View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_28 (Length: 331)
Name: NF14196_low_28
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 6565398 - 6565713
Alignment:
| Q |
1 |
ttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttcctcc |
100 |
Q |
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| T |
6565398 |
ttgataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttcctcc |
6565497 |
T |
|
| Q |
101 |
ttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatct |
200 |
Q |
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| T |
6565498 |
ttatctcccttcccatgtaagtagattaagtcagtgatcgatcaattgtattcactatatctcactgatcaattgtattcaatgcatttggtatatatct |
6565597 |
T |
|
| Q |
201 |
taattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaaactgtgtattgtgtattttagacgttagagcttgtggctgaagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6565598 |
taattagaattaagtttttgatctttgatatctatagacatcgaaagtaagaaaaactgtgtattgtgtattttagacgttagagcttgtggctgaagtt |
6565697 |
T |
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| Q |
301 |
gcggtattggaggaag |
316 |
Q |
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|||||||||||||||| |
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| T |
6565698 |
gcggtattggaggaag |
6565713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 34261493 - 34261390
Alignment:
| Q |
3 |
gataagttaaagaggaagctaagacatgaagagaatgttcatagagtgttagaaagagcactcactagacctttgggcgcacttcctcgtcttcctcctt |
102 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||| | || |||||||| || | | |||||||||||||||| |
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| T |
34261493 |
gataagttgaagaggaagctaagacatgaagagaatgttcacagagctttagaaagagcatttacaagacctttaggatctttgcctcgtcttcctcctt |
34261394 |
T |
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| Q |
103 |
atct |
106 |
Q |
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|||| |
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| T |
34261393 |
atct |
34261390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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