View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14196_low_22 (Length: 362)

Name: NF14196_low_22
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14196_low_22
NF14196_low_22
[»] chr3 (55 HSPs)
chr3 (196-313)||(55385069-55385186)
chr3 (197-313)||(16647171-16647287)
chr3 (198-313)||(43478854-43478969)
chr3 (198-313)||(43476125-43476241)
chr3 (197-313)||(47070401-47070517)
chr3 (196-312)||(50216879-50216995)
chr3 (299-362)||(34694383-34694446)
chr3 (299-362)||(43476253-43476316)
chr3 (296-362)||(19454300-19454366)
chr3 (299-361)||(51402348-51402410)
chr3 (299-361)||(55207613-55207675)
chr3 (301-362)||(7245155-7245216)
chr3 (259-314)||(2271336-2271391)
chr3 (299-362)||(43568927-43568990)
chr3 (299-362)||(51696523-51696586)
chr3 (299-362)||(52570515-52570578)
chr3 (299-361)||(41803059-41803121)
chr3 (196-313)||(600568-600685)
chr3 (198-313)||(16484480-16484595)
chr3 (299-362)||(45101797-45101860)
chr3 (299-362)||(55385198-55385261)
chr3 (276-313)||(4002752-4002789)
chr3 (276-313)||(4004827-4004864)
chr3 (299-362)||(2271261-2271325)
chr3 (269-313)||(36134328-36134372)
chr3 (299-362)||(36134384-36134448)
chr3 (303-359)||(41137773-41137829)
chr3 (299-362)||(13896825-13896888)
chr3 (258-313)||(14043922-14043977)
chr3 (258-313)||(27739591-27739646)
chr3 (303-362)||(41577140-41577199)
chr3 (299-362)||(49219740-49219803)
chr3 (301-362)||(4004751-4004813)
chr3 (276-313)||(12897836-12897873)
chr3 (258-311)||(16611094-16611147)
chr3 (258-311)||(22048106-22048159)
chr3 (299-352)||(24703374-24703427)
chr3 (276-313)||(34543160-34543197)
chr3 (269-313)||(10492032-10492076)
chr3 (269-313)||(24703439-24703483)
chr3 (193-313)||(46989476-46989596)
chr3 (277-313)||(48246425-48246461)
chr3 (278-313)||(28817025-28817060)
chr3 (301-360)||(46347672-46347731)
chr3 (287-361)||(46402405-46402483)
chr3 (299-362)||(49609444-49609507)
chr3 (276-311)||(50998706-50998741)
chr3 (275-313)||(2267041-2267079)
chr3 (276-314)||(19750054-19750092)
chr3 (283-313)||(49219815-49219845)
chr3 (261-313)||(596781-596833)
chr3 (277-313)||(11249548-11249584)
chr3 (269-313)||(16861134-16861178)
chr3 (276-312)||(19988471-19988507)
chr3 (198-254)||(32060295-32060351)
[»] scaffold0176 (1 HSPs)
scaffold0176 (206-362)||(764-920)
[»] chr7 (27 HSPs)
chr7 (206-362)||(34139839-34139995)
chr7 (196-312)||(46738734-46738850)
chr7 (291-362)||(21188375-21188446)
chr7 (299-361)||(30355189-30355251)
chr7 (299-360)||(28980123-28980184)
chr7 (299-362)||(40587722-40587785)
chr7 (299-362)||(41047838-41047901)
chr7 (299-362)||(46863293-46863356)
chr7 (269-313)||(7074-7118)
chr7 (299-362)||(17838711-17838775)
chr7 (299-359)||(43686859-43686919)
chr7 (269-313)||(46908497-46908541)
chr7 (198-254)||(48829897-48829953)
chr7 (299-362)||(28115481-28115544)
chr7 (299-362)||(36394887-36394950)
chr7 (307-362)||(48269710-48269765)
chr7 (304-362)||(45364169-45364227)
chr7 (276-313)||(17840914-17840951)
chr7 (301-362)||(42682057-42682118)
chr7 (277-313)||(8071-8107)
chr7 (277-313)||(42583084-42583120)
chr7 (278-313)||(27657052-27657087)
chr7 (259-313)||(17838645-17838699)
chr7 (276-313)||(12210614-12210651)
chr7 (198-254)||(5537800-5537856)
chr7 (196-280)||(40323200-40323284)
chr7 (281-313)||(45258028-45258060)
[»] chr6 (34 HSPs)
chr6 (198-362)||(29061230-29061394)
chr6 (198-313)||(29076347-29076462)
chr6 (198-313)||(29109880-29109995)
chr6 (198-313)||(29111320-29111435)
chr6 (196-313)||(14012399-14012515)
chr6 (198-313)||(11840274-11840389)
chr6 (299-362)||(12783906-12783969)
chr6 (299-362)||(13401547-13401610)
chr6 (209-308)||(29097857-29097956)
chr6 (196-306)||(19757204-19757314)
chr6 (197-311)||(11687392-11687503)
chr6 (257-313)||(15888824-15888880)
chr6 (199-254)||(29068342-29068397)
chr6 (199-254)||(29083589-29083644)
chr6 (291-362)||(32034341-32034412)
chr6 (301-362)||(29065791-29065852)
chr6 (301-362)||(29074804-29074865)
chr6 (301-362)||(29079568-29079629)
chr6 (301-362)||(29107377-29107438)
chr6 (197-313)||(7361124-7361240)
chr6 (198-306)||(29065674-29065782)
chr6 (198-306)||(29074687-29074795)
chr6 (198-306)||(29079451-29079559)
chr6 (198-306)||(29107260-29107368)
chr6 (197-283)||(11687946-11688032)
chr6 (276-313)||(2109529-2109566)
chr6 (297-361)||(30258263-30258329)
chr6 (283-313)||(31771765-31771795)
chr6 (276-313)||(6760896-6760933)
chr6 (276-309)||(25554717-25554750)
chr6 (198-254)||(117917-117973)
chr6 (269-313)||(26351120-26351164)
chr6 (198-254)||(29286163-29286219)
chr6 (269-309)||(31151066-31151106)
[»] chr1 (45 HSPs)
chr1 (198-362)||(44596795-44596959)
chr1 (276-362)||(49426725-49426812)
chr1 (198-362)||(27487615-27487775)
chr1 (197-313)||(29765553-29765669)
chr1 (196-313)||(51271615-51271732)
chr1 (292-362)||(14174860-14174930)
chr1 (299-362)||(29763168-29763231)
chr1 (299-362)||(42572706-42572769)
chr1 (298-362)||(13147556-13147620)
chr1 (299-362)||(6434809-6434872)
chr1 (299-361)||(49927451-49927513)
chr1 (196-311)||(26944411-26944523)
chr1 (197-313)||(46886411-46886527)
chr1 (198-313)||(44598930-44599045)
chr1 (308-362)||(26637205-26637259)
chr1 (191-313)||(49924783-49924905)
chr1 (276-313)||(19161904-19161941)
chr1 (196-313)||(29438044-29438161)
chr1 (196-316)||(46320477-46320594)
chr1 (197-313)||(94343-94458)
chr1 (258-313)||(586629-586684)
chr1 (307-362)||(13972131-13972186)
chr1 (258-313)||(30194415-30194470)
chr1 (197-255)||(15354640-15354698)
chr1 (198-311)||(32161321-32161431)
chr1 (299-349)||(49395664-49395714)
chr1 (275-313)||(49661757-49661795)
chr1 (276-313)||(4883245-4883282)
chr1 (276-313)||(19914478-19914515)
chr1 (258-311)||(48228328-48228381)
chr1 (197-313)||(2425709-2425824)
chr1 (198-254)||(20114539-20114595)
chr1 (196-243)||(37014882-37014929)
chr1 (198-313)||(51288821-51288936)
chr1 (283-313)||(9710597-9710627)
chr1 (196-254)||(21144687-21144745)
chr1 (259-313)||(49429159-49429213)
chr1 (196-254)||(50117896-50117954)
chr1 (193-254)||(253360-253421)
chr1 (197-254)||(471146-471203)
chr1 (196-313)||(44465528-44465645)
chr1 (198-254)||(253028-253084)
chr1 (315-359)||(4208458-4208502)
chr1 (286-314)||(30905793-30905821)
chr1 (198-254)||(46319684-46319740)
[»] chr4 (39 HSPs)
chr4 (258-362)||(34530744-34530848)
chr4 (192-362)||(39588020-39588190)
chr4 (197-313)||(49889616-49889732)
chr4 (198-309)||(51492006-51492116)
chr4 (198-313)||(44674099-44674213)
chr4 (198-313)||(50278822-50278937)
chr4 (291-362)||(51429278-51429349)
chr4 (196-313)||(16984185-16984302)
chr4 (291-362)||(34154377-34154448)
chr4 (299-362)||(56138313-56138376)
chr4 (287-362)||(56304899-56304974)
chr4 (291-361)||(6283417-6283487)
chr4 (198-312)||(16983456-16983570)
chr4 (197-313)||(50274693-50274809)
chr4 (299-362)||(44561279-44561342)
chr4 (196-313)||(4979941-4980058)
chr4 (299-362)||(958543-958606)
chr4 (196-313)||(39590592-39590709)
chr4 (269-313)||(14200566-14200610)
chr4 (297-362)||(42885508-42885575)
chr4 (258-313)||(28081452-28081507)
chr4 (258-313)||(38369206-38369261)
chr4 (300-349)||(4786296-4786345)
chr4 (197-254)||(6280790-6280847)
chr4 (276-313)||(21022912-21022949)
chr4 (276-313)||(28084014-28084051)
chr4 (276-313)||(40833634-40833671)
chr4 (276-313)||(46254472-46254509)
chr4 (269-313)||(7485685-7485729)
chr4 (193-245)||(28320488-28320540)
chr4 (297-360)||(243296-243359)
chr4 (276-311)||(23220690-23220725)
chr4 (299-361)||(28081519-28081582)
chr4 (275-313)||(51036514-51036552)
chr4 (269-314)||(21015744-21015789)
chr4 (276-313)||(51037492-51037529)
chr4 (299-359)||(1041996-1042056)
chr4 (296-328)||(37865200-37865232)
chr4 (269-313)||(56565762-56565806)
[»] chr8 (34 HSPs)
chr8 (198-313)||(41250096-41250210)
chr8 (258-362)||(22547463-22547567)
chr8 (297-362)||(18441390-18441455)
chr8 (296-362)||(3395924-3395990)
chr8 (198-309)||(39939243-39939354)
chr8 (196-313)||(39601636-39601753)
chr8 (198-311)||(7577617-7577727)
chr8 (299-361)||(41858073-41858135)
chr8 (299-359)||(26451541-26451601)
chr8 (198-254)||(44052309-44052365)
chr8 (258-313)||(22550889-22550944)
chr8 (293-361)||(37779707-37779773)
chr8 (269-313)||(2335172-2335216)
chr8 (269-313)||(27501605-27501649)
chr8 (269-313)||(32584057-32584101)
chr8 (198-254)||(44050749-44050805)
chr8 (258-313)||(28617562-28617617)
chr8 (299-362)||(41274653-41274716)
chr8 (299-361)||(42602521-42602583)
chr8 (198-313)||(43262359-43262470)
chr8 (276-313)||(5533049-5533086)
chr8 (192-245)||(26451414-26451467)
chr8 (276-313)||(38604272-38604309)
chr8 (197-254)||(39604402-39604459)
chr8 (276-313)||(44933871-44933908)
chr8 (269-313)||(41016419-41016463)
chr8 (198-313)||(34366846-34366960)
chr8 (304-362)||(24860448-24860506)
chr8 (198-311)||(27704559-27704669)
chr8 (195-313)||(34235147-34235264)
chr8 (296-349)||(38871831-38871884)
chr8 (276-313)||(43363284-43363321)
chr8 (198-254)||(35389442-35389498)
chr8 (276-312)||(44841899-44841935)
[»] chr5 (32 HSPs)
chr5 (1-172)||(19041271-19041434)
chr5 (196-313)||(13568099-13568216)
chr5 (291-361)||(42865754-42865824)
chr5 (299-362)||(542739-542802)
chr5 (198-313)||(7757259-7757374)
chr5 (198-313)||(7762268-7762382)
chr5 (299-362)||(18307315-18307378)
chr5 (198-313)||(43094600-43094715)
chr5 (299-362)||(25497572-25497635)
chr5 (194-309)||(43093938-43094053)
chr5 (201-311)||(1397376-1397486)
chr5 (276-313)||(8539540-8539577)
chr5 (299-362)||(8537226-8537290)
chr5 (299-362)||(11346068-11346132)
chr5 (198-254)||(38407133-38407189)
chr5 (299-362)||(3600398-3600461)
chr5 (195-254)||(30887443-30887502)
chr5 (299-358)||(35564322-35564381)
chr5 (198-311)||(2532530-2532640)
chr5 (276-313)||(3891495-3891532)
chr5 (276-313)||(11346019-11346056)
chr5 (276-313)||(11348499-11348536)
chr5 (258-313)||(14687-14742)
chr5 (234-313)||(31788135-31788214)
chr5 (196-254)||(9784233-9784291)
chr5 (299-349)||(20192414-20192464)
chr5 (283-313)||(30887384-30887414)
chr5 (198-283)||(2532020-2532105)
chr5 (198-311)||(42937126-42937239)
chr5 (269-313)||(2170579-2170623)
chr5 (269-313)||(5200380-5200424)
chr5 (261-313)||(35671079-35671131)
[»] chr2 (26 HSPs)
chr2 (197-313)||(43870145-43870261)
chr2 (198-313)||(7189975-7190089)
chr2 (299-362)||(2920465-2920528)
chr2 (299-362)||(24512228-24512291)
chr2 (299-362)||(39393098-39393161)
chr2 (198-312)||(3943217-3943330)
chr2 (300-362)||(40679546-40679608)
chr2 (198-309)||(23346715-23346825)
chr2 (300-362)||(26858175-26858237)
chr2 (299-361)||(41500184-41500246)
chr2 (299-362)||(2648178-2648241)
chr2 (198-313)||(23347352-23347466)
chr2 (269-313)||(10425843-10425887)
chr2 (297-362)||(29093780-29093842)
chr2 (299-362)||(43491170-43491233)
chr2 (276-313)||(28477091-28477128)
chr2 (276-313)||(30803042-30803079)
chr2 (299-362)||(34638201-34638261)
chr2 (276-313)||(36510880-36510917)
chr2 (198-313)||(24607592-24607707)
chr2 (287-361)||(28472136-28472214)
chr2 (299-357)||(10365746-10365804)
chr2 (199-245)||(29093925-29093971)
chr2 (276-313)||(10424851-10424888)
chr2 (269-313)||(10825223-10825267)
chr2 (198-254)||(28137791-28137847)
[»] scaffold0184 (2 HSPs)
scaffold0184 (196-307)||(18323-18434)
scaffold0184 (198-312)||(17965-18079)
[»] scaffold0078 (2 HSPs)
scaffold0078 (196-307)||(54410-54521)
scaffold0078 (198-312)||(54765-54879)
[»] scaffold0199 (3 HSPs)
scaffold0199 (299-362)||(12336-12400)
scaffold0199 (259-311)||(12414-12466)
scaffold0199 (258-314)||(10646-10702)
[»] scaffold0192 (2 HSPs)
scaffold0192 (299-362)||(18848-18911)
scaffold0192 (198-254)||(25886-25942)
[»] scaffold0180 (1 HSPs)
scaffold0180 (258-313)||(15646-15701)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 55385069 - 55385186
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||   || ||||||  |||||  ||||||||||||||||||||    
T  55385069 ttgaaaattgttgttcccacattgcataaggttgtggcacacgagtaattgacgtttttgccccctcggcagttaactgccgaagttttagaaatccggc 55385168  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||||||||||||    
T  55385169 tgcagttaactgccgagg 55385186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 16647287 - 16647171
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    |||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||||||   || ||||||  |||||  ||| |||||||||||||||||    
T  16647287 tgagaattgttgttcccacattgcataaggttctggcacacgagtacttgacgtttttgccccctcggcagttaactgccgatgttttagaaatccggct 16647188  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||||||||||    
T  16647187 gcagttaactgccgagg 16647171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 43478969 - 43478854
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||||||||||||||||| ||||| |||||| || |||||||| ||| ||||||   || ||||||  |||||   |||||||||||||||||||||    
T  43478969 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatgatgtttttgtcccctcggcagttaactgctgaagttttagaaatccggctg 43478870  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  43478869 cagttaactgccgagg 43478854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 43476125 - 43476241
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttag-aaatccggct 296  Q
    |||||||||||||| |||||| ||||| |||||| || |||||||| ||||||||||   || |||| |  |||||  ||||||||||| ||||||||||    
T  43476125 gagaattgttgttctcacattacataaggttgtgccacacgagtaaatgacgtttttgccccctcggaagttaactgccgaagttttagaaaatccggct 43476224  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||||||||||    
T  43476225 gcagttaactgccgagg 43476241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 47070401 - 47070517
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||   |  ||||||| |||||  | || |||||||||| |||||    
T  47070401 tgagaattgttgttcccacattgcataagactgtggcacacgagtaattgacgtttttgccctatcggcaattaactgccaaatttttagaaattcggct 47070500  T
Q  297 gcagttaactgccgagg 313  Q
    | |||||||| ||||||    
T  47070501 gtagttaacttccgagg 47070517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 50216995 - 50216879
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||||||||||||||||  |||| ||||||||| |||||||||||||||||||   || | ||||  |||||  ||| |  ||| |||||||||    
T  50216995 ttgagaattgttgttcccacatttgataaggttgtggcacacgagtaattgacgtttttgccccattggcagttaactgccgaggaattaaaaatccggc 50216896  T
Q  296 tgcagttaactgccgag 312  Q
    |||||||||||||||||    
T  50216895 tgcagttaactgccgag 50216879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 34694446 - 34694383
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  34694446 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 34694383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 43476253 - 43476316
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| |||| |||||||||||||| |||| |||||||||||||||||||||||    
T  43476253 agttaactgccgaggatcttttgctacaaatctgacagaagctctctcatccattattcatctc 43476316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 296 - 362
Target Start/End: Complemental strand, 19454366 - 19454300
Alignment:
Q  296 tgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||||||| |||||| |||||||||||  |||| |||||||||||||||||||||||    
T  19454366 tgcagttaactgccgaggatcttctactacaaatctggcagaagctctctcatccattattcatctc 19454300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 51402410 - 51402348
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  51402410 agttaactgccgaggatcttctgctacaaatctgtcagaagctctctcatccattattcatct 51402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 55207675 - 55207613
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  55207675 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 55207613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 7245155 - 7245216
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||  ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  7245155 ttaactgccgagtatcttctgctacaaatctgacagaagctctctcatccattattcatctc 7245216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 2271391 - 2271336
Alignment:
Q  259 cttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgaggg 314  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  2271391 cttcggcagttaactgtcgaagttttagaaatccggctgcagttaactgccgaggg 2271336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 43568927 - 43568990
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||| |||| ||||||| ||||||||||| |||| |||||||||||||||||||||||    
T  43568927 agttaactgctgaggatcttctgttacaaatctgacagaagctctctcatccattattcatctc 43568990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 51696586 - 51696523
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||| ||||||||  |||| |||||||||||||||||||||||    
T  51696586 agttaactgccgaggatcttctgctgcaaatctggcagaagctctctcatccattattcatctc 51696523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 52570578 - 52570515
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| |||||| |||||||||||  |||||||||||||| |||||||||||||    
T  52570578 agttaactgccgaggatcttctactacaaatctggcagaaactctctcattcattattcatctc 52570515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 41803059 - 41803121
