttctgttt |
362 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
49087116 |
ttagtttctgttt |
49087128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 7e-62; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 217 - 392
Target Start/End: Complemental strand, 43633878 - 43633702
Alignment:
| Q |
217 |
attagtctagttctatcattaattttggttgacaatgtcatgcaagctgtatgtaaatcaatgtaactattttaatcaatttgactataataagttagtt |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||| |||||||||||| || |
|
|
| T |
43633878 |
attagtatagttctatcattaattttggttgacaatgtcatgcaagctgtatgtaaatcaatgtgaataatttagccaatttgattataataagttactt |
43633779 |
T |
|
| Q |
317 |
gaatttgat-ggggagagcactgatagaaacactttaggttctgtttctaagaggaggacggaagagtgatagaaag |
392 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43633778 |
aaatttcatgggggagagcactgatagaaacactttaggttatgtttctaagagggggacggaagagtgatagaaag |
43633702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 217 - 392
Target Start/End: Original strand, 43996049 - 43996225
Alignment:
| Q |
217 |
attagtctagttctatcattaattttggttgacaatgtcatgcaagctgtatgtaaatcaatgtaactattttaatcaatttgactataataagttagtt |
316 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||| |||||||||||| || |
|
|
| T |
43996049 |
attagtatagttctatcattaattttggttgacaatgtcatgcaagctgtatgtaaatcaatgtgaataatttagccaatttgattataataagttactt |
43996148 |
T |
|
| Q |
317 |
gaatttgat-ggggagagcactgatagaaacactttaggttctgtttctaagaggaggacggaagagtgatagaaag |
392 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43996149 |
aaatttcatgggggagagcactgatagaaacactttaggttatgtttctaagagggggacggaagagtgatagaaag |
43996225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43633939 - 43633890
Alignment:
| Q |
1 |
tgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43633939 |
tgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
43633890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43995988 - 43996037
Alignment:
| Q |
1 |
tgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43995988 |
tgtttggagacaaaactacatgttctactgtacttggattcatcatttct |
43996037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University