View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14196_low_23 (Length: 357)

Name: NF14196_low_23
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14196_low_23
NF14196_low_23
[»] chr5 (3 HSPs)
chr5 (10-345)||(1748437-1748774)
chr5 (127-345)||(20686519-20686739)
chr5 (10-73)||(20686772-20686835)
[»] chr8 (1 HSPs)
chr8 (10-345)||(42383346-42383681)
[»] chr2 (1 HSPs)
chr2 (185-342)||(21988926-21989083)
[»] chr7 (1 HSPs)
chr7 (172-224)||(8944167-8944222)
[»] chr4 (1 HSPs)
chr4 (172-224)||(26887437-26887492)


Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 1748437 - 1748774
Alignment:
Q  10 aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcnnnnnnn-tgctcattcatattggtctaacattggt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||    
T  1748437 aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcaaaaaaaatgctcattcatattggtcaaacattggt 1748536  T
Q  109 atttgatcttttccaaccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1748537 atttgatcttttccaaccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaa 1748636  T
Q  209 caactaaagctagtgtggtagagcctgctgaagtagcacatgccataacca-nnnnnnnnnnnnngcctacaccagctagtgctaatataaactcggcta 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||              || ||||||||||||||||||||||||||||||||    
T  1748637 caactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccattttttttttttttgcttacaccagctagtgctaatataaactcggcta 1748736  T
Q  308 catttggctctttcatccgtttaccatgaagaaaatga 345  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1748737 catttggctctttcatccgtttaccatgaagaaaatga 1748774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 127 - 345
Target Start/End: Complemental strand, 20686739 - 20686519
Alignment:
Q  127 atgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaacaactaaagctagtgtgg 226  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  20686739 atgaaactgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccaccaatttgattaacaacgacaactaaagctagtgtgg 20686640  T
Q  227 tagagcctgctgaagtagcacatgccataacca--nnnnnnnnnnnnngcctacaccagctagtgctaatataaactcggctacatttggctctttcatc 324  Q
    |||||||||||||||||||||||||||||||||               || |||||||||||| |||||||||||||||||||||||||||||||| |||    
T  20686639 tagagcctgctgaagtagcacatgccataaccatctgtttttttttttgcttacaccagctagggctaatataaactcggctacatttggctctttgatc 20686540  T
Q  325 cgtttaccatgaagaaaatga 345  Q
    | |||||||||||||||||||    
T  20686539 cttttaccatgaagaaaatga 20686519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 20686835 - 20686772
Alignment:
Q  10 aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgc 73  Q
    ||||||||| |||| |||||||||||||||||| || | |||||||||||| ||||||||||||    
T  20686835 aagcaaaggtagtataaaaacaataatttaattcgttagactcttaagattgcagtcaatttgc 20686772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 42383346 - 42383681
Alignment:
Q  10 aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcnnnnnnn-tgctcattcatattggtctaacattggt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  42383346 aagcaaaggcagtacaaaaacaataatttaatttgtcaaactcttaagattacagtcaatttgcaaaaaaaatgctcattcatattggtctaacattggt 42383445  T
Q  109 atttgatcttttccaaccatgaaattgaattaggcccttagatcttcatggtttgcgacaatgcaaatgacttagccaccactaatttgattaacaacaa 208  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  42383446 atttgttcttttccaaccatgaaattgaattaggcccttagatcttcatggtttacgacaatgcaaatgacttagccaccactaatttgattaacagcaa 42383545  T
Q  209 caactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnngcctacaccagctagtgctaatataaactcggctac 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||             || |||||||||||||||||||||||||||||||||    
T  42383546 caactaaagctagtgtggtagagcctgctgaagtagcacatgccataacca-ttttttttttttgcttacaccagctagtgctaatataaactcggctac 42383644  T
Q  309 atttggctctttcatccgtttaccatgaagaaaatga 345  Q
    |||||||||||||||||||||||||||||||||||||    
T  42383645 atttggctctttcatccgtttaccatgaagaaaatga 42383681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 342
Target Start/End: Original strand, 21988926 - 21989083
Alignment:
Q  185 caccactaatttgattaacaacaacaactaaagctagtgtggtagagcctgctgaagtagcacatgccataaccannnnnnnnnnnnngcctacaccagc 284  Q
    |||||| | |||||||||||||| ||||||||| |||||| |||| | | |||||||||||| ||||||||||||             |  | |||||||    
T  21988926 caccaccagtttgattaacaacagcaactaaagttagtgtcgtagtgtccgctgaagtagcatatgccataaccatcagtttttcttagtttccaccagc 21989025  T
Q  285 tagtgctaatataaactcggctacatttggctctttcatccgtttaccatgaagaaaa 342  Q
    ||||||| |||||||||  |||||||||| |||||| |||| |  |||||||||||||    
T  21989026 tagtgctgatataaacttagctacatttgactctttgatccttccaccatgaagaaaa 21989083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 8944167 - 8944222
Alignment:
Q  172 caaatgacttagcca---ccactaatttgattaacaacaacaactaaagctagtgt 224  Q
    |||||||||||||||   |||| |||||||||||||||| |||| |||||||||||    
T  8944167 caaatgacttagccatcaccaccaatttgattaacaacagcaacaaaagctagtgt 8944222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 26887492 - 26887437
Alignment:
Q  172 caaatgacttagcca---ccactaatttgattaacaacaacaactaaagctagtgt 224  Q
    |||||||||||||||   |||| |||||||||||||||| |||| |||||||||||    
T  26887492 caaatgacttagccatcaccaccaatttgattaacaacagcaacaaaagctagtgt 26887437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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