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||| |||| |||||||||||||  |||| ||||||||||||||||||||||    
T  41803059 agttaactgccgaggatcttttgctacaaatctggcagaagctctctcatccattattcatct 41803121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 600685 - 600568
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||||||||||||||||| | || | || |||| |||||||| ||||||||||   || ||| ||  |||||  ||||||||| ||||||||||    
T  600685 ttgagaattgttgttcccacattgtagaaggctgcggcacacgagtaaatgacgtttttgcgccctcgacagttaactgccgaagttttggaaatccggc 600586  T
Q  296 tgcagttaactgccgagg 313  Q
     ||||||||||| |||||    
T  600585 cgcagttaactgtcgagg 600568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 16484595 - 16484480
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||| |||||||| ||||  |||||| || |||||||| |||| |||||   |  ||||||  || || ||||| |||||| ||||||||||    
T  16484595 gagaattgttgtacccacattacatagggttgtgccacacgagtaaatgacatttttgccctctcggcagttacctgtcgaaattttagtaatccggctg 16484496  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  16484495 cagttaactgccgagg 16484480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 45101860 - 45101797
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||  ||||||||||||    
T  45101860 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatatattattcatctc 45101797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 55385198 - 55385261
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||| ||||| ||||||||||||||||||  |||| ||||||||||||||||| |||||    
T  55385198 agttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattaatctc 55385261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 4002752 - 4002789
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4002752 cgaagttttagaaatccggctgcagttaactgccgagg 4002789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 4004864 - 4004827
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4004864 cgaagttttagaaatccggctgcagttaactgccgagg 4004827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 2271325 - 2271261
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| || ||||||||||| |||||||||    
T  2271325 agttaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccataattcatctc 2271261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 36134328 - 36134372
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||| |||||||||||||||||| |||||||||||||||||||    
T  36134328 taactaccgaagttttagaaatccgtctgcagttaactgccgagg 36134372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 36134384 - 36134448
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| || |||| ||||||||||||||||    
T  36134384 agttaactgccgaggatcttctgctacaaatctggcagaatctcctcttatccattattcatctc 36134448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 41137773 - 41137829
Alignment:
Q  303 aactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcat 359  Q
    |||| |||||| ||||||||||||||||||  |||| ||||||||||||||||||||    
T  41137773 aactaccgaggatcttctgctacaaatctggcagaagctctctcatccattattcat 41137829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 13896888 - 13896825
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||| | | |||| |||||||||||  |||| |||||||||||||||||||||||    
T  13896888 agttaactgccgaagattttctactacaaatctggcagaagctctctcatccattattcatctc 13896825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 14043977 - 14043922
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  ||||| |||||||||||||||  ||||||||||||||||||||||    
T  14043977 ccttcggcagttaactgtcgaagttttagaaaatcggctgcagttaactgccgagg 14043922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 27739646 - 27739591
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  ||||||||||||||| ||||||||||||||||||||||    
T  27739646 ccttcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgagg 27739591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 362
Target Start/End: Original strand, 41577140 - 41577199
Alignment:
Q  303 aactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||| |||||||||||||||||   |||| |||||||||||||||| ||||||    
T  41577140 aactgccgaggatcttctgctacaaatcttgcagaagctctctcatccattatccatctc 41577199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 49219803 - 49219740
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||  ||||| ||||||||||||||| ||| |||| ||||| |||||||||||||||||    
T  49219803 agttaactatcgaggatcttctgctacaaatttgacagaagctctcccatccattattcatctc 49219740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 362
Target Start/End: Complemental strand, 4004813 - 4004751
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    ||||||||||||| |||||||||||||| |||  |||| || |||||||||||||||||||||    
T  4004813 ttaactgccgaggatcttctgctacaaacctggcagaatctcctctcatccattattcatctc 4004751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 12897836 - 12897873
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  12897836 cgaagttttagaaatacggctgcagttaactgccgagg 12897873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Original strand, 16611094 - 16611147
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccga 311  Q
    |||||||||  |||||| |||||||||||||| ||||| |||||||||||||||    
T  16611094 ccttcggcagttaactaccgaagttttagaaaaccggcggcagttaactgccga 16611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 22048159 - 22048106
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccga 311  Q
    |||||||||  |||||| |||||||||||||| ||||| |||||||||||||||    
T  22048159 ccttcggcagttaactaccgaagttttagaaaaccggcggcagttaactgccga 22048106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 24703427 - 24703374
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccat 352  Q
    ||||||||||||| | ||||||||||||||||||  |||| |||||||||||||    
T  24703427 agttaactgccgatgatcttctgctacaaatctggcagaagctctctcatccat 24703374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 34543197 - 34543160
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34543197 cgaagttttagaaatacggctgcagttaactgccgagg 34543160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 10492032 - 10492076
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||||||| |||||||||||||||| |||||    
T  10492032 taactgtcgaagttttagaaatacggctgcagttaactgacgagg 10492076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 24703483 - 24703439
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||    
T  24703483 taactaccgaagttttagaaattcggatgcagttaactgccgagg 24703439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 313
Target Start/End: Original strand, 46989476 - 46989596
Alignment:
Q  193 atgttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatcc 292  Q
    |||| |||||||||||||  ||||||  |||| |||||| ||||||||||| ||||||||||   |  ||||||  |||||| |||    || ||| |||    
T  46989476 atgtagagaattgttgtttacacatttaataaggttgtgtcatacgagtaaatgacgtttttgccctctcggcagttaactaccgagaaatttgaattcc 46989575  T
Q  293 ggctgcagttaactgccgagg 313  Q
    |||||||||||||||||||||    
T  46989576 ggctgcagttaactgccgagg 46989596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 48246425 - 48246461
Alignment:
Q  277 gaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||||||||||||||||| |||||    
T  48246425 gaagttttagaaatccggctgcagttaactgtcgagg 48246461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 28817060 - 28817025
Alignment:
Q  278 aagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||| ||||||||||||||||||||||    
T  28817060 aagttttagaaatacggctgcagttaactgccgagg 28817025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 301 - 360
Target Start/End: Complemental strand, 46347731 - 46347672
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatc 360  Q
    ||||||| ||| | |||||||||||||||| |  ||||||||||||||||||| ||||||    
T  46347731 ttaactgtcgaagatcttctgctacaaatcagggagaaactctctcatccattgttcatc 46347672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 46402405 - 46402483
Alignment:
Q  287 aaatccggctgcagttaactgccgagggtcttctgc--tacaaa-tctgatagaaactc-tctcatccattattcatct 361  Q
    ||||||||||||||||||||||||||| ||||||||  |||||| ||||  |||| ||| |||||||||||||| ||||    
T  46402405 aaatccggctgcagttaactgccgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattgatct 46402483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 49609444 - 49609507
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||||  |||||||||||||||||  | || |||||| || |||||||||||||    
T  49609444 agttaactgccgaggaacttctgctacaaatctggcataagctctcttattcattattcatctc 49609507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 311
Target Start/End: Complemental strand, 50998741 - 50998706
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccga 311  Q
    |||||||||| |||||||||||||||||||||||||    
T  50998741 cgaagttttataaatccggctgcagttaactgccga 50998706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 2267041 - 2267079
Alignment:
Q  275 tcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  2267041 tcgaagttttagatatccggctgcagttaactaccgagg 2267079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 19750054 - 19750092
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgaggg 314  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  19750054 cgaaattttagaaatacggctgcagttaactgccgaggg 19750092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 49219845 - 49219815
Alignment:
Q  283 ttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||||||||||||||||||||    
T  49219845 ttagaaatccggctgcagttaactgccgagg 49219815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 596781 - 596833
Alignment:
Q  261 tcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||| |||||  |||||||||  |||| ||||||||||||||||||||||    
T  596781 tcggcaattaactgccgaagttttgtaaattcggctgcagttaactgccgagg 596833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 11249584 - 11249548
Alignment:
Q  277 gaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||  |||||||||||||||||||||    
T  11249584 gaagttttagaaatatggctgcagttaactgccgagg 11249548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 16861134 - 16861178
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| ||||||||||||||| |||| ||||||||||| ||||||    
T  16861134 taactgtcgaagttttagaaaaccggatgcagttaactaccgagg 16861178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 19988471 - 19988507
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgag 312  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  19988471 cgaagttttagaaatacggctgcagttgactgccgag 19988507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 32060351 - 32060295
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||| ||  |||||||||||| | || ||||||||||||||| ||||||||    
T  32060351 gagaattgtttttaacacattgcataaggctgaggcatacgagtaatttacgttttt 32060295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 764 - 920
Alignment:
Q  206 ttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctgcagttaac 305  Q
    |||||||||||||  |||| ||||||||| |||||||||| ||||||||   ||||||| || |||||  |||||  |||||||||||||||||||||||    
T  764 ttgttcccacatttgataaggttgtggcacacgagtaatttacgtttttgccccttcggtaattaactgccgaagaattagaaatccggctgcagttaac 863  T
Q  306 tgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||| |||||  |||||||||||  |||| |||||| ||||||||||||||||    
T  864 tgccgaggatcttcctctacaaatctggcagaagctctcttatccattattcatctc 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 206 - 362
Target Start/End: Original strand, 34139839 - 34139995
Alignment:
Q  206 ttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctgcagttaac 305  Q
    |||||||||||||  |||| ||||||||| |||||||||| ||||||||   ||||||| || |||||  |||||  |||||||||||||||||||||||    
T  34139839 ttgttcccacatttgataaggttgtggcacacgagtaatttacgtttttgccccttcggtaattaactgccgaagaattagaaatccggctgcagttaac 34139938  T
Q  306 tgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||| |||||  |||||||||||  |||| |||||| ||||||||||||||||    
T  34139939 tgccgaggatcttcctctacaaatctggcagaagctctcttatccattattcatctc 34139995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 46738734 - 46738850
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    ||||||||||||||||||||||| ||||| |||||| || ||||| || ||||||||||   |  ||||||  |||||  ||||||||||||||||||||    
T  46738734 ttgagaattgttgttcccacattacataaggttgtgccacacgagcaaatgacgtttttgccctctcggcagttaactgccgaagttttagaaatccggc 46738833  T
Q  296 tgcagttaactgccgag 312  Q
    |||||||||||||||||    
T  46738834 tgcagttaactgccgag 46738850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 21188446 - 21188375
Alignment:
Q  291 ccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  21188446 ccggctgcagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 21188375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 30355251 - 30355189
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  30355251 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 30355189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 28980184 - 28980123
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatc 360  Q
    ||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||    
T  28980184 agttaactgccgaggattttctgctacaaatctgacagaagctctctcatccattattcatc 28980123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 40587722 - 40587785
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| |||| ||||| |||||||| |||| |||||||||||||||||||||||    
T  40587722 agttaactgccgaggatcttatgctataaatctgaaagaagctctctcatccattattcatctc 40587785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 41047838 - 41047901
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||   ||| |||||||||||||||||||||||    
T  41047838 agttaactgccgaggatcttctgctacaaatctggaggaagctctctcatccattattcatctc 41047901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 46863356 - 46863293
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||| | ||||||||||||||||||  |||| |||| ||||||||||||||||||    
T  46863356 agttaactgccgaagatcttctgctacaaatctggcagaagctctttcatccattattcatctc 46863293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 7074 - 7118
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  7074 taactaccgaagttttagaaatacggctgcagttaactgccgagg 7118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 17838711 - 17838775
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    ||||||||||||| | ||||||||||||||||||  |||| || |||||||||||||||||||||    
T  17838711 agttaactgccgacgatcttctgctacaaatctggcagaatctcctctcatccattattcatctc 17838775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 43686919 - 43686859
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcat 359  Q
    ||||||||||||||  | ||||||||||||||||| | || ||||||||||||||||||||    
T  43686919 agttaactgccgagaattttctgctacaaatctgacataagctctctcatccattattcat 43686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 46908541 - 46908497
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  46908541 taactgtcgaagttttagaaatacggctgcagttaactgccgagg 46908497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 48829897 - 48829953
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||||||||||  |||| ||||||||| |||||||||| ||||||||    
T  48829897 gagaattgttgttcccacatttgataaggttgtggcacacgagtaatttacgttttt 48829953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 28115544 - 28115481
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||  ||||||||||||||||||||||   | || |||||||||||||||||||||||    
T  28115544 agttaactgttgagggtcttctgctacaaatctagcataagctctctcatccattattcatctc 28115481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 36394950 - 36394887
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||| |||||| ||||||||||||||||||  |||| ||||||||||| ||||| |||||    
T  36394950 agttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccgttattaatctc 36394887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 48269710 - 48269765
Alignment:
Q  307 gccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||| ||||||||||||||||||| | ||  ||||||||||||||||||||||    
T  48269710 gccgaggatcttctgctacaaatctgacaaaagttctctcatccattattcatctc 48269765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 45364227 - 45364169
Alignment:
Q  304 actgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||| ||||| |||||||||||| ||||| |||||| ||| ||||||||||||    
T  45364227 actgccgaggatcttcggctacaaatctggtagaagctctcttatctattattcatctc 45364169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 17840951 - 17840914
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||||||| |||||||||||||||||||    
T  17840951 cgaagttttagaaatccgactgcagttaactgccgagg 17840914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 42682057 - 42682118
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||| |||||||||||||||||   | ||  ||||||||||||||||||||||    
T  42682057 ttaactgccgaggatcttctgctacaaatctagcataagttctctcatccattattcatctc 42682118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 8107 - 8071
Alignment:
