View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_36 (Length: 261)
Name: NF14196_low_36
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_36 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 68 - 261
Target Start/End: Complemental strand, 53328904 - 53328711
Alignment:
| Q |
68 |
taaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtga |
167 |
Q |
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| T |
53328904 |
taacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtga |
53328805 |
T |
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| Q |
168 |
ctgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtct |
261 |
Q |
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| T |
53328804 |
cagcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacgtct |
53328711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 22898731 - 22898562
Alignment:
| Q |
80 |
ccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaa |
179 |
Q |
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|||||||| || |||||||| |||||||| || ||||| |||||||| |||||||| ||||| | | ||| ||||| ||||| || || ||||| | || |
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| T |
22898731 |
ccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaa |
22898632 |
T |
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| Q |
180 |
tcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcac |
249 |
Q |
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| T |
22898631 |
tcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcac |
22898562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 22950399 - 22950230
Alignment:
| Q |
80 |
ccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaa |
179 |
Q |
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|||||||| || |||||||| |||||||| || ||||| |||||||| |||||||| ||||| | | ||| ||||| ||||| || || ||||| | || |
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| T |
22950399 |
ccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaa |
22950300 |
T |
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| Q |
180 |
tcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcac |
249 |
Q |
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| T |
22950299 |
tcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgatacgcttcac |
22950230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 68 - 258
Target Start/End: Original strand, 26358540 - 26358730
Alignment:
| Q |
68 |
taaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtga |
167 |
Q |
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||||| || ||||| ||||| |||||||| ||||||||||| || |||||||||||||| |||||||| || || || |||||||| || ||||| |||| |
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| T |
26358540 |
taacccccaaaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtga |
26358639 |
T |
|
| Q |
168 |
ctgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacg |
258 |
Q |
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| T |
26358640 |
cagcatcacgaataacattctcaagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgatacgttttacaccaccacg |
26358730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 66 - 258
Target Start/End: Original strand, 39954835 - 39955027
Alignment:
| Q |
66 |
tttaaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggt |
165 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||||||| || | | ||||||||| ||||| || |
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| T |
39954835 |
tttaaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagt |
39954934 |
T |
|
| Q |
166 |
gactgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccaccacg |
258 |
Q |
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| T |
39954935 |
aacagcatcacgaatcacattctcaagaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccaccacg |
39955027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 249
Target Start/End: Complemental strand, 41027747 - 41027581
Alignment:
| Q |
83 |
taaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatca |
182 |
Q |
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|||||||||||||| || ||||| | || |||||||||||||| |||||||||||||| | | ||| ||||||||||| || || ||||||||||| | |
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| T |
41027747 |
taaagagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataa |
41027648 |
T |
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| Q |
183 |
cattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcac |
249 |
Q |
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||||||| | ||||||||| | |||||||| || ||||| ||||| || || || ||||||||||| |
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| T |
41027647 |
cattctccaaaaagatcttcaacacgccacgtgtctcttcgtagatcaaaccgcttatacgcttcac |
41027581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 175
Target Start/End: Complemental strand, 30012194 - 30012096
Alignment:
| Q |
77 |
aaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatca |
175 |
Q |
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| T |
30012194 |
aaaccataaagggtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatca |
30012096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 21584590 - 21584776
Alignment:
| Q |
69 |
aaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgac |
168 |
Q |
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|||| ||||| || ||||| || ||||| |||||||| | ||| |||||||||||||| ||||| |||||||| | | |||||||| ||||| || || |
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| T |
21584590 |
aacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaac |
21584689 |
T |
|
| Q |
169 |
tgcatcacgaatcacattct-caagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc |
255 |
Q |
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| T |
21584690 |
cgcatcacgaatcacattctccaagaaa-atcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccacc |
21584776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 92 - 255
Target Start/End: Original strand, 31825573 - 31825736
Alignment:
| Q |
92 |
cttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaa |
191 |
Q |
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|||||||||||||| | ||| || ||||||||||| || ||||| ||||| | | ||| ||||| ||||| ||||| |||||||| || |||||||| | |
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| T |
31825573 |
cttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatcacggatgacattctcca |
31825672 |
T |
|
| Q |
192 |
gaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc |
255 |
Q |
| |
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|||||||| | || || | ||||||||||||||| || |||||||| | |||||||||||| |
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| T |
31825673 |
agaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccacc |
31825736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 255
Target Start/End: Complemental strand, 25085204 - 25085041
Alignment:
| Q |
92 |
cttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgactgcatcacgaatcacattctcaa |
191 |
Q |
| |
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|||||||| ||||| | ||| || ||||||||||| || || |||||||| | | || ||||| ||||| || ||||||||||| ||||||||||| | |
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| T |
25085204 |
cttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacggatcacattctcca |
25085105 |
T |
|
| Q |
192 |
gaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc |
255 |
Q |
| |
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|||||||| | || || | ||||||||||| || || |||||||| | |||||||||||| |
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| T |
25085104 |
agaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccacc |
25085041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 255
Target Start/End: Complemental strand, 24982235 - 24982049
Alignment:
| Q |
69 |
aaccgccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtaggtgac |
168 |
Q |
| |
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|||| |||||||| || || || ||||| || ||||| | ||| || ||||||||||| || ||||||||||| | | ||| ||||| ||||| || || |
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| T |
24982235 |
aaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaac |
24982136 |
T |
|
| Q |
169 |
tgcatcacgaatcacattctcaagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccacc |
255 |
Q |
| |
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||||||||| || |||||||| | |||||||| | || || | ||||||||||| || || |||||||| | ||| |||||||| |
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| T |
24982135 |
tgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccacc |
24982049 |
T |
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