View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_21 (Length: 365)
Name: NF14196_low_21
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 9 - 340
Target Start/End: Original strand, 31063563 - 31063894
Alignment:
| Q |
9 |
aacagagattatatcaacaccatcatcaattgcttgatcaatagcagataatacgtcagcaccaaagcaactagcagcatcggttagagaccaacacact |
108 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
31063563 |
aacagatattatgtcaacaccatcatcaattgcttgatcaatagcagataatacatcagcaccaaagcaactagcggcatctgttagagaccagcacact |
31063662 |
T |
|
| Q |
109 |
ttgtaggttgcaaccctagctcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttg |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063663 |
ttgtaggttgcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaagtttccaccggctgttg |
31063762 |
T |
|
| Q |
209 |
atagtgtatgagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggc |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063763 |
atagtgtatgagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggc |
31063862 |
T |
|
| Q |
309 |
tccaattagcttcctgatatgtatatgtagtg |
340 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31063863 |
tccaattagcttcctgatatgtatatgtagtg |
31063894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 9 - 248
Target Start/End: Original strand, 31108650 - 31108889
Alignment:
| Q |
9 |
aacagagattatatcaacaccatcatcaattgcttgatcaatagcagataatacgtcagcaccaaagcaactagcagcatcggttagagaccaacacact |
108 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
31108650 |
aacagatattatgtcaacaccatcatcaattgcttgatcaatagcagataatacatcagcaccaaagcaactagtggcatctgttagagaccagcacact |
31108749 |
T |
|
| Q |
109 |
ttgtaggttgcaaccctagctcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttg |
208 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||| |
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| T |
31108750 |
ttgtaggttgcaactctagctcttggtgaacctccttttatggtaccatttccaatgttaaatatgcttgcacctggtacgaaatttccaccagctgttg |
31108849 |
T |
|
| Q |
209 |
atagtgtatgagtaccgtgacctacaaagtcacgtgctgt |
248 |
Q |
| |
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||||||| |||||||| || || || |||||||| ||||| |
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| T |
31108850 |
atagtgtgtgagtaccatggccaacgaagtcacgcgctgt |
31108889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 31201601 - 31201290
Alignment:
| Q |
13 |
gagattatatcaacaccatcatcaattgcttgatcaatagcagataatacgtcagcaccaaagcaactagcagcatcggttagagaccaacacactttgt |
112 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||| |||||| || ||||||||||| || ||| |||||||| |||||||||| |
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| T |
31201601 |
gagattatatcaacaccatcactaatggcttgatcaatagcagctaatacatcggcaccaaagcagtcttcaagatctaacagagaccagcacactttgt |
31201502 |
T |
|
| Q |
113 |
aggttgcaaccctagctcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttgatag |
212 |
Q |
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|
|||||||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||| |||||| ||||||| |||||||| || ||||||||||| |
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| T |
31201501 |
aggttgcaaccctagctcttggcgaaccaccttttacagtaccattgccaatagcaaatacacttgcatctggtacaaagtttcccccagctgttgatag |
31201402 |
T |
|
| Q |
213 |
tgtatgagtaccgtgacctacaaagtcacgtgctgtacgctgcgatgtgggaagtttgccattatatcgctcataagcatcgctgaaaaatctggctcca |
312 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||| ||||| ||| ||| |||||| ||| |||| ||| ||| ||||||| |||||| |||||||||||| |
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| T |
31201401 |
agtatgagtaccgtggcctaaaaagtcgcgtgcggtacgttgccatgagggaagcttgtcattgtatgcctcgtaagcattgctgaagaatctggctcca |
31201302 |
T |
|
| Q |
313 |
attagcttcctg |
324 |
Q |
| |
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|||||||||||| |
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| T |
31201301 |
attagcttcctg |
31201290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 31051196 - 31051349
Alignment:
| Q |
95 |
gagaccaacacactttgtaggttgcaaccctagctcttggtgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtt |
194 |
Q |
| |
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||||||||||||||||||||||| |||| || | | |||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
31051196 |
gagaccaacacactttgtaggttacaactcttgattttggtgaaccacctttaatggtaccattgccgataccaaatatgcttgcacctggtacgaagtt |
31051295 |
T |
|
| Q |
195 |
tccaccggctgttgatagtgtatgagtaccgtgacctacaaagtcacgtgctgt |
248 |
Q |
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|||||| |||||||||||||| |||||||| || || ||||||||||||||| |
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| T |
31051296 |
tccaccagctgttgatagtgtgtgagtaccatggccgtaaaagtcacgtgctgt |
31051349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 31146427 - 31146639
Alignment:
| Q |
36 |
aattgcttgatcaatagcagataatacgtcagcaccaaagcaa-ctagcagcatcggttagagaccaacacactttgtaggttgcaaccctagctcttgg |
134 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||||||||| ||| || |||| |||||||||||||| |||||||||||||||| || | |||||| |
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| T |
31146427 |
aattgcttgatcaatagcagctaatacatcggcaccaaagcagtcta-caacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttgg |
31146525 |
T |
|
| Q |
135 |
tgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtgacctaca |
234 |
Q |
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|||||| |||||||||||||| |||||||||||||||||| |||| | |||||||||||||||| |||||||||||||| || || || || |||||| |
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| T |
31146526 |
tgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctaca |
31146625 |
T |
|
| Q |
235 |
aagtcacgtgctgt |
248 |
Q |
| |
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||||| || ||||| |
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| T |
31146626 |
aagtctcgcgctgt |
31146639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 36 - 248
Target Start/End: Original strand, 31164253 - 31164465
Alignment:
| Q |
36 |
aattgcttgatcaatagcagataatacgtcagcaccaaagcaa-ctagcagcatcggttagagaccaacacactttgtaggttgcaaccctagctcttgg |
134 |
Q |
| |
|
|||||||||||||||||||| |||||| || ||||| ||||| ||| || |||| |||||||||||||| |||||||||||||||| || | |||||| |
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| T |
31164253 |
aattgcttgatcaatagcagctaatacatcggcaccgaagcagtcta-caacatctgttagagaccaacatgctttgtaggttgcaactcttgatcttgg |
31164351 |
T |
|
| Q |
135 |
tgaacctccttttatggtaccattgccaataccaaatatgcttgcacctggtacgaagtttccaccggctgttgatagtgtatgagtaccgtgacctaca |
234 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||| |||| | |||||||||||||||| |||||||||||||| || || || || |||||| |
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| T |
31164352 |
tgaaccaccttttatggtaccgttgccaataccaaatatggttgcgttttgtacgaagtttccacctgctgttgatagtgtgtgtgtcccatggcctaca |
31164451 |
T |
|
| Q |
235 |
aagtcacgtgctgt |
248 |
Q |
| |
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||||| || ||||| |
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| T |
31164452 |
aagtctcgcgctgt |
31164465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 31051102 - 31051161
Alignment:
| Q |
13 |
gagattatatcaacaccatcatcaattgcttgatcaatagcagataatacgtcagcacca |
72 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||| |
|
|
| T |
31051102 |
gagattatatcaacaccatcactaatggcttgatcgatagcagataatacatcagcacca |
31051161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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