Q  277 gaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||| ||||||||||||||||||||||    
T  8107 gaagttttagaaatacggctgcagttaactgccgagg 8071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 313
Target Start/End: Complemental strand, 42583120 - 42583084
Alignment:
Q  277 gaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42583120 gaagttttagaaatacggctgcagttaactgccgagg 42583084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 27657052 - 27657087
Alignment:
Q  278 aagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||| ||||||||||||||||||||||    
T  27657052 aagttttagaaatacggctgcagttaactgccgagg 27657087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Original strand, 17838645 - 17838699
Alignment:
Q  259 cttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||  |||||  |||||||||||||||||||||||||| |||| ||||||    
T  17838645 cttcggcagttaactgccgaagttttagaaatccggctgcagtaaactaccgagg 17838699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 12210651 - 12210614
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  12210651 cgaagttttagaaatacggccgcagttaactgccgagg 12210614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 5537800 - 5537856
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||||||||||  |||| | ||||||| |||| ||||| ||||||||    
T  5537800 gagaattgttgttcccacatttgataaggctgtggcacacgaataatttacgttttt 5537856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 280
Target Start/End: Original strand, 40323200 - 40323284
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaag 280  Q
    ||||||||||||||||||||||| ||||| | |||| || | |||||| |||| |||||   ||| |||||| |||||| |||||    
T  40323200 ttgagaattgttgttcccacattacataaggctgtgccacatgagtaaatgacatttttgcccctgcggcaattaactaccgaag 40323284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 45258060 - 45258028
Alignment:
Q  281 ttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||| ||||||||||||||||||||||    
T  45258060 ttttagaaatacggctgcagttaactgccgagg 45258028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 362
Target Start/End: Original strand, 29061230 - 29061394
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| ||||| | ||||||| |||||||||| || |||||   || ||||||  |||||  ||| |  |||||||| ||||||    
T  29061230 gagaattggtgttcccacattacataaggctgtggcacacgagtaatttacttttttgccccctcggcagttaactgccgaggaattagaaattcggctg 29061329  T
Q  298 cagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  29061330 cagttaacttccgaggatcttctgctacaaatctggtagaagctctctcatccattattcatctc 29061394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 29076462 - 29076347
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||   |||||||||  ||||| |||||||||||||||||||||||    
T  29076462 gagaattgttgttcccacgttgcataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaactgtcgaagttttagaaatccggctg 29076363  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||| ||||    
T  29076362 cagttaactgctgagg 29076347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 29109995 - 29109880
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||   |||||||||  ||||| |||||||||||||||||||||||    
T  29109995 gagaattgttgttcccacgttgcataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaactgtcgaagttttagaaatccggctg 29109896  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||| ||||    
T  29109895 cagttaactgctgagg 29109880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 29111435 - 29111320
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||   |||||||||  ||||| |||||||||||||||||||||||    
T  29111435 gagaattgttgttcccacgttgcataaggctgtggcacacaagtaattgacgtttttgccccttcggcagttaactgtcgaagttttagaaatccggctg 29111336  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||| ||||    
T  29111335 cagttaactgctgagg 29111320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 14012515 - 14012399
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||||||||||||||||  |||| | |||| || |||||||| ||||||||||   ||||| |||  |||||  ||||||||||||||||||||    
T  14012515 ttgagaattgttgttcccacatttaataaggctgtgccacacgagtaaatgacgtttttgc-ccttcagcagttaactgccgaagttttagaaatccggc 14012417  T
Q  296 tgcagttaactgccgagg 313  Q
    | ||||||||||||||||    
T  14012416 ttcagttaactgccgagg 14012399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 11840389 - 11840274
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||||||||||||||||||||||| | |||| || |||||||||||| ||||||   || | || |  |||||  ||||||||||||||| ||||||    
T  11840389 gagaattgttgttcccacattgcataaggctgtgacacacgagtaattgatgtttttgcccccttggtagttaactgccgaagttttagaaattcggctg 11840290  T
Q  298 cagttaactgccgagg 313  Q
    |||||||||| |||||    
T  11840289 cagttaactgtcgagg 11840274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 12783969 - 12783906
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  | || |||||||||||||||||||||||    
T  12783969 agttaactgccgaggatcttctgctacaaatctggaaaaagctctctcatccattattcatctc 12783906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 13401547 - 13401610
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||| |||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||    
T  13401547 agttaactaccgaggatcttctgctacaaatatgacagaagctctctcatccattattcatctc 13401610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 29097956 - 29097857
Alignment:
Q  209 ttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgc 308  Q
    ||||||| |||||||| | | ||||| ||||||||||||||| |||   |  ||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  29097956 ttcccacgttgcataaggatttggcacacgagtaattgacgtatttgttctctcggcaattaactgtcgaaattttagaaatccggctgcagttaactgc 29097857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 19757204 - 19757314
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||| | ||||||| |||||||| ||| ||||| |||| |||||||| |||||   || | ||||| ||||| ||||||||||||||||||  |    
T  19757204 ttgagaattgctattcccaccttgcataaggttctggcacacgaataattgacatttttgcccccttggcaattaactgtcgaagttttagaaatccaac 19757303  T
Q  296 tgcagttaact 306  Q
    |||||||||||    
T  19757304 tgcagttaact 19757314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 311
Target Start/End: Original strand, 11687392 - 11687503
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||| ||||||||||||  |||| |||||| || |||||||| |||||||||||  ||| |||||  |||||| ||||||||   ||| ||||||    
T  11687392 tgagaattgctgttcccacattatataaagttgtgccacacgagtaaatgacgtttttacccctgcggcagttaactaccgaagttt---aaaaccggct 11687488  T
Q  297 gcagttaactgccga 311  Q
    |||||||||| ||||    
T  11687489 gcagttaactcccga 11687503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 15888880 - 15888824
Alignment:
Q  257 accttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||  |||||| |||||||||||||| |||||||||||||||||||||||    
T  15888880 accttcggcagttaactaccgaagttttagaaaaccggctgcagttaactgccgagg 15888824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 29068397 - 29068342
Alignment:
Q  199 agaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||    
T  29068397 agaattgctgttcccacgttgcataatgttgtggcacatgagtaattgacgttttt 29068342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Complemental strand, 29083644 - 29083589
Alignment:
Q  199 agaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||| ||||||||| |||||||||||||||||| | |||||||||||||||||    
T  29083644 agaattgctgttcccacgttgcataatgttgtggcacatgagtaattgacgttttt 29083589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 32034412 - 32034341
Alignment:
Q  291 ccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||||||||| | ||||||||||||||||||  ||||  ||||| ||||||||||| ||||    
T  32034412 ccggctgcagttaactgccgatgatcttctgctacaaatctggcagaagatctcttatccattattcgtctc 32034341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 29065791 - 29065852
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||| ||||| ||||||||||||||||||   ||| |||||||||||||||||||||||    
T  29065791 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29065852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 29074804 - 29074865
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||| ||||| ||||||||||||||||||   ||| |||||||||||||||||||||||    
T  29074804 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29074865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 29079568 - 29079629
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||| ||||| ||||||||||||||||||   ||| |||||||||||||||||||||||    
T  29079568 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29079629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 362
Target Start/End: Original strand, 29107377 - 29107438
Alignment:
Q  301 ttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||| ||||| ||||||||||||||||||   ||| |||||||||||||||||||||||    
T  29107377 ttaactgtcgaggatcttctgctacaaatctggcggaagctctctcatccattattcatctc 29107438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 7361124 - 7361240
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||| ||||  |||||||||||| | ||||||| |||||||||| ||||||||   || ||||||| |||||   || | |||  ||| ||||||    
T  7361124 tgagaattgctgttgacacattgcataaggctgtggcacacgagtaatttacgtttttgtcccgtcggcaattaactgctgaggattttaaaaaccggct 7361223  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||||||||||    
T  7361224 gcagttaactgccgagg 7361240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 29065674 - 29065782
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||||||  |||| | ||||||| |||||||||| || |||||   || ||||||  |||||  ||| |  |||||||||||||||    
T  29065674 gagaattgttgttcccacattaaataaggctgtggcacacgagtaatttacttttttgccccctcggcagttaactgccgaggaattagaaatccggctg 29065773  T
Q  298 cagttaact 306  Q
    |||||||||    
T  29065774 cagttaact 29065782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 29074687 - 29074795
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||||||  |||| | ||||||| |||||||||| || |||||   || ||||||  |||||  ||| |  |||||||||||||||    
T  29074687 gagaattgttgttcccacattaaataaggctgtggcacacgagtaatttacttttttgccccctcggcagttaactgccgaggaattagaaatccggctg 29074786  T
Q  298 cagttaact 306  Q
    |||||||||    
T  29074787 cagttaact 29074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 29079451 - 29079559
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||||||  |||| | ||||||| |||||||||| || |||||   || ||||||  |||||  ||| |  |||||||||||||||    
T  29079451 gagaattgttgttcccacattaaataaggctgtggcacacgagtaatttacttttttgccccctcggcagttaactgccgaggaattagaaatccggctg 29079550  T
Q  298 cagttaact 306  Q
    |||||||||    
T  29079551 cagttaact 29079559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 306
Target Start/End: Original strand, 29107260 - 29107368
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||||||  |||| | ||||||| |||||||||| || |||||   || ||||||  |||||  ||| |  |||||||||||||||    
T  29107260 gagaattgttgttcccacattaaataaggctgtggcacacgagtaatttacttttttgccccctcggcagttaactgccgaggaattagaaatccggctg 29107359  T
Q  298 cagttaact 306  Q
    |||||||||    
T  29107360 cagttaact 29107368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 283
Target Start/End: Complemental strand, 11688032 - 11687946
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttt 283  Q
    ||||||||| |||||||||||| ||||| | |||| || |||||||| |||||||||||  ||| |||||  |||||| ||||||||    
T  11688032 tgagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttacccctgcggcagttaactaccgaagttt 11687946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 2109529 - 2109566
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2109529 cgaagttttagaaatacggctgcagttaactgccgagg 2109566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 361
Target Start/End: Complemental strand, 30258329 - 30258263
Alignment:
Q  297 gcagttaactgccgagggtcttctgctac--aaatctgatagaaactctctcatccattattcatct 361  Q
    |||||||||||||||   ||||| |||||  |||||||| |||| ||||||||||||||||||||||    
T  30258329 gcagttaactgccgataatcttcagctacgaaaatctgagagaagctctctcatccattattcatct 30258263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 31771795 - 31771765
Alignment:
Q  283 ttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||||||||||||||||||||    
T  31771795 ttagaaatccggctgcagttaactgccgagg 31771765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 6760933 - 6760896
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  6760933 cgaagttttagaaatacggctgcagttaattgccgagg 6760896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 309
Target Start/End: Original strand, 25554717 - 25554750
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgcc 309  Q
    ||||||||||||||| ||||||||||||||||||    
T  25554717 cgaagttttagaaatacggctgcagttaactgcc 25554750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 117973 - 117917
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||| ||||||||||||  |||| |||||| || |||||||||| ||||||||    
T  117973 gagaattgatgttcccacatttgataaggttgtgtcacacgagtaatttacgttttt 117917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 26351164 - 26351120
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||| || ||||| |||||||||||||||||    
T  26351164 taactgtcgaagttttagtaaaccggcggcagttaactgccgagg 26351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 29286163 - 29286219
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||  |||||||||||| |||| |||| || ||||||| ||||||||    
T  29286163 gagaattgttgttgacacattgcataaggttgaggcacacaagtaatttacgttttt 29286219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 31151106 - 31151066
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgcc 309  Q
    ||||| ||||| |||| ||||||||||||||||||||||||    
T  31151106 taactgtcgaaatttttgaaatccggctgcagttaactgcc 31151066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 362
Target Start/End: Original strand, 44596795 - 44596959
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||||||||||||||||| |||||   |||| || |||||||| ||||||||||   |  ||||||  |||||  ||||||||||||||||||| ||    
T  44596795 gagaattgttgttcccacattacataagactgtgccacacgagtaaatgacgtttttgcccgctcggcagttaactgccgaagttttagaaatccggttg 44596894  T
Q  298 cagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||| |||  ||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  44596895 cagttaactgctgagtatcttctgctacaaatttggcagaaactctctcatccattattcatctc 44596959  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 276 - 362
Target Start/End: Original strand, 49426725 - 49426812
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  |||| || |||||||||||||||||||||    
T  49426725 cgaagttttagaaatccggctgcaattaactgccgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctc 49426812  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 362
Target Start/End: Complemental strand, 27487775 - 27487615
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| ||||||||||||  |||| ||||||||| |||||||||| ||||||||   || |||||| ||  ||   |||   ||| || ||||||||    
T  27487775 gagaattgatgttcccacatttgataaggttgtggcacacgagtaatttacgtttttgctccctcggcagctg-ctgaggaa---ttaaaattccggctg 27487680  T
Q  298 cagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  27487679 cagttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 27487615  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 29765669 - 29765553
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    |||||||||||||||||||||||||||| |||||  || |||| ||| ||||||||||   || ||||||  |||||  ||||||||||||||||||| |    
T  29765669 tgagaattgttgttcccacattgcataaggttgtaccacacgaataaatgacgtttttgtcccctcggcagttaactgccgaagttttagaaatccggtt 29765570  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||||||||||    
T  29765569 gcagttaactgccgagg 29765553  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 51271732 - 51271615
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    ||||||||||||||||||| ||| ||||| |||||| || ||| |||| ||||||||||   || ||||||  |||||  ||||||||||||||||||||    
T  51271732 ttgagaattgttgttcccaaattacataaggttgtgccacacgggtaaatgacgtttttgccccctcggcagttaactgccgaagttttagaaatccggc 51271633  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||| ||||||||    
T  51271632 tgcagttaattgccgagg 51271615  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 292 - 362
Target Start/End: Complemental strand, 14174930 - 14174860
Alignment:
Q  292 cggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||||||||||| |||||||||| |||||||  |||| |||||||||||||||||||||||    
T  14174930 cggctgcagttaactgccgaggatcttctgctaaaaatctggcagaagctctctcatccattattcatctc 14174860  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 29763231 - 29763168
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  29763231 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 29763168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 42572769 - 42572706
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  42572769 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 42572706  T

