View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14196_low_5 (Length: 539)
Name: NF14196_low_5
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_5 |
 | |
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| [»] scaffold0003 (2 HSPs) |
| | |
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Alignment Details
Target: chr6 (Bit Score: 499; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 14 - 536
Target Start/End: Original strand, 4365471 - 4365993
Alignment:
| Q |
14 |
aatacaacataaagtatagtatgatgtttgccattgatacatgcccaattttaaaatatcttttccttttgtgaagtgccacaatagagacttgacagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4365471 |
aatacaacataaagtatagtatgatgtttgccattgatacatgcccaattttaaaatatcttttccttttgtgaagtgccacaatagagacttgacagaa |
4365570 |
T |
|
| Q |
114 |
ggccttgtatgaataaaggttataagactctgacacttcttaattatctctgagtgaataggtatattctcctcacagtcttccaatatcgtcagaatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4365571 |
ggccttgtatgaataaaggttataagactctgacacttcttaattatctctgagtgaataggtatattctcctcacagtcttccaatatcgtcagaatgc |
4365670 |
T |
|
| Q |
214 |
aatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4365671 |
aatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggac |
4365770 |
T |
|
| Q |
314 |
aacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaag |
413 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4365771 |
agcattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttctcaggcgattccaacatatcagacgcatcaatagacttcaaaaag |
4365870 |
T |
|
| Q |
414 |
aatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagctgatccatcaaccattatggtgcaacctgttacct |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
4365871 |
aatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagccgatccatcaaccattatggtgcaacctgttactt |
4365970 |
T |
|
| Q |
514 |
tccatatagctctgtgctcctcc |
536 |
Q |
| |
|
||||||||||||| || |||||| |
|
|
| T |
4365971 |
tccatatagctctatgttcctcc |
4365993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 526
Target Start/End: Original strand, 4369871 - 4370377
Alignment:
| Q |
14 |
aatacaacataaagtatagtatgatgtttgccattgatacatgcccaattttaaaatatcttttccttttgtgaagtgccacaatagagacttgacagaa |
113 |
Q |
| |
|
|||||||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||||||||||| |
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|
| T |
4369871 |
aatacaacataaagtaaagtatgatgtttcactttgatacatgcccacttttaaaatatcttttccttttgtgaaatgccgcattagagacttgacagaa |
4369970 |
T |
|
| Q |
114 |
ggccttgtatgaataaaggttataagactctgacacttcttaattatctctgagtgaataggtatattctcctcacagtcttccaatatcgtcagaatgc |
213 |
Q |
| |
|
|| ||| || |||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||| |||| ||| || |||||| |
|
|
| T |
4369971 |
gggcttacataaataaaggctataagatcttgacatttcttagttatctctgagtgaataggtatattcgtctcacagtctgccaaaatcatctgaatgc |
4370070 |
T |
|
| Q |
214 |
aatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggac |
313 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| |||||| |||||| |||| | | | ||| | || || ||||| ||||||||||| ||||| |
|
|
| T |
4370071 |
aatttgttgcacaaggggtccaatacagcctagttcttttctccatcaacatctcaccaacagctctgcagaatggtgtattgtccgtcacaatttggac |
4370170 |
T |
|
| Q |
314 |
aacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaag |
413 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4370171 |
aacattttcttctccaacctcttcaacaatgttgtccaaaatccgaaagagtttgtcaggcgattccaacatatcagttgcatcaatagacttcaaaaag |
4370270 |
T |
|
| Q |
414 |
aatgttccctttggactgttcactaaccagtttagtatggtcctactctccgtgtcactgtcagctgatccatcaaccattatggtgcaacctgttacct |
513 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||| ||||||||||||||| | |||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
4370271 |
aatgttccgtttggactgttcactaacaagtttattatggtcctactctctg------cgtcaaccgatccatcaaccattatggtgcaacctgttacct |
4370364 |
T |
|
| Q |
514 |
tccatatagctct |
526 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
4370365 |
tccacatagctct |
4370377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 209 - 457
Target Start/End: Original strand, 4360270 - 4360518
Alignment:
| Q |
209 |
aatgcaatctgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatg |
308 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||| |||||| ||| | |||||| |||||||||||| |||| | |
|
|
| T |
4360270 |
aatgcaatgtgttgcgcaaggtgtccaatacagcctagtccttttcgccatcaacatcccagcggcagctacatagtatggtgtatattccgttacaacg |
4360369 |
T |
|
| Q |
309 |
tggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttca |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4360370 |
tggacaacattttcttccccaacctcttcaacaacgtcatccatcattttaaagagtttctcagacgattccaacatatcagacgcatcaatagtcttca |
4360469 |
T |
|
| Q |
409 |
aaaagaatgttccctttggactgttcactaaccagtttagtatggtcct |
457 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||| |||| |
|
|
| T |
4360470 |
aaaagaatgttccctttggactgttcagtaacaagtttagtatgttcct |
4360518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 218 - 420
Target Start/End: Complemental strand, 4414640 - 4414439
Alignment:
| Q |
218 |
tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaaca |
317 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||| |||| | | || || |||||| ||||| || |||||||| ||||||||| |
|
|
| T |
4414640 |
