View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_4 (Length: 616)
Name: NF14196_low_4
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 393 - 598
Target Start/End: Original strand, 41921480 - 41921685
Alignment:
| Q |
393 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcattttt |
492 |
Q |
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| T |
41921480 |
agttttgtttaatttttgagaaaacattttaacaacaaatagatatttcaaatttaaagaaattacttgctactttatatgccaagacttatgcattttt |
41921579 |
T |
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| Q |
493 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
592 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41921580 |
ccttaatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
41921679 |
T |
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| Q |
593 |
ttatat |
598 |
Q |
| |
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|||||| |
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| T |
41921680 |
ttatat |
41921685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 146 - 341
Target Start/End: Original strand, 41921273 - 41921468
Alignment:
| Q |
146 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
245 |
Q |
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| T |
41921273 |
atgcttcacaatctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgta |
41921372 |
T |
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| Q |
246 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
341 |
Q |
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| T |
41921373 |
agtttctcactttcctatattcttatgttatattcccttgtttattgtatttatttatgcaataacgatactagaacaaattcactacttcaagtg |
41921468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 10 - 148
Target Start/End: Original strand, 41921104 - 41921239
Alignment:
| Q |
10 |
gattatacttatgagagtgatgaagaagatattgagagcgatgaagaaggtattgagagcgatgaagaagatattgaggatattccaacatttaacctca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
41921104 |
gattatacttatgagagtgatgaagaagatattgagagtgacgaagaagatattgagagtgatgaagaagatattgaggatattccaacatttaacatca |
41921203 |
T |
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| Q |
110 |
gtagtcaagaatcatcatcatcatgcctgccaatgtatg |
148 |
Q |
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| T |
41921204 |
gtagtcaagaatca---tcatcatgtctgccaatgtatg |
41921239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 98; Significance: 6e-48; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 419 - 600
Target Start/End: Original strand, 1698822 - 1699003
Alignment:
| Q |
419 |
ttttaacaacaaatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttt--tcctttatctgttcagttatgtcct |
516 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
1698822 |
ttttaacaacatgtagatatttcaaatttaaataaattacttactacttcatatgctaagac--atgcatttttttcctttatctattcagttatgtcct |
1698919 |
T |
|
| Q |
517 |
cacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaagttatatat |
600 |
Q |
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|||||||||||| ||||| ||| ||||||||||| ||||||||||||| |||||| | || || ||||||||||||||||||| |
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| T |
1698920 |
cacggataatcatcctctcctaactgaggtaggtatcaaaataatcacgaagtaaattgttatacacacatgaaagttatatat |
1699003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 156 - 275
Target Start/End: Original strand, 1695370 - 1695489
Alignment:
| Q |
156 |
atctttagttgcatttcatccaaatgctacaaacagtcatttatcaaaaatgaaaaatgctagtcgcttgaaaactgagcgcacagtgtaagtttctcac |
255 |
Q |
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||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
1695370 |
atctttagttgcattacatccaaatgctacaatcaatcgtttatcaaaaatgaaaaatgctagccgcctgaaaactgagcgtttagtgtaagtttctcac |
1695469 |
T |
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| Q |
256 |
tttcctatattcttatgtta |
275 |
Q |
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|||||||||||||||||||| |
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| T |
1695470 |
tttcctatattcttatgtta |
1695489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 493 - 600
Target Start/End: Original strand, 36000637 - 36000744
Alignment:
| Q |
493 |
cctttatctgttcagttatgtcctcacggataatcaccctcttctagctgaggtaggtgtcaaaataatcacaaagtaagcttttttatacacatgaaag |
592 |
Q |
| |
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||||||| ||||||||||||| || | ||||||||||||||| |||| ||||||| || |||||||||||||||||| |||| || |||||| ||| |
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| T |
36000637 |
cctttatttgttcagttatgttcttaaggataatcaccctctcctagttgaggtaagtcccaaaataatcacaaagtacactttaatacacacatcaaaa |
36000736 |
T |
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| Q |
593 |
ttatatat |
600 |
Q |
| |
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|||||||| |
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| T |
36000737 |
ttatatat |
36000744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 430 - 564
Target Start/End: Original strand, 1309963 - 1310097
Alignment:
| Q |
430 |
aatagatatttcaaatttaaagaaattacttactactttatatgccaagacttatgcatttttcctttatctgttcagttatgtcctcacggataatcac |
529 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||| || |||| | | |||| ||||||| |||||||||||||| |||||| ||||| |
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| T |
1309963 |
aatagatatttcaaatttaaagaagttacttactactttgcatgctaatccttacgtaattttgttttatctattcagttatgtcctaacggatgatcac |
1310062 |
T |
|
| Q |
530 |
cctcttctagctgaggtaggtgtcaaaataatcac |
564 |
Q |
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||||| |||| |||||||| |||||||||||| |
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| T |
1310063 |
cctctcctagtcaaggtaggtagcaaaataatcac |
1310097 |
T |
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