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Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 298 - 362
Target Start/End: Original strand, 13147556 - 13147620
Alignment:
Q  298 cagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||| ||| | |||||||||||||||||| || ||||||||||||||||||||||||||    
T  13147556 cagttaactgtcgatgatcttctgctacaaatctggtaaaaactctctcatccattattcatctc 13147620  T

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Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 6434809 - 6434872
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||| ||| |||||||||||||||||| ||||| | |||||||||||||||||||||    
T  6434809 agttaactgccaaggatcttctgctacaaatctggtagaagcactctcatccattattcatctc 6434872  T

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Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 49927513 - 49927451
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    |||||||| |||||| ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  49927513 agttaactaccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 49927451  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 26944411 - 26944523
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    ||||||||||||||||||||||| ||||| | |||| || |||||||| ||||||||||   ||| |||||  |||||||||||||||  |||  |||||    
T  26944411 ttgagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctacggcagttaactatcgaagtttg-gaa--ccggc 26944507  T
Q  296 tgcagttaactgccga 311  Q
    ||||||||||| ||||    
T  26944508 tgcagttaactcccga 26944523  T

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Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 46886527 - 46886411
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||||||||  ||||||  |||| ||||||  | |||||||| ||||||||||   || ||||||  |||||  |||||||||||||||||||||    
T  46886527 tgagaattgttgtttacacatttgataaggttgtgctacacgagtaaatgacgtttttgccccctcggcagttaactgccgaagttttagaaatccggct 46886428  T
Q  297 gcagttaactgccgagg 313  Q
    | |||||| ||||||||    
T  46886427 gtagttaagtgccgagg 46886411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 44599045 - 44598930
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||| |||||||| ||||  |||||| || |||||||| |||| |||||   |  ||||||  || || ||||| |||||| ||||||||||    
T  44599045 gagaattgttgtacccacattacatagggttgtgccacacgagtaaatgacatttttgccctctcggcagttacctgtcgaaattttagtaatccggctg 44598946  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  44598945 cagttaactgccgagg 44598930  T