tgttgcacaaggtgtccaatacaacctagtccttttcaccatctacatctcaccagcaactttgtagtaggttgtattgtctgtcacaatttggacaaca |
4414541 |
T |
|
| Q |
318 |
ttttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaatg |
417 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
4414540 |
ttttcttccc-aacctcttctacaatttcatccatcatcttaaagagtttgttaggtgattccaacatattcgacgcatcaacggacttcaaaaagaatg |
4414442 |
T |
|
| Q |
418 |
ttc |
420 |
Q |
| |
|
||| |
|
|
| T |
4414441 |
ttc |
4414439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 312 - 418
Target Start/End: Original strand, 4377325 - 4377431
Alignment:
| Q |
312 |
acaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||||||||| |||||| |||||||||| |||||||||| |
|
|
| T |
4377325 |
acaacattttcttccccaacctcttcaacaacatcatccatcatcttaaacaatttctcaggcgattccatcatatctgacgcatcaaccgacttcaaaa |
4377424 |
T |
|
| Q |
412 |
agaatgt |
418 |
Q |
| |
|
||||||| |
|
|
| T |
4377425 |
agaatgt |
4377431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 415
Target Start/End: Original strand, 4384740 - 4385001
Alignment:
| Q |
154 |
taattatctctgagtgaataggtatattctcctcacagtcttccaatatcgtcagaatgcaatctgttgcacaaggggtccaatacagcctagtcctttt |
253 |
Q |
| |
|
||||||||||| |||| |||||| |||| |||| | |||||||| ||| || |||||| | ||| |||||||| |||||||||| ||||||||| || |
|
|
| T |
4384740 |
taattatctcttcatgaacaggtatcttcttctcataatcttccaacatcctctcaatgcagtgtgtcgcacaaggtgtccaatacaacctagtcctctt |
4384839 |
T |
|
| Q |
254 |
cgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaacattttcttccccaacctcttcaacaacgtcatccatc |
353 |
Q |
| |
|
| |||||| |||| | | || ||| | | || | |||| ||||| |||| || |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4384840 |
ctccatcaacatctcaccagcagctttgaaataagccgtattatccgtgacaacttgaacaacattttcttccccaacctcttcaacaacatcatccatc |
4384939 |
T |
|
| Q |
354 |
atcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaa |
415 |
Q |
| |
|
|||||||| | ||| |||| ||||||||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
4384940 |
atcttaaacaatttctcagacgattccaacatatctgacgcatcaaccgactttaaaaagaa |
4385001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 223 - 415
Target Start/End: Original strand, 4389919 - 4390111
Alignment:
| Q |
223 |
cacaaggggtccaatacagcctagtccttttcgccatcagcatcatagcggctgctgcgtagtattctgtatattccgtcacaatgtggacaacattttc |
322 |
Q |
| |
|
||||||| |||||||||| ||||||||| ||| |||||| |||| | | || ||| | | ||| | |||| |||||||||| || ||||||||||| |
|
|
| T |
4389919 |
cacaaggtgtccaatacaacctagtcctcttctccatcaacatctcaccagcagctctgaaatatgccgtattatccgtcacaacttgaacaacattttc |
4390018 |
T |
|
| Q |
323 |
ttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttcaaaaagaa |
415 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| | ||| |||| ||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
4390019 |
ttcaccaacctcttcaacaacatcatccatcatcttaaacaatttctcagacgattccaacatatcggacgcatcaaccgacttcaaaaagaa |
4390111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 297 - 452
Target Start/End: Complemental strand, 5725547 - 5725395
Alignment:
| Q |
297 |
tccgtcacaatgtggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcga--ttccaacatatcagacgc |
394 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||| || || ||||||| | |
|
|
| T |
5725547 |
tccgtcacaatttggacaacattttcttccccaacttcttcaacaatgtcatccatcatcttaaatagttcttcaggtgaactt-----atatcagctga |
5725453 |
T |
|
| Q |
395 |
atcaatagacttcaaaaagaatgttccctttggactgttcactaaccagtttagtatg |
452 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || || ||||||||||| |
|
|
| T |
5725452 |
ttcaacagacttcaaaaagaatgttccctttggactgtttacgaagaagtttagtatg |
5725395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 5725626 - 5725578
Alignment:
| Q |
218 |
tgttgcacaaggggtccaatacagcctagtccttttcgccatcagcatc |
266 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
5725626 |
tgttgcacaaggtgtccaatacaacctagtccttttcttcatcaacatc |
5725578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 430
Target Start/End: Complemental strand, 15658753 - 15658632
Alignment:
| Q |
309 |
tggacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaagagtttgtcaggcgattccaacatatcagacgcatcaatagacttca |
408 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||| ||||||||||| | ||| |||| | || || ||||| | |||||||||||| | |
|
|
| T |
15658753 |
tggacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaaaattttatcagcagttttggtaatgtcagatggatcaatagacttta |
15658654 |
T |
|
| Q |
409 |
aaaagaatgttccctttggact |
430 |
Q |
| |
|
|||| || |||||||||||||| |
|
|
| T |
15658653 |
aaaaaaaagttccctttggact |
15658632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 361
Target Start/End: Original strand, 245811 - 245861
Alignment:
| Q |
311 |
gacaacattttcttccccaacctcttcaacaacgtcatccatcatcttaaa |
361 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
245811 |
gacaacattttcttctccaatctcttcaacaacatcatcaatcatcttaaa |
245861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 361
Target Start/End: Complemental strand, 244686 - 244638
Alignment:
| Q |
313 |
caacattttcttccccaacctcttcaacaacgtcatccatcatcttaaa |
361 |
Q |
| |
|
||||||||||||| |||| || ||||||||| ||||| ||||||||||| |
|
|
| T |
244686 |
caacattttcttctccaatcttttcaacaacatcatcaatcatcttaaa |
244638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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