View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_19 (Length: 369)
Name: NF14196_low_19
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 24 - 361
Target Start/End: Complemental strand, 39308127 - 39307793
Alignment:
| Q |
24 |
tcacattatattccatttttctagtttaacccctaaaaatttctttttt-ctctcaggtttcagatcttgctaaggagcatcctggtataaaaaactata |
122 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39308127 |
tcacattatattccattttt----tataacccctaaaaatttctttttttctctcaggtttcagatcttgctaaggagcatcctggtataaaaaactata |
39308032 |
T |
|
| Q |
123 |
ggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattgatttcctaaattttt |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39308031 |
ggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattgattttctaaattttt |
39307932 |
T |
|
| Q |
223 |
ctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacacatcatttctcacatt |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
39307931 |
ctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacacttaataacttaaacacagcatttctcacatt |
39307832 |
T |
|
| Q |
323 |
tcataatctatcaactcactctaaatgtatattcatctc |
361 |
Q |
| |
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| T |
39307831 |
ttataatctatcaactcaccctaaatgtatattcatctc |
39307793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 24 - 354
Target Start/End: Complemental strand, 39300296 - 39299973
Alignment:
| Q |
24 |
tcacattatattccatttttctagtttaacccctaaaaatttcttttttctctcaggtttcagatcttgctaaggagcatcctggtataaaaaactatag |
123 |
Q |
| |
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||||||||||||||||||||||||||||| | ||||| |||||| | |||||||||||||| ||||||| |||||| |||| |||||||| ||| || |
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| T |
39300296 |
tcacattatattccatttttctagtttaaacgctaaatatttctctcatctctcaggtttcaattcttgctgaggagcgtccttatataaaaacctacag |
39300197 |
T |
|
| Q |
124 |
gagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattgatttcctaaatttttc |
223 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||||||| |
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| T |
39300196 |
gagctctgatatatcaccatgcagttggttttctgtggcatggtaggtttcaaaatgtacatcttttgccgtc-------atttattttctaaatttttc |
39300104 |
T |
|
| Q |
224 |
tttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacacatcatttctcacattt |
323 |
Q |
| |
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|||||||||||||||||| |||||||||| |||||||| ||||| ||||||| || | |||||||||| ||| |||| || ||||||| || ||| |
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| T |
39300103 |
tttgtccgtctaacaaatcaaacttgtgttcaggtatccaatttatgggatccgcgccaaaccaacgcttaaaaacataaaagcagcatttctaaccttt |
39300004 |
T |
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| Q |
324 |
cataatctatcaactcactctaaatgtatat |
354 |
Q |
| |
|
|| |||||||| |||||| |||| |||||| |
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|
| T |
39300003 |
cacaatctatctgctcactttaaaagtatat |
39299973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 24 - 358
Target Start/End: Complemental strand, 26556024 - 26555689
Alignment:
| Q |
24 |
tcacattatattccatttttctagtttaacccctaaaaatttcttttttctctcaggtttcagatcttgctaaggagcatcctggtataaaaaa------ |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| | | ||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26556024 |
tcacattatattccatttttctagtttaaacgccaaaaaatctttttttctctcaggtttcagatcttgctaaggagcatcctggcataaaaaaaaaaaa |
26555925 |
T |
|
| Q |
118 |
----ctataggagctctgatatatcaccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattgatttcc |
213 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||| || |||||| ||||| |
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| T |
26555924 |
aaaactataggagcagtgatatatcaccatgtagttggttttctgtggcatggtaggtttctaaacatacatattttgccatc----ataatttatttct |
26555829 |
T |
|
| Q |
214 |
taaatttttctttgtccgtctaacaaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacacatcatt |
313 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||| || |||| |
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| T |
26555828 |
taaatttttc--tgtctttctaacaaatcgaacttgtgtttaggtatctgatttacgagatcc---ctggatcaacgcttaaaaacttaaatgcagcatt |
26555734 |
T |
|
| Q |
314 |
tctcacatttcataatctatcaactcactctaaatgtatattcat |
358 |
Q |
| |
|
|||||| ||| |||||||||||||||| ||||| ||| ||||||| |
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| T |
26555733 |
tctcacctttaataatctatcaactcaatctaattgtctattcat |
26555689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 138 - 358
Target Start/End: Complemental strand, 26563876 - 26563660
Alignment:
| Q |
138 |
caccatgtagttggttttctgtggcatggtaggtttcaaaatgtacgtcttttgccgtcatatataattgatttcctaaatttttctttgtccgtctaac |
237 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||| |
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| T |
26563876 |
caccatgtagttggttttctttggcatggtaggtttcaaaatgtacatcttttgccgtcata----atttatttccaaaatttttctttgtccgtctaac |
26563781 |
T |
|
| Q |
238 |
aaatggaacttgtgtttaggtatccgatttacgggatccctgctggatcaacgcttaataacttaaacacatcatttctcacatttcataatctatcaac |
337 |
Q |
| |
|
|||| |||||| |||||||||||||||| ||| |||||||| |||||||| ||||| || ||||||||| ||||| |||| |||||||||||||||| |
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| T |
26563780 |
aaatcaaacttgcgtttaggtatccgattcacgaaatccctgcgggatcaacacttaaaaatttaaacacaacatttttcaccgttcataatctatcaac |
26563681 |
T |
|
| Q |
338 |
tcactctaaatgtatattcat |
358 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
26563680 |
tcaatctaaatgtatattcat |
26563660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 67 - 306
Target Start/End: Original strand, 26554750 - 26554977
Alignment:
| Q |
67 |
ttttttctctcaggtttcagatcttgctaaggagcatcctggtat-aaaaaactataggagctctgatatatcaccatgtagttggttttctgtggcatg |
165 |
Q |
| |
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||||||||| ||||||| |||||||| | || | ||||||| || ||||||||||||||| | ||||||||| |||||||||||||||||| |
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|
| T |
26554750 |
ttttttctcacaggttttagatcttgttgagtatcatcctgacatcaaaaaactataggagttgtgatatatc---------ttggttttctgtggcatg |
26554840 |
T |
|
| Q |
166 |
gtaggtttcaaaatgtacgtcttttg-ccgtcatatataattgatttcctaaatttttctttgtccgtctaacaaatggaacttgtgtttaggtatccga |
264 |
Q |
| |
|
||||||||| |||||||| |||||| ||||||| ||| |||||||||||||||||| || ||| | |||||| ||| |||||||||||||||||| |
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| T |
26554841 |
gtaggtttcgaaatgtacatcttttttccgtcatg----atttatttcctaaatttttcttagttcgtttgacaaattgaa-ttgtgtttaggtatccga |
26554935 |
T |
|
| Q |
265 |
tttacgggatccctgctggatcaacgcttaataacttaaaca |
306 |
Q |
| |
|
|||| | |||| ||||||||||||| |||| |||||||||| |
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|
| T |
26554936 |
tttatgtgatcactgctggatcaacaattaaaaacttaaaca |
26554977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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