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Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 26637259 - 26637205
Alignment:
Q  308 ccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  26637259 ccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 26637205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 191 - 313
Target Start/End: Original strand, 49924783 - 49924905
Alignment:
Q  191 tcatgttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaat 290  Q
    |||| |||||||||||||||  |||||||||||| | || |||| |||||||||| ||||||||   |||||||||| |||||  ||||   ||  |||     
T  49924783 tcattttgagaattgttgttgacacattgcataaggctgaggcacacgagtaatttacgtttttgccccttcggcaattaactgccgaaaaattcaaaaa 49924882  T
Q  291 ccggctgcagttaactgccgagg 313  Q
    |||||| ||||||||||||||||    
T  49924883 ccggctacagttaactgccgagg 49924905  T

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Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 19161904 - 19161941
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19161904 cgaagttttagaaatccggctgcagttaactgccgagg 19161941  T

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Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 29438161 - 29438044
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||||||||||||||||  |||| ||||||||| |||| ||||| ||||||||   || ||||||  |||||   ||| | ||| ||| |||||    
T  29438161 ttgagaattgttgttcccacatttgataaggttgtggcacacgaataatttacgtttttgccccctcggcagttaactgcagaaatattaaaaaaccggc 29438062  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||||| ||||||    
T  29438061 tgcagttaactaccgagg 29438044  T

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Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 316
Target Start/End: Complemental strand, 46320594 - 46320477
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||| |||||||||||| ||||| |||||| || |||||||| ||||||||||   ||| ||| |  |||||| ||||||||  |||| |||||    
T  46320594 ttgagaattgctgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgcccctgcggtagttaactaccgaagttt--gaaa-ccggc 46320498  T
Q  296 tgcagttaactgccgagggtc 316  Q
    ||||||||||| |||| ||||    
T  46320497 tgcagttaactaccgaaggtc 46320477  T

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Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 94343 - 94458
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||||||||  ||||||  |||| | |||| || | |||||| ||||||||||   |||||||||  |||||  ||||||||||||||||| |||    
T  94343 tgagaattgttgtttacacatttgataaggctgtgccacatgagtaaatgacgtttttgc-ccttcggcagttaactgccgaagttttagaaatccagct 94441  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||| ||||||    
T  94442 gcagttaactaccgagg 94458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 586684 - 586629
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  ||||||||||||||| ||||||||||||||||||||||    
T  586684 ccttcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgagg 586629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 13972131 - 13972186
Alignment:
Q  307 gccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||| ||||||||||||||||||  |||| |||||||||| ||||||||||||    
T  13972131 gccgaggatcttctgctacaaatctggcagaagctctctcatctattattcatctc 13972186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 30194415 - 30194470
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  ||||||||||||||| ||||||||||||||||||||||    
T  30194415 ccttcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgagg 30194470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 15354698 - 15354640
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttta 255  Q
    ||||||||| |||||||||||| ||||| |||||| || |||||||| |||||||||||    
T  15354698 tgagaattgctgttcccacattacataaggttgtgtcacacgagtaaatgacgttttta 15354640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 32161431 - 32161321
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||||||||||||||||| ||||| | |||| || |||||||| ||||||||||   ||| |||||  |||||| ||||||||  |||  |||||||    
T  32161431 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgtttttgcccctgcggcagttaactaccgaagtttg-gaa--ccggctg 32161335  T
Q  298 cagttaactgccga 311  Q
    ||||||||| ||||    
T  32161334 cagttaactaccga 32161321  T

