View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14196_low_9 (Length: 474)
Name: NF14196_low_9
Description: NF14196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14196_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Complemental strand, 2468119 - 2467667
Alignment:
| Q |
1 |
tagcaaaatcagaagcagcaactgccggaaaagcatcttgaagtgcgaagaacgcagagaacagcataaacttcaaaactgtcatggatgcatcatcatt |
100 |
Q |
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| T |
2468119 |
tagcaaaatcagaagcagcaactgccggaaaagcatcttgaagtgcgaagaacgcggagaacagcataaacttcaaaactgtcatggatgcatcatca-- |
2468022 |
T |
|
| Q |
101 |
atcatcagaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaa |
200 |
Q |
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| T |
2468021 |
-------gaagacacattctgtgttgccaattggcattgagaatcggaattttcggcaacagagtcatcctcggaagcacgaacgaatccctatacgaaa |
2467929 |
T |
|
| Q |
201 |
atgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgttgtagcccgaaaaatgttggtgaattgaaagcg |
300 |
Q |
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| T |
2467928 |
atgaaaataaatttgaggcattgaattgaatgaaatgaagttgaagataggttcaggaaattaccgttgtagaccgaaaaatgttggtgaattgaaagcg |
2467829 |
T |
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| Q |
301 |
tggtggtaatttgagattgcagcgaggagtaggaggggggaaaatggaagaggatataagtgaggtggtgaaagatgaaaagtgctggctcttaaatggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2467828 |
tggtggtaatttgagattgcagcgaggagtaggagggggaaaaatggaagaggatataagtgaggtggtgaaagataaaaagtgctggctcttaaatggt |
2467729 |
T |
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| Q |
401 |
tttggaaacgaatggagcgaatgtgagaaaaagtgtgattgcatttctaattccttcttctg |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2467728 |
tttggaaacgaatggagcgaatgtgagaaaaagtgtgattgcatttctaattccttcttctg |
2467667 |
T |
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