View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_3 (Length: 674)
Name: NF14196_low_3
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_3 |
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| [»] scaffold0810 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 397
Target Start/End: Original strand, 54181292 - 54181678
Alignment:
| Q |
11 |
cacagacatccaaaacacctttcagtggtccctcagctgcctttctgaatgctgcattgacatcttcagctgaaatacccttcttcgcaacattcaccac |
110 |
Q |
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| T |
54181292 |
cacagacatccaaaacacctttcagtggtccctcagctgcctttctgaatgctgcattgacatcttcggctgaaatacccttcttcgcaacattcaccac |
54181391 |
T |
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| Q |
111 |
aaggtcaacaactgaaacattaggtgttggcacacgaagggcgattccattgagctttcccttgagctgtggcagcactagagagacagccttggctgct |
210 |
Q |
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| T |
54181392 |
aaggtcaacaactgaaacattaggtgttggcacacgaagggcgattccgttgagctttcccttgagctgtggcagcactagagagacagccttggctgct |
54181491 |
T |
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| Q |
211 |
cctgtgctggtggggacaatgttcagtgctgcagccctggctcttctcaagtctctgtgtgaagcatccagaagcctctgcacaaacacaacttttagac |
310 |
Q |
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| T |
54181492 |
cctgtgctggtggggacaatgttcagtgctgcagccctggctcttctcaagtctctgtgtgaagcatccagaagcctctgcacaaacacaacttttagac |
54181591 |
T |
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| Q |
311 |
tttgtttggcttgatttgttttggcacaaaaaatcactttaaaattaaaaataagagctttagaaataaagctcaagttgtttgata |
397 |
Q |
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| T |
54181592 |
tttgtttgacttgatttgttttggcactaaaaatcactttaaaattaaaaataagagctttagaaataaagctcaagttgtttgata |
54181678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 440 - 659
Target Start/End: Original strand, 54181716 - 54181935
Alignment:
| Q |
440 |
agagaataatagaatttgggttaaataataataaaacagatcaaattatcaaagttctcccacttgaaaagttactcatatatagtttctatatataaaa |
539 |
Q |
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| T |
54181716 |
agagaataatagaatttgggttaaataataataaaacagatcaaattatcaaagttctcccacttgaaaagttactcatatatagtttctatatataaaa |
54181815 |
T |
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| Q |
540 |
gaataaaaagataagctttttaacaacactgtttgacctatcttcttttaagtaagtcagaccaagccgagccttgttgtaacttcttatccattttcag |
639 |
Q |
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| T |
54181816 |
gaataaaaagataagctttttaacaacactgtttgacctatcttcttttaagtaagtcagaccaagccgagccttgttgtaacttcttatccattttcag |
54181915 |
T |
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| Q |
640 |
ttggaagatcgactaggaag |
659 |
Q |
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| T |
54181916 |
ttggatgatcgactaggaag |
54181935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 11423254 - 11423295
Alignment:
| Q |
356 |
taaaaataagagctttagaaataaagctcaagttgtttgata |
397 |
Q |
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| T |
11423254 |
taaaaattagagctttagaaataaagctaaagttgtttgata |
11423295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 349 - 395
Target Start/End: Complemental strand, 32160654 - 32160608
Alignment:
| Q |
349 |
ttaaaattaaaaataagagctttagaaataaagctcaagttgtttga |
395 |
Q |
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| T |
32160654 |
ttaaaattaaaaataagaggtttaaaaataaagttaaagttgtttga |
32160608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0810 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0810
Description:
Target: scaffold0810; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 4716 - 4671
Alignment:
| Q |
349 |
ttaaaattaaaaataagagctttagaaataaagctcaagttgtttg |
394 |
Q |
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| T |
4716 |
ttaaagttaaaaataagtgctttagaagtaaagctaaagttgtttg |
4671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 24725128 - 24725083
Alignment:
| Q |
349 |
ttaaaattaaaaataagagctttagaaataaagctcaagttgtttg |
394 |
Q |
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| T |
24725128 |
ttaaagttaaaaataagtgctttagaattaaagctaaagttgtttg |
24725083 |
T |
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