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Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 49395664 - 49395714
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatc 349  Q
    ||||||||||||||| ||||||||||||||||||  |||| ||||||||||    
T  49395664 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatc 49395714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 49661795 - 49661757
Alignment:
Q  275 tcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  49661795 tcgaagttttagaaatacggctgcagttaactgccgagg 49661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 4883245 - 4883282
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  4883245 cgaagttttagaaatacggctgcagttaactgccgagg 4883282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 19914478 - 19914515
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  19914478 cgaagttttagaaatacggctgcagttaactgccgagg 19914515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 311
Target Start/End: Complemental strand, 48228381 - 48228328
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccga 311  Q
    |||||||||  |||||  |||||||||||||||| |||||||||||||||||||    
T  48228381 ccttcggcagttaactgccgaagttttagaaatctggctgcagttaactgccga 48228328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 2425824 - 2425709
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||||||||||||||||||  || |  ||| || |||||||| | ||  |||||  ||| |||||  |||||  ||||||||| |||||||||||    
T  2425824 tgagaattgttgttcccacattgcggaaggccgtgacacacgagtaaataacccttttacccct-cggcagttaactgccgaagttttggaaatccggct 2425726  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||||| ||||    
T  2425725 gcagttaactgctgagg 2425709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 20114539 - 20114595
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||||||||||||||||| ||||| | |||| || |||||||| ||||||||||    
T  20114539 gagaattgttgttcccacattacataaggctgtgccacacgagtaaatgacgttttt 20114595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 37014882 - 37014929
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaa 243  Q
    |||||||||||||||||||||||  |||||||||||||| || |||||    
T  37014882 ttgagaattgttgttcccacatttgataatgttgtggcacactagtaa 37014929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 51288821 - 51288936
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| | ||||||||||  |||| | ||||||| |||| ||||| | ||||||   || ||||||  |||||| ||| |  |||||||||||||||    
T  51288821 gagaattgctattcccacatttgataaggctgtggcacacgaataatttatgtttttgccccctcggcagttaactaccgaggaattagaaatccggctg 51288920  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||| ||||    
T  51288921 cagttaactgcggagg 51288936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Original strand, 9710597 - 9710627
Alignment:
Q  283 ttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||||||||||||||||||||    
T  9710597 ttagaaatccggctgcagttaactgccgagg 9710627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 21144745 - 21144687
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||||||||||||  |||| ||| ||||| |||| ||||| ||||||||    
T  21144745 ttgagaattgttgttcccacatttgataaggttctggcacacgactaatttacgttttt 21144687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 49429213 - 49429159
Alignment:
Q  259 cttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||  |||||  ||||||||||||||||||||||||||||  ||||||||    
T  49429213 cttcggcagttaactgccgaagttttagaaatccggctgcagttagttgccgagg 49429159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 50117954 - 50117896
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||| |||||||||||| ||||| |||||| || |||||||| |||| |||||    
T  50117954 ttgagaattgctgttcccacattacataaggttgtgccacacgagtaaatgacattttt 50117896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 253421 - 253360
Alignment:
Q  193 atgttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||||||||||||||| | ||| | |||| || |||||||| |||| |||||    
T  253421 atgttgagaattgttgttcccacattacgtaaggctgtgccacacgagtaaatgacattttt 253360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 471203 - 471146
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||||||||||| ||||| |||||| ||  || |||| ||||||||||    
T  471203 tgagaattgttgttcccacattacataaggttgtgccacgcgggtaaatgacgttttt 471146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 44465528 - 44465645
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    ||||||||||||||||||||||   |||| |||||| ||||| |||||   ||| |||||  || ||||||  |||||| ||| |  || ||| ||||||    
T  44465528 ttgagaattgttgttcccacatgtgataaggttgtgccatactagtaaaatacgattttaccccctcggcagttaactaccgaggaatttgaattccggc 44465627  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||| ||||||||||    
T  44465628 tgcagtttactgccgagg 44465645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 253028 - 253084
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||| |||||||||||| ||||| | |||| || |||||||| ||||||||||    
T  253028 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgttttt 253084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 4208458 - 4208502
Alignment:
Q  315 tcttctgctacaaatctgatagaaactctctcatccattattcat 359  Q
    |||||||||||||||||   |||| ||||||||||||||||||||    
T  4208458 tcttctgctacaaatctaccagaagctctctcatccattattcat 4208502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 30905793 - 30905821
Alignment:
Q  286 gaaatccggctgcagttaactgccgaggg 314  Q
    |||||||||||||||||||||||||||||    
T  30905793 gaaatccggctgcagttaactgccgaggg 30905821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 46319684 - 46319740
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||||||||||||||||| ||||  | |||| || |||||||| ||||||||||    
T  46319684 gagaattgttgttcccacattacatatggctgtgccacacgagtaaatgacgttttt 46319740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 258 - 362
Target Start/End: Complemental strand, 34530848 - 34530744
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattc 357  Q
    |||||||||  ||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||  |||| ||||||||||||||||||    
T  34530848 ccttcggcagttaactgtcgaagttttagaaatctggctgcagttaactgccgaggatcttctgctacaaatttggcagaagctctctcatccattattc 34530749  T
Q  358 atctc 362  Q
    |||||    
T  34530748 atctc 34530744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 192 - 362
Target Start/End: Original strand, 39588020 - 39588190
Alignment:
Q  192 catgttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatc 291  Q
    |||| ||||||||||||||| || ||||||||| | |||| || |||||||| ||||||||||   || ||||||  |||||  ||| |  ||||||||     
T  39588020 catgctgagaattgttgttctcatattgcataaggatgtgtcacacgagtaaatgacgtttttgccccctcggcagttaactgccgaggaattagaaatt 39588119  T
Q  292 cggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    || ||||||||||||||||||| ||||||||||||||| ||  |||| |||||||||||||||||||||||    
T  39588120 cgactgcagttaactgccgaggatcttctgctacaaatatggcagaagctctctcatccattattcatctc 39588190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 49889616 - 49889732
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||    | ||||||  ||||| ||||||||||||||||| || |    
T  49889616 tgagaattgtcgttcccacattgcataaggttgtggcatacgagtaattgatatttttgtctcctcggcagttaactgtcgaagttttagaaatctggtt 49889715  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||||||||||    
T  49889716 gcagttaactgccgagg 49889732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 51492006 - 51492116
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||||||||||||||||| ||||| |||||| || |||||||| ||||||||||    || |||||| ||||| |||||||||||||||||||||||    
T  51492006 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgcttct-cggcaattaactgtcgaagttttagaaatccggctg 51492104  T
Q  298 cagttaactgcc 309  Q
    ||||||||||||    
T  51492105 cagttaactgcc 51492116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 44674099 - 44674213
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||||||||||||||||| ||||| |||||| || |||||||| ||||||||||   |||| ||||  |||||  |||||||| ||||| |||||||    
T  44674099 gagaattgttgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgcccctt-ggcagttaactgccgaagtttaagaaacccggctg 44674197  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  44674198 cagttaactgccgagg 44674213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 50278937 - 50278822
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||||||  |||| ||||||||| |||||||||| ||||||||   || ||| ||  ||||| |||| |  |||||||||||||||    
T  50278937 gagaattgttgttcccacatttgataaggttgtggcacacgagtaatttacgtttttgtcccctcgacagttaactgtcgatgaattagaaatccggctg 50278838  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  50278837 cagttaactgccgagg 50278822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 51429349 - 51429278
Alignment:
Q  291 ccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||||| ||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  51429349 ccggctgcagttaactgtcgaggatcttctgctacaaatctggaagaagctctctcatccattattcatctc 51429278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 16984302 - 16984185
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||| ||||  ||||||  |||| | |||| || |||||||| |||||||||||  || ||||||  |||||  ||||||||||||||||||||    
T  16984302 ttgagaattgctgtttacacatttgataaggctgtgccacacgagtaaatgacgtttttaccccctcggcagttaactgccgaagttttagaaatccggc 16984203  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||||||||||||    
T  16984202 tgcagttaactgccgagg 16984185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 291 - 362
Target Start/End: Complemental strand, 34154448 - 34154377
Alignment:
Q  291 ccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||||||| |||| ||||||||||||||||||  |||| |||||||||| ||||||||||||    
T  34154448 ccggctgcagttaactgcagaggatcttctgctacaaatctggcagaagctctctcatctattattcatctc 34154377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 56138313 - 56138376
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  56138313 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 56138376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 287 - 362
Target Start/End: Original strand, 56304899 - 56304974
Alignment:
Q  287 aaatccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||| |||||||||||| |||||||| | ||||||||||||||||  |||| |||||||||||||||||||||||    
T  56304899 aaatctggctgcagttaattgccgaggattttctgctacaaatctggcagaagctctctcatccattattcatctc 56304974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 6283487 - 6283417
Alignment:
Q  291 ccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||||||||||| ||||||||| ||||||||   ||| ||||||||||||||||||||||    
T  6283487 ccggctgcagttaactgccgaggatcttctgcttcaaatctggccgaagctctctcatccattattcatct 6283417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 16983456 - 16983570
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||  ||||||  |||| | |||| || |||||||| |||||||||||  || ||||||  |||||  |||||||||||||||||||||     
T  16983456 gagaattgttgtttacacatttgataaggctgtgccacacgagtaaatgacgtttttaccccctcggcagttaactgccgaagttttagaaatccggcta 16983555  T
Q  298 cagttaactgccgag 312  Q
    |||||||||||||||    
T  16983556 cagttaactgccgag 16983570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 313
Target Start/End: Original strand, 50274693 - 50274809
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||||||||||||||||  |||  | ||||||| |||||||||| ||||||||   || ||||||  |||||  ||| |  ||||||||||||||    
T  50274693 tgagaattgttgttcccacatttgatagggctgtggcacacgagtaatttacgtttttgccccctcggcagttaactgccgaggaattagaaatccggct 50274792  T
Q  297 gcagttaactgccgagg 313  Q
    |||||||||||||||||    
T  50274793 gcagttaactgccgagg 50274809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 44561342 - 44561279
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| || |||||||||||||||  |||| |||||||||||||||||||||||    
T  44561342 agttaactgccgaggatcgtctgctacaaatctggcagaagctctctcatccattattcatctc 44561279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 4980058 - 4979941
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||||||||  |||||||||||| |||| |||| |||||||||| ||||||||   || ||||||  ||||| |||| | |||  ||| |||||    
T  4980058 ttgagaattgttgttgacacattgcataaggttgaggcacacgagtaatttacgtttttcctccctcggcagttaactgtcgacgatttcaaaaaccggc 4979959  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||||||| ||||    
T  4979958 tgcagttaactgctgagg 4979941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 958606 - 958543
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| |||||||||||||||| |  |||| |||||||||||||||||| ||||    
T  958606 agttaactgccgaggatcttctgctacaaatccggcagaagctctctcatccattattcttctc 958543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 39590709 - 39590592
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||| |||| |||||||  |||| | |||| || |||||||| ||| ||||||   || ||||||  |||||  ||||||||||||||| | ||    
T  39590709 ttgagaattgctgtttccacattatataaggctgtgccacacgagtaaatgatgtttttgccccctcggcagttaactgccgaagttttagaaatacagc 39590610  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||||||||||||    
T  39590609 tgcagttaactgccgagg 39590592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 14200566 - 14200610
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  14200566 taactgtcgaagttttagaaatacggctgcagttaactgccgagg 14200610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 42885508 - 42885575
Alignment:
Q  297 gcagttaactgccgagggtcttctgctacaaa--tctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| | ||||||||||||||  ||||  |||| |||||||||||||||||||||||    
T  42885508 gcagttaactgccgatgatcttctgctacaaaaatctggcagaagctctctcatccattattcatctc 42885575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 28081452 - 28081507
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  |||||||||||||||||| |||||||||||||||||||    
T  28081452 ccttcggcagttaactgccgaagttttagaaatccgactgcagttaactgccgagg 28081507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 38369261 - 38369206
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  ||||||||||||||| ||||||||||||||||||||||    
T  38369261 ccttcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgagg 38369206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 4786345 - 4786296
Alignment:
Q  300 gttaactgccgagggtcttctgctacaaatctgatagaaactctctcatc 349  Q
    |||||||||||| | |||||||||||||||||| ||||| ||||||||||    
T  4786345 gttaactgccgatgatcttctgctacaaatctggtagaagctctctcatc 4786296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 6280790 - 6280847
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||||||||||  |||||||||||| |||| |||| |||||||||| ||||||||    
T  6280790 tgagaattgttgttgacacattgcataaggttggggcacacgagtaatttacgttttt 6280847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 21022949 - 21022912
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  21022949 cgaagttttagaaatacggctgcagttaactgccgagg 21022912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 28084051 - 28084014
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  28084051 cgaagttttagaaatccagctgcagttaactgccgagg 28084014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 40833671 - 40833634
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  40833671 cgaagttttagaaatacggctgcagttaactgccgagg 40833634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 46254509 - 46254472
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  46254509 cgaagttttagaaatacggctgcagttaactgccgagg 46254472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 7485729 - 7485685
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||||||| |||||||| |||||||||||||    
T  7485729 taactgtcgaagttttagaaatacggctgcaattaactgccgagg 7485685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 28320488 - 28320540
Alignment:
Q  193 atgttgagaattgttgttcccacattgcataatgttgtggcatacgagtaatt 245  Q
    ||||||||||||||||||  |||||||||||| |||||| || ||||||||||    
T  28320488 atgttgagaattgttgttgacacattgcataaggttgtgtcacacgagtaatt 28320540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 243359 - 243296
Alignment:
Q  297 gcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatc 360  Q
    ||||||||||| ||||| ||||||| ||||||||||  |||| ||||||||  |||||||||||    
T  243359 gcagttaactgtcgaggatcttctgttacaaatctggcagaagctctctcactcattattcatc 243296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 276 - 311
Target Start/End: Original strand, 23220690 - 23220725
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccga 311  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23220690 cgaagttttagaaatacggctgcagttaactgccga 23220725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 28081519 - 28081582
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatct 361  Q
    |||||| || ||||| ||||||||||||||||||  |||| || ||||||||||||||||||||    
T  28081519 agttaagtgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatct 28081582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Original strand, 51036514 - 51036552
Alignment:
Q  275 tcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  51036514 tcgaagttttagaaatacggctgtagttaactgccgagg 51036552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 314
Target Start/End: Original strand, 21015744 - 21015789
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgaggg 314  Q
    ||||| |||||||||||||||| ||| ||||||||||||| |||||    
T  21015744 taactgtcgaagttttagaaatacgggtgcagttaactgctgaggg 21015789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 51037529 - 51037492
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  51037529 cgaagttttagaaatacggctgcaattaactgccgagg 51037492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 1041996 - 1042056
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcat 359  Q
    ||||||||||||||| |||||| |||||||||||  | || ||||||||| |||| |||||    
T  1041996 agttaactgccgaggatcttctactacaaatctggcataagctctctcattcattgttcat 1042056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 37865200 - 37865232
Alignment:
Q  296 tgcagttaactgccgagggtcttctgctacaaa 328  Q
    |||||||||||||||||| ||||||||||||||    
T  37865200 tgcagttaactgccgaggatcttctgctacaaa 37865232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 56565762 - 56565806
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||| || ||||| |||||||||||||||||    
T  56565762 taactgtcgaagttttagtaaaccggcggcagttaactgccgagg 56565806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 41250210 - 41250096
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||   || |||| |  ||||| ||||||||||||||||||| |||    
T  41250210 gagaattgttgttcccacattgcataaggttgtggcacacgagtaattgacgttttt-gcccctcggtagttaactgtcgaagttttagaaatccgactg 41250112  T
Q  298 cagttaactgccgagg 313  Q
    ||||| ||||||||||    
T  41250111 cagtttactgccgagg 41250096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 258 - 362
Target Start/End: Original strand, 22547463 - 22547567
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattc 357  Q
    |||||||||  |||||  ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||  |||| |||||||||| |||||||    
T  22547463 ccttcggcagttaactgccgaagttttagaaatccggctgcagttaactaccgaggatcttctactacaaatctggcagaagctctctcatcaattattc 22547562  T
Q  358 atctc 362  Q
    |||||    
T  22547563 atctc 22547567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 18441455 - 18441390
Alignment:
Q  297 gcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  18441455 gcagttaactgccgaggatcttctgctacaaatctggcagaaactctctcatccattattcatctc 18441390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 3395924 - 3395990
Alignment:
Q  296 tgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||||||||    
T  3395924 tgcagttaactgccgaggatcttctgctacaaatatggcagaaactctctcatccattattcatctc 3395990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 309
Target Start/End: Complemental strand, 39939354 - 39939243
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    ||||||| ||||||||||||| ||||| | |||| || |||||||| ||||||||||   || ||| ||  ||| | |||||||||||||||||||||||    
T  39939354 gagaattattgttcccacattacataaggatgtgtcacacgagtaaatgacgtttttgctccctcgacagttaattgtcgaagttttagaaatccggctg 39939255  T
Q  298 cagttaactgcc 309  Q
    ||||||||||||    
T  39939254 cagttaactgcc 39939243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 196 - 313
Target Start/End: Original strand, 39601636 - 39601753
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||| | |||||||||| ||||| | |||| || |||||||| |||||||||||     ||| ||  |||||  ||||||||||||||||||||    
T  39601636 ttgagaattgctattcccacattacataaggctgtgccacacgagtaaatgacgtttttaccttctcgacagttaactgccgaagttttagaaatccggc 39601735  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||||||||||||    
T  39601736 tgcagttaactgccgagg 39601753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 7577727 - 7577617
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| ||||| | |||| || |||||||| |||||||||||  ||| |||||| |||||| ||||||||  |||| |||||||    
T  7577727 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttacccctgcggcaattaactaccgaagttt--gaaa-ccggctg 7577631  T
Q  298 cagttaactgccga 311  Q
    ||||||||| ||||    
T  7577630 cagttaactaccga 7577617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 41858135 - 41858073
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||| ||||| ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  41858135 agttaactgtcgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 41858073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 299 - 359
Target Start/End: Original strand, 26451541 - 26451601
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcat 359  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||| |||||||||    
T  26451541 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatctattattcat 26451601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 44052365 - 44052309
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||    
T  44052365 gagaattgttgttcccacattacataaggttgtggcacacgagtaaatgacgttttt 44052309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 22550944 - 22550889
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  ||||||||||||||||||||||||||||||||||||||    
T  22550944 ccttcggcagttaactgccgaagttttagaaatccggctgcagttaactgccgagg 22550889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 293 - 361
Target Start/End: Original strand, 37779707 - 37779773
Alignment:
Q  293 ggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||| ||||| | ||||||||||||||||| ||||   ||||||||||||||||||||    
T  37779707 ggctgcagttaactgtcgaggatattctgctacaaatctgacagaa--gctctcatccattattcatct 37779773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 2335216 - 2335172
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  2335216 taactaccgaagttttagaaatacggctgcagttaactgccgagg 2335172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 27501605 - 27501649
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||    
T  27501605 taactaccgaagttttagaaatacggctgcagttaactgccgagg 27501649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 32584057 - 32584101
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  32584057 taactgtcgaagttttagaaatacggctgcagttaactgccgagg 32584101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 44050749 - 44050805
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||| |||||||||||||||||| | ||||||| |||||||||||| ||||||    
T  44050749 gagaattgctgttcccacattgcataaggctgtggcacacgagtaattgatgttttt 44050805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 313
Target Start/End: Original strand, 28617562 - 28617617
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  ||||||||||||||| ||||||||||||||||||||||    
T  28617562 ccttcggcagttaactgccgaagttttagaaatacggctgcagttaactgccgagg 28617617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 41274653 - 41274716
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||  |||||| ||| |||||||  |||| |||||||||||||||||||||||    
T  41274653 agttaactgccgagaatcttctactataaatctggcagaagctctctcatccattattcatctc 41274716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 361
Target Start/End: Original strand, 42602521 - 42602583
