View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14196_low_17 (Length: 393)
Name: NF14196_low_17
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_17 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 42383667 - 42383926
Alignment:
| Q |
1 |
ccatgaagaaaatgacccaaaatctgattgaaaaaacttt-atgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagtaataaca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383667 |
ccatgaagaaaatgacccaaaatctgattgaaaaaacttttatgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagtaataaca |
42383766 |
T |
|
| Q |
100 |
acttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgacacaacatc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383767 |
acttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgacacaacatc |
42383866 |
T |
|
| Q |
200 |
gctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42383867 |
gctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
42383926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 298 - 360
Target Start/End: Original strand, 42387000 - 42387062
Alignment:
| Q |
298 |
aacaaacaaacgaagcaatcttatgtggattcagatcagaaaattgatacctgctccaatcga |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42387000 |
aacaaacaaacgaagcaatcttatgtggattcagatcagaaaattgatacctgctccaatcga |
42387062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 1748760 - 1749019
Alignment:
| Q |
1 |
ccatgaagaaaatgacccaaaatctgattgaaaaaacttt-atgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagtaataaca |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1748760 |
ccatgaagaaaatgacccaaaatctgattgaaaaaacttttatgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagtaataaca |
1748859 |
T |
|
| Q |
100 |
acttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgacacaacatc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1748860 |
acttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaagcaagaacgacacaacatc |
1748959 |
T |
|
| Q |
200 |
gctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1748960 |
gctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactca |
1749019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 82 - 258
Target Start/End: Complemental strand, 20686368 - 20686192
Alignment:
| Q |
82 |
acaatagcagtaataacaacttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagggaaaaagcaaag |
181 |
Q |
| |
|
||||| ||||||| |||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
20686368 |
acaatggcagtaacaacaacttatggctcctttatgatttgacgcaggtttcctggcaaatttggaaaaaatcatgatatagaatattgaaaaagcaaag |
20686269 |
T |
|
| Q |
182 |
caagaacgacacaacatcgctatttcaaattataatcttcaactaatagcgaaaagaaatagcaaaagcagccactc |
258 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |
|
|
| T |
20686268 |
caggaacgacacaacatcaatatttcaaattataatcttcaaataatagcgaaaataaataacaaaagcagccactc |
20686192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 20686533 - 20686385
Alignment:
| Q |
1 |
ccatgaagaaaatgacccaaaatctgattgaaaaaactttatgttatgactcccatttagagcagcagtagcaaaccaacaacaatagcagtaataacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||| | | ||||| ||||||| ||||| |
|
|
| T |
20686533 |
ccatgaagaaaatgacccaaaatctgattgaaaaaactttacgttatgactcccatttagagaagcagtaacaaagaagcgacaatggcagtaacaacaa |
20686434 |
T |
|
| Q |
101 |
cttatggttcctttatgatttgatgtaggtttcctagcaaatttggaaa |
149 |
Q |
| |
|
||||||| ||||||| ||||||| | ||||||||| ||||||||||||| |
|
|
| T |
20686433 |
cttatggctcctttacgatttgacgcaggtttcctggcaaatttggaaa |
20686385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 84872 - 84932
Alignment:
| Q |
109 |
tcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
84872 |
tcctttatgatttgatgtaggtttcctagcaaatttggaaaaaatcataatatagaatagg |
84932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University