View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_35 (Length: 261)
Name: NF14196_low_35
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 11709253 - 11709421
Alignment:
| Q |
19 |
taagttacaaggcaactaaaattggttaaacttacttcttgttagttgccttgcaacttccacaataaagtttgttaaggtaaaaaagacatcagttaga |
118 |
Q |
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| T |
11709253 |
taagttgcaaggcaactaaaattggttaaacttatttcttgttagttgccttgcaacttgcacaataaagtttgttaaggtaaaaaagacatcagttaga |
11709352 |
T |
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| Q |
119 |
cttgtatatgagcttcttttataggttagtatggcttattgtc-ttttcaaactatttcttcttttgag |
186 |
Q |
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| T |
11709353 |
cttgtatattagcttcttttataggttagtatggcttattgtctttttcaaactatttcttcttttgag |
11709421 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 230
Target Start/End: Original strand, 11709937 - 11710131
Alignment:
| Q |
44 |
ttaaacttacttcttgttagttgccttgcaacttccacaataaagtttgttaaggtaaaaaagacatcagttagacttgtatatgagcttcttttatagg |
143 |
Q |
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| T |
11709937 |
ttaaacttacttcttgatagttgccttacaacttgcacagtgaagtttgtcaaagtaaacaatatgtcagttagacttgt-catgagcttcctttataga |
11710035 |
T |
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| Q |
144 |
ttagtatggcttattgtcttttcaaactatttctt--ctttt-------gaggaatttcaaactagtcgcatattactaaaatgaatgtcattttg |
230 |
Q |
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| T |
11710036 |
ttagcatggtttattgtctttgcaaactgtttttttgcttttttttttgaaggaatttcaaactggtcacatattactaaaatgtatgtcattttg |
11710131 |
T |
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