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||| ||||||| ||||||||||| | ||  | |||||||||||||||||||    
T  42602521 agttaactgccgaggatcttctgatacaaatctgacataagttgtctcatccattattcatct 42602583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 43262359 - 43262470
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||| |||||| ||||| | |||| || |||||||| |||||||||||  || |||||    ||||  ||| || || ||||||| ||||    
T  43262359 gagaattgttgttctcacattacataaggctgtgccacacgagtaaatgacgtttttaccccctcggc----aacttccgaggtatttgaaatccagctg 43262454  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  43262455 cagttaactgccgagg 43262470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 5533086 - 5533049
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  5533086 cgaagttttagaaatacggctgcagttaactgccgagg 5533049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 26451414 - 26451467
Alignment:
Q  192 catgttgagaattgttgttcccacattgcataatgttgtggcatacgagtaatt 245  Q
    |||||||||||||||| ||||||||||  |||| ||||||||| ||||||||||    
T  26451414 catgttgagaattgttcttcccacatttgataaggttgtggcacacgagtaatt 26451467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 38604309 - 38604272
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  38604309 cgaagttttagaaatacggctgcagttaactgccgagg 38604272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 39604459 - 39604402
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||||||||| |||||||| ||||| | |||| || |||||||||||||||||||    
T  39604459 tgagaattgttgtccccacattacataaggctgtgccacacgagtaattgacgttttt 39604402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 44933871 - 44933908
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  44933871 cgaagttttagaaatacggctgcagttaactgccgagg 44933908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 41016419 - 41016463
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||| |||||||||||||||||  |||||||||||||||||||    
T  41016419 taactaccgaagttttagaaatccaactgcagttaactgccgagg 41016463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 34366846 - 34366960
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| ||||| | |||| || ||||||||  ||| |||||   ||| || ||  |||||  |||||||||| |||||||||||    
T  34366846 gagaattgatgttcccacattacataaggctgtgccacacgagtaaaagacctttttgcccct-cgtcagttaactgccgaagttttataaatccggctg 34366944  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||| ||||||    
T  34366945 cagttaacttccgagg 34366960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 362
Target Start/End: Original strand, 24860448 - 24860506
Alignment:
Q  304 actgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||| |||| |||||||||| |||| ||| |||| |||||||||| ||||||||||||    
T  24860448 actgcggaggatcttctgctataaatttgacagaagctctctcatctattattcatctc 24860506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 27704669 - 27704559
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| ||||| | |||| || |||| ||| |||||||||||  ||| | |||  |||||| ||||||||  |||| |||||||    
T  27704669 gagaattgctgttcccacattacataaggctgtgccacacgaataaatgacgtttttacccctgcagcagttaactaccgaagttt--gaaa-ccggctg 27704573  T
Q  298 cagttaactgccga 311  Q
    ||||||||| ||||    
T  27704572 cagttaactaccga 27704559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 313
Target Start/End: Complemental strand, 34235264 - 34235147
Alignment:
Q  195 gttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccgg 294  Q
    ||||||||||| ||||  ||||||  |||| | |||| ||||||||||| |||||||||||     ||||||  |||||  ||||||||||||||| |||    
T  34235264 gttgagaattgctgtttacacatttgataaggctgtg-catacgagtaaatgacgtttttacctactcggcagttaactgccgaagttttagaaattcgg 34235166  T
Q  295 ctgcagttaactgccgagg 313  Q
    || ||||||||||| ||||    
T  34235165 ctacagttaactgctgagg 34235147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 38871831 - 38871884
Alignment:
Q  296 tgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatc 349  Q
    |||||||||||||| ||| ||||||||||||||||||  || | ||||||||||    
T  38871831 tgcagttaactgccaaggatcttctgctacaaatctggcaggagctctctcatc 38871884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 43363321 - 43363284
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  43363321 cgaagttttagaaatacggctgcagttaactaccgagg 43363284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 35389442 - 35389498
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||  |||||||||||| | || | ||||||||||||| ||||||||    
T  35389442 gagaattgttgttgacacattgcataaggctgagacatacgagtaatttacgttttt 35389498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 44841935 - 44841899
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgag 312  Q
    ||||||||||||||| ||| |||||||||||||||||    
T  44841935 cgaagttttagaaatacggttgcagttaactgccgag 44841899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 19041434 - 19041271
Alignment:
Q  1 tgtgtttgttgttgtggtggtgacatataagcannnnnnnctcttatacgtgtcaccaacttaaaagagacaacaccaccatggtacnnnnnnngaggtt 100  Q
    ||||||||| ||||||||||||||| |||||||       ||||||||||||||||||||||||||||||||||||||   ||||||       ||| ||    
T  19041434 tgtgtttgtggttgtggtggtgacaaataagcatttttt-ctcttatacgtgtcaccaacttaaaagagacaacacca---tggtactttttttgagttt 19041339  T
Q  101 caaaagcgcgccttctcaagcttttcaccgtccacggtctatccacccacatttacttaccatcgatttttt 172  Q
    |||||||||||||||||||||||||     |  || ||| ||||||||||||||||||||||| | ||||||    
T  19041338 caaaagcgcgccttctcaagctttt----ttttaccgtccatccacccacatttacttaccattgttttttt 19041271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 13568216 - 13568099
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    ||||||||||||||||||||||| ||||| | |||| ||||||||||| |||||||||||  || |||| |  |||||  ||| |  || ||||||||||    
T  13568216 ttgagaattgttgttcccacattacataaggctgtgccatacgagtaaatgacgtttttaccccatcggtagttaactgccgaggaatttgaaatccggc 13568117  T
Q  296 tgcagttaactgccgagg 313  Q
    ||||||||||||||||||    
T  13568116 tgcagttaactgccgagg 13568099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 291 - 361
Target Start/End: Complemental strand, 42865824 - 42865754
Alignment:
Q  291 ccggctgcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    |||| ||||||||| |||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||    
T  42865824 ccggttgcagttaattgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatct 42865754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 542802 - 542739
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  ||||  ||||||||||||||||||||||    
T  542802 agttaactgccgaggatcttctgctacaaatctggcagaagttctctcatccattattcatctc 542739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 313
Target Start/End: Original strand, 7757259 - 7757374
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| |||||   | || || |||||||| ||||||||||   || ||| ||  |||||  ||||||||||||||||||||||    
T  7757259 gagaattgctgttcccacattacataagactatgccacacgagtaaatgacgtttttgccccctcgacagttaactgccgaagttttagaaatccggctg 7757358  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  7757359 cagttaactgccgagg 7757374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 7762382 - 7762268
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| ||||| | |||| || |||||||||||||||||||   || ||||||  |||||  ||||||||||||||| ||| ||    
T  7762382 gagaattgctgttcccacattacataaggctgtgccacacgagtaattgacgttttt-gcccctcggcagttaactgccgaagttttagaaattcggttg 7762284  T
Q  298 cagttaactgccgagg 313  Q
    |||||||||| |||||    
T  7762283 cagttaactgtcgagg 7762268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 18307315 - 18307378
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| | |||||||||||||||||||||    
T  18307315 agttaactgccgaggatcttctgctacaaatctggcagaagccctctcatccattattcatctc 18307378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 43094715 - 43094600
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| ||||  ||||||  |||| ||| || || |||||||| |||||||||||  || ||| ||  |||||  ||||||||||||||||||||||    
T  43094715 gagaattgctgtttacacatttgataaggttatgccacacgagtaaatgacgtttttaccccatcgacagttaactgccgaagttttagaaatccggctg 43094616  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  43094615 cagttaactgccgagg 43094600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 25497572 - 25497635
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||  |||||||||||||||| |  |||| |||||||||||||||||||||||    
T  25497572 agttaactgccgagaatcttctgctacaaatcaggcagaagctctctcatccattattcatctc 25497635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 194 - 309
Target Start/End: Original strand, 43093938 - 43094053
Alignment:
Q  194 tgttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccg 293  Q
    |||||||||||||||||  || |||  |||| | |||| || |||||||| |||||||||||  |||||  ||  |||||  |||| |||||||||||||    
T  43093938 tgttgagaattgttgtttacatatttgataaggctgtgtcacacgagtaaatgacgtttttaccccttcaacagttaactgccgaaattttagaaatccg 43094037  T
Q  294 gctgcagttaactgcc 309  Q
    ||||||||||||||||    
T  43094038 gctgcagttaactgcc 43094053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 311
Target Start/End: Complemental strand, 1397486 - 1397376
Alignment:
Q  201 aattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctgcag 300  Q
    ||||||||||||||||||  |||| ||||||||| |||||||||| || |||||   || ||||||  |||||   || |  ||||||||||||||||||    
T  1397486 aattgttgttcccacatttgataaggttgtggcacacgagtaatttacatttttgccccctcggcagttaactgctgaggaattagaaatccggctgcag 1397387  T
Q  301 ttaactgccga 311  Q
    |||||||||||    
T  1397386 ttaactgccga 1397376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 8539577 - 8539540
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||||||||||||||||||||||||    
T  8539577 cgaagttttagaaatccggctgcagttaactgccgagg 8539540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 8537226 - 8537290
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    ||||||||||||||| | ||||||||||||||||  |||| || |||||||||||||||||||||    
T  8537226 agttaactgccgaggatgttctgctacaaatctgccagaatctcctctcatccattattcatctc 8537290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 11346068 - 11346132
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    ||||||||| ||||| ||||||||||||||||||  |||| || |||||||||||||||||||||    
T  11346068 agttaactgtcgaggatcttctgctacaaatctggcagaatctcctctcatccattattcatctc 11346132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 38407133 - 38407189
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||||||||||  |||| ||||||||| |||||||||| ||||||||    
T  38407133 gagaattgttgttcccacatttgataaggttgtggcacacgagtaatttacgttttt 38407189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 3600398 - 3600461
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||| ||||||| ||||||||||||||||||| ||||  ||| |||| |||||||||||||    
T  3600398 agttaacagccgaggatcttctgctacaaatctgacagaagttctttcatgcattattcatctc 3600461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 30887502 - 30887443
Alignment:
Q  195 gttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||| ||||||||||||||||||  |||| ||||||||| |||||||||| ||||||||    
T  30887502 gttgataattgttgttcccacatttgataacgttgtggcacacgagtaatttacgttttt 30887443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 358
Target Start/End: Original strand, 35564322 - 35564381
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattca 358  Q
    |||||||||| |||| ||||||||||||||||||  | || |||||||||||||||||||    
T  35564322 agttaactgctgaggatcttctgctacaaatctggcataagctctctcatccattattca 35564381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 2532640 - 2532530
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| ||||| | |||| || |||||||| |||||||||||  ||| ||| || |||||| ||||||||  |||  |||||||    
T  2532640 gagaattgctgttcccacattacataaggctgtgccacacgagtaaatgacgtttttacccctgcggtaattaactaccgaagtttg-gaa--ccggctg 2532544  T
Q  298 cagttaactgccga 311  Q
    ||||||||| ||||    
T  2532543 cagttaactcccga 2532530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 3891495 - 3891532
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3891495 cgaagttttagaaatacggctgcagttaactgccgagg 3891532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 11346019 - 11346056
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11346019 cgaagttttagaaatccagctgcagttaactgccgagg 11346056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 11348536 - 11348499
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11348536 cgaagttttagaaatccggatgcagttaactgccgagg 11348499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 14742 - 14687
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  |||||  ||||||||||||||| |||||| |||||||||||||||    
T  14742 ccttcggcagttaactgccgaagttttagaaatacggctgtagttaactgccgagg 14687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 31788214 - 31788135
Alignment:
Q  234 atacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||| |||| ||||||  || ||| ||  ||||| ||||||||||||||||  | |||||||||||||||||||    
T  31788214 atacgagtaaatgacatttttactccctcgacagttaactgtcgaagttttagaaattagactgcagttaactgccgagg 31788135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 9784291 - 9784233
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    ||||||||||||||||||||||| ||||| |||||| || |||| ||| ||| ||||||    
T  9784291 ttgagaattgttgttcccacattacataaagttgtgtcacacgaataaatgatgttttt 9784233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 20192414 - 20192464
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatc 349  Q
    |||||| |||||||| ||||||||||||||||||  |||| ||||||||||    
T  20192414 agttaaatgccgaggatcttctgctacaaatctggcagaagctctctcatc 20192464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 30887414 - 30887384
Alignment:
Q  283 ttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||||||||||||||||||||||||    
T  30887414 ttagaaatccggctgcagttaactgccgagg 30887384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 283
Target Start/End: Original strand, 2532020 - 2532105
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttt 283  Q
    ||||||||||||||||||||| ||||| | |||| || || ||||| ||||||||||   ||| ||| |  |||||||||||||||    
T  2532020 gagaattgttgttcccacattacataaggctgtgccacacaagtaaatgacgtttttgctcctgcggtagttaactatcgaagttt 2532105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 311
Target Start/End: Original strand, 42937126 - 42937239
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||| |||||||| ||||||||||||| | || |||| || |||||   |||||||||  || |||||   |||||  |||||||| ||||| ||||| |    
T  42937126 gagagttgttgtttccacattgcataaggctgaggcacacaagtaaaatacgtttttatcccatcggcggttaactgccgaagtttaagaaaaccggcgg 42937225  T
Q  298 cagttaactgccga 311  Q
    ||||||||||||||    
T  42937226 cagttaactgccga 42937239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 2170623 - 2170579
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||| ||||| | | |||||||||||||||||||||||    
T  2170623 taactatcgaaattttaaagaaccggctgcagttaactgccgagg 2170579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 5200424 - 5200380
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||||||  ||||||||||||||| ||||||    
T  5200424 taactgtcgaagttttagaaaatcggctgcagttaactcccgagg 5200380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 35671079 - 35671131
Alignment:
Q  261 tcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||| ||||| ||||| ||||| | | |||||||||||||||||||||||    
T  35671079 tcggcaattaactgtcgaaattttaaagaaccggctgcagttaactgccgagg 35671131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 197 - 313
Target Start/End: Complemental strand, 43870261 - 43870145
Alignment:
Q  197 tgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggct 296  Q
    ||||||||| |||||||||||| ||||| |||||| || |||||||| ||||||||||   || ||||||  |||||  |||||||||||||||||| ||    
T  43870261 tgagaattgatgttcccacattacataaggttgtgccacacgagtaaatgacgtttttgccccatcggcagttaactgccgaagttttagaaatccgact 43870162  T
Q  297 gcagttaactgccgagg 313  Q
    ||||||| |||||||||    
T  43870161 gcagttagctgccgagg 43870145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 7190089 - 7189975
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| |||||||||||| ||||| |||||| || |||||||| | ||||||||   ||| |||||  |||||  ||||||||||||||||||||||    
T  7190089 gagaattgatgttcccacattacataaggttgtgccacacgagtaaattacgtttttgcccct-cggcagttaactgccgaagttttagaaatccggctg 7189991  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  7189990 cagttaactgccgagg 7189975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 2920528 - 2920465
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  2920528 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 2920465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 24512228 - 24512291
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  24512228 agttaactgccgaggatcttctgctacaaatctggcagaagctctctcatccattattcatctc 24512291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 39393098 - 39393161
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||| ||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  39393098 agttaactgtcgaggatcttctactacaaatctgatagaagctctctcatccattattcatctc 39393161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 198 - 312
Target Start/End: Complemental strand, 3943330 - 3943217
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||||||||||  |||| | | || || |||||||| ||||||||||   ||| |||||  |||||  ||||||||||||||||||||||    
T  3943330 gagaattgttgttcccacattagataaggctatgccacacgagtaaatgacgtttttgctcct-cggcagttaactgccgaagttttagaaatccggctg 3943232  T
Q  298 cagttaactgccgag 312  Q
    |||||||||||||||    
T  3943231 cagttaactgccgag 3943217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 300 - 362
Target Start/End: Complemental strand, 40679608 - 40679546
Alignment:
Q  300 gttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||| ||||||||||||||||||  |||| |||||||||||||||||||||||    
T  40679608 gttaactgccgaggatcttctgctacaaatctggaagaacctctctcatccattattcatctc 40679546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 23346715 - 23346825
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||  ||||||  |||| |||||| || |||||||| ||||||||||   |||||||||  |||||  |||||||||| |||||||||||    
T  23346715 gagaattgttgtttacacatttgataaggttgtgccacacgagtaaatgacgtttttgc-ccttcggcagttaactgccgaagttttataaatccggctg 23346813  T
Q  298 cagttaactgcc 309  Q
    ||||||||||||    
T  23346814 cagttaactgcc 23346825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 362
Target Start/End: Original strand, 26858175 - 26858237
Alignment:
Q  300 gttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||||||||||| ||||||||||||||| ||| ||||| ||||||||| ||||||||||||    
T  26858175 gttaactgccgaggatcttctgctacaaatgtgacagaaattctctcatcaattattcatctc 26858237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 361
Target Start/End: Complemental strand, 41500246 - 41500184
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatct 361  Q
    ||||||||||||||| ||||||||||||||||||  | || ||||||||||||||||||||||    
T  41500246 agttaactgccgaggatcttctgctacaaatctggcataagctctctcatccattattcatct 41500184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 2648178 - 2648241
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||| |||||| | ||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  2648178 agttaattgccgatgatcttctgctacaaatctggcagaaactctctcatcaattattcatctc 2648241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 23347466 - 23347352
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| ||||  ||||||  |||| | |||| || |||||||| ||||||||||   |||||||||  |||||  ||||||||||||||||||||||    
T  23347466 gagaattgctgtttacacatttgataaggctgtgccacacgagtaaatgacgtttttgc-ccttcggcagttaactgccgaagttttagaaatccggctg 23347368  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||| ||||||    
T  23347367 cagttaactaccgagg 23347352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 313
Target Start/End: Complemental strand, 10425887 - 10425843
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||    
T  10425887 taactgtcgaagttttagaaatacggctgcagttaactgccgagg 10425843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 29093842 - 29093780
Alignment:
Q  297 gcagttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||||||||   ||||||||||||    
T  29093842 gcagttaactgccgaggatcttctgctacaaatctggcagaagctctctca---attattcatctc 29093780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 43491170 - 43491233
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||||||||  ||||||| || |||||||  |||| |||||||||||||||||||||||    
T  43491170 agttaactgccgagaatcttctgttataaatctggcagaagctctctcatccattattcatctc 43491233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 28477128 - 28477091
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  28477128 cgaagttttagaaatacggctgcagttaactgccgagg 28477091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 30803079 - 30803042
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30803079 cgaagttttagaaatacggctgcagttaactgccgagg 30803042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 362
Target Start/End: Original strand, 34638201 - 34638261
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    |||||| || ||||| |||||||||||||||||   |||| |||||||||||||||||||||||    
T  34638201 agttaattgtcgaggatcttctgctacaaatct---agaagctctctcatccattattcatctc 34638261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 36510917 - 36510880
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36510917 cgaagttttagaaatacggctgcagttaactgccgagg 36510880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 313
Target Start/End: Complemental strand, 24607707 - 24607592
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||||||||  |||||||||||| | || |||| ||  |||||| ||||||||   || || |||  |||||  ||||| |||| ||| |||||||    
T  24607707 gagaattgttgttgacacattgcataaggctgaggcacacaggtaatttacgttttttccccctcagcagttaactgccgaagatttaaaaaaccggctg 24607608  T
Q  298 cagttaactgccgagg 313  Q
    ||||||||||||||||    
T  24607607 cagttaactgccgagg 24607592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 361
Target Start/End: Original strand, 28472136 - 28472214
Alignment:
Q  287 aaatccggctgcagttaactgccgagggtcttctg--ctac-aaatctgatagaaact-ctctcatccattattcatct 361  Q
    |||||||||||||||||||||| |||| |||||||  |||| |||||||  |||| || ||||||||||||||||||||    
T  28472136 aaatccggctgcagttaactgctgaggatcttctgcactacaaaatctggcagaatctcctctcatccattattcatct 28472214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 357
Target Start/End: Complemental strand, 10365804 - 10365746
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattc 357  Q
    |||||| |||||||| |||| |||||||||||||  | || ||||||||||||||||||    
T  10365804 agttaaatgccgaggatcttttgctacaaatctggcataagctctctcatccattattc 10365746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 245
Target Start/End: Complemental strand, 29093971 - 29093925
Alignment:
Q  199 agaattgttgttcccacattgcataatgttgtggcatacgagtaatt 245  Q
    |||||||||||||||||||| ||||| | ||||||| ||||||||||    
T  29093971 agaattgttgttcccacattacataaggctgtggcacacgagtaatt 29093925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 10424851 - 10424888
Alignment:
Q  276 cgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  10424851 cgaagttttagaaatacggctacagttaactgccgagg 10424888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 10825223 - 10825267
Alignment:
Q  269 taactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||| ||||||||||||||||||||||||  |||||| |||||    
T  10825223 taactaccgaagttttagaaatccggctgcacctaactgtcgagg 10825267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 28137791 - 28137847
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||| ||||||||||||  |||| |||||| || |||||||| ||||||||||    
T  28137791 gagaattgctgttcccacattatataaggttgtgccacacgagtaaatgacgttttt 28137847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 18434 - 18323
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||   ||||||||   |||||  |||||||||||||||||| |    
T  18434 ttgagaattgttgttcccacgttgcataaggatgtggcacacaagtaattgacgtttttgtcccttcggcggttaactgccgaagttttagaaatccgac 18335  T
Q  296 tgcagttaactg 307  Q
    ||||||| ||||    
T  18334 tgcagtttactg 18323  T

