View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_2 (Length: 778)
Name: NF14196_low_2
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 163; Significance: 1e-86; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 31992083 - 31991909
Alignment:
| Q |
12 |
gagatgaatataatcatgggacactccaatattgtctttaattttctgttgtacgcgtaaaactaccagcaccactgaatactgcgacaaaagaactgat |
111 |
Q |
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| T |
31992083 |
gagatgaatataatcatgggacactcaaatattgtctttaattttctgttgtaagcgtaaaactaccagcaccactgaatactgcgacaaaagaactgat |
31991984 |
T |
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| Q |
112 |
attggaagtcgatatagcccttaacatgcaactctgcaagacacagaacgcattgttcaccatagaactggtgag |
186 |
Q |
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| T |
31991983 |
attggaagtcgatatagcccttaacatgcaactctgcaagacaaagaacgcattgttcaccatagaactggtgag |
31991909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 180 - 458
Target Start/End: Original strand, 31985609 - 31985877
Alignment:
| Q |
180 |
tggtgaggccattccttggtgttgctgcttcgtttgagaacttgaaaacttgtgactgcagagaattatatatgcgtattgattttgcaagaagttttta |
279 |
Q |
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| T |
31985609 |
tggtgtggccattgcttggtgttgctgctt-gtttgagaacttgaaaacttgtgacttcagagaattacgt---cgtattgattttgcaagaagtttttg |
31985704 |
T |
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| Q |
280 |
ggattttcgttgtatggtttcgatcgttgaatccaaaaatatttcaccaaaatatattttggaagggaggagaagataatgtagggttatgtattatgta |
379 |
Q |
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| T |
31985705 |
acattttcattgaatggtttccatcgttgaatccaaaaaaaatccaccaaaatatattttggaaaggaggaaaagataatgtagcgttatgta------- |
31985797 |
T |
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| Q |
380 |
tttatgtcaaatattttatgtttgt--ccccgtacacataactcagttggtaaggacaatgcattgctatatgcgcgagac |
458 |
Q |
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| T |
31985798 |
-ttatgtcaaatattttatgtctgtccccccgtaaacattactcagctggcaagaacgatgcattattatatgcgtgagac |
31985877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 565 - 706
Target Start/End: Original strand, 31985930 - 31986084
Alignment:
| Q |
565 |
ataaatgtacaaacattgtgatgtaaaaatattatgatatataaatacaattatttatttatttttataaa-------------tcacaaggcaagaaga |
651 |
Q |
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| T |
31985930 |
ataaatgtactaccaatgtgatgtaaaaatattatgacatataaatacaattatatatttatcaataaaaaaggtgaatagaaatcacaaggcaagaaga |
31986029 |
T |
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| Q |
652 |
catgccatacaggctgatacactaactcctcacaatcatatgcaacatctcaaag |
706 |
Q |
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| T |
31986030 |
catgccatacaagctgacacaccaacttctcacaatcatctacaacatctcaaag |
31986084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 31992736 - 31992695
Alignment:
| Q |
79 |
agcaccactgaatactgcgacaaaagaactgatattggaagt |
120 |
Q |
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| T |
31992736 |
agcaccactcaataccgcgacaaaagaactaatattggaagt |
31992695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 71 - 188
Target Start/End: Original strand, 49067511 - 49067628
Alignment:
| Q |
71 |
aaactaccagcaccactgaatactgcgacaaaagaactgatattggaagtcgatatagcccttaacatgcaactctgcaagacacagaacgcattgttca |
170 |
Q |
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| T |
49067511 |
aaactactagcaccgctcaataccgcgacaacagaactgatattggaagtggatatagcccttcgcaagcaactttgcaagacatagaatacatcatcca |
49067610 |
T |
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| Q |
171 |
ccatagaactggtgaggc |
188 |
Q |
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| T |
49067611 |
ccatagaagtggtgaggc |
49067628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 443
Target Start/End: Original strand, 35750266 - 35750295
Alignment:
| Q |
414 |
cataactcagttggtaaggacaatgcattg |
443 |
Q |
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| T |
35750266 |
cataactcagttggtaaggacaatgcattg |
35750295 |
T |
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