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Target: scaffold0184; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 312
Target Start/End: Original strand, 17965 - 18079
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| ||||||||||||  |||| ||||||||| |||||||||| ||||||||   || ||| ||  |||||  ||| |  ||||||| |||||||    
T  17965 gagaattgatgttcccacatttgataaagttgtggcacacgagtaatttacgtttttgccccctcgacagttaactgccgaggaattagaaacccggctg 18064  T
Q  298 cagttaactgccgag 312  Q
    |||||||||||||||    
T  18065 cagttaactgccgag 18079  T

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Target: scaffold0078 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 54410 - 54521
Alignment:
Q  196 ttgagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggc 295  Q
    |||||||||||||||||||| |||||||| | ||||||| || ||||||||||||||||   ||||||||   |||||  |||||||||||||||||| |    
T  54410 ttgagaattgttgttcccacgttgcataaggatgtggcacacaagtaattgacgtttttgtcccttcggcggttaactgccgaagttttagaaatccgac 54509  T
Q  296 tgcagttaactg 307  Q
    ||||||| ||||    
T  54510 tgcagtttactg 54521  T

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Target: scaffold0078; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 312
Target Start/End: Complemental strand, 54879 - 54765
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgtttttaaaccttcggcaactaactatcgaagttttagaaatccggctg 297  Q
    |||||||| ||||||||||||  |||| ||||||||| |||||||||| ||||||||   || ||| ||  |||||  ||| |  ||||||| |||||||    
T  54879 gagaattgatgttcccacatttgataaagttgtggcacacgagtaatttacgtttttgccccctcgacagttaactgccgaggaattagaaacccggctg 54780  T
Q  298 cagttaactgccgag 312  Q
    |||||||||||||||    
T  54779 cagttaactgccgag 54765  T

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Target: scaffold0199 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 12400 - 12336
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaact-ctctcatccattattcatctc 362  Q
    ||||||||||||||| ||||||||||||||||||  |||| || |||||||||||||||||||||    
T  12400 agttaactgccgaggatcttctgctacaaatctggcagaatctactctcatccattattcatctc 12336  T

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Target: scaffold0199; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 311
Target Start/End: Complemental strand, 12466 - 12414
Alignment:
Q  259 cttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccga 311  Q
    ||||||||  |||||  ||||||||||||||||||||||||||||||||||||    
T  12466 cttcggcagttaactgccgaagttttagaaatccggctgcagttaactgccga 12414  T

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Target: scaffold0199; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 10646 - 10702
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgaggg 314  Q
    |||||||||| |||||  ||||||||||| || ||||| ||||||||||||||||||    
T  10646 ccttcggcaattaactgccgaagttttagtaaaccggcggcagttaactgccgaggg 10702  T

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Target: scaffold0192 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 299 - 362
Target Start/End: Complemental strand, 18911 - 18848
Alignment:
Q  299 agttaactgccgagggtcttctgctacaaatctgatagaaactctctcatccattattcatctc 362  Q
    ||||||||| ||||| ||||||||||||||||||  |||| || ||||||||||||||||||||    
T  18911 agttaactgtcgaggatcttctgctacaaatctggcagaagctttctcatccattattcatctc 18848  T

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Target: scaffold0192; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 25886 - 25942
Alignment:
Q  198 gagaattgttgttcccacattgcataatgttgtggcatacgagtaattgacgttttt 254  Q
    |||||||||||||  |||||||||||| | || ||||||||||||||| | ||||||    
T  25886 gagaattgttgttgacacattgcataaggctgaggcatacgagtaatttatgttttt 25942  T

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Target: scaffold0180 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 313
Target Start/End: Complemental strand, 15701 - 15646
Alignment:
Q  258 ccttcggcaactaactatcgaagttttagaaatccggctgcagttaactgccgagg 313  Q
    |||||||||  ||||| |||||||||||| || ||||| |||||||||||||||||    
T  15701 ccttcggcagttaactgtcgaagttttagtaaaccggcggcagttaactgccgagg 15646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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