View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14197_high_1 (Length: 742)

Name: NF14197_high_1
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14197_high_1
NF14197_high_1
[»] chr3 (30 HSPs)
chr3 (149-444)||(31425633-31425928)
chr3 (498-724)||(31425345-31425581)
chr3 (1-151)||(31426263-31426423)
chr3 (360-444)||(15927479-15927563)
chr3 (358-444)||(31930917-31931003)
chr3 (364-444)||(37143206-37143284)
chr3 (360-444)||(31350490-31350574)
chr3 (358-440)||(31664714-31664796)
chr3 (368-444)||(49875897-49875972)
chr3 (356-443)||(1291619-1291706)
chr3 (368-444)||(33976286-33976362)
chr3 (370-444)||(46114255-46114329)
chr3 (499-554)||(31931044-31931099)
chr3 (362-444)||(50886295-50886375)
chr3 (500-545)||(37143121-37143166)
chr3 (368-444)||(4617779-4617855)
chr3 (360-444)||(41610418-41610502)
chr3 (500-541)||(31350632-31350673)
chr3 (500-541)||(37410888-37410929)
chr3 (499-554)||(31664615-31664669)
chr3 (361-444)||(37279154-37279237)
chr3 (499-549)||(28539766-28539815)
chr3 (499-541)||(40367612-40367654)
chr3 (500-545)||(15927621-15927666)
chr3 (500-541)||(27168708-27168749)
chr3 (506-555)||(37754437-37754486)
chr3 (500-541)||(48353000-48353041)
chr3 (500-541)||(49417579-49417620)
chr3 (500-541)||(49875800-49875841)
chr3 (500-541)||(50638375-50638416)
[»] chr7 (17 HSPs)
chr7 (368-444)||(2819356-2819432)
chr7 (368-444)||(19223549-19223625)
chr7 (368-444)||(12651214-12651290)
chr7 (500-541)||(19223443-19223484)
chr7 (368-443)||(18736106-18736180)
chr7 (500-541)||(43159601-43159642)
chr7 (500-545)||(48814834-48814879)
chr7 (500-542)||(2819256-2819298)
chr7 (499-541)||(30061285-30061327)
chr7 (503-541)||(42598237-42598275)
chr7 (400-444)||(9792871-9792916)
chr7 (500-537)||(21103020-21103057)
chr7 (500-541)||(22638910-22638951)
chr7 (500-541)||(33057383-33057424)
chr7 (500-541)||(37899239-37899280)
chr7 (500-537)||(40417783-40417820)
chr7 (363-416)||(48591151-48591204)
[»] chr6 (13 HSPs)
chr6 (363-443)||(10729675-10729755)
chr6 (361-440)||(28982526-28982605)
chr6 (360-444)||(34383742-34383826)
chr6 (365-444)||(5456739-5456818)
chr6 (360-440)||(2204287-2204367)
chr6 (368-444)||(354375-354450)
chr6 (500-543)||(28982665-28982708)
chr6 (500-545)||(354276-354321)
chr6 (500-541)||(33651024-33651065)
chr6 (500-541)||(34383884-34383925)
chr6 (500-539)||(5739790-5739829)
chr6 (500-542)||(5456876-5456918)
chr6 (500-541)||(14817936-14817976)
[»] chr1 (19 HSPs)
chr1 (363-444)||(46859533-46859614)
chr1 (364-444)||(36775208-36775288)
chr1 (500-545)||(18982519-18982564)
chr1 (368-444)||(5466227-5466303)
chr1 (370-444)||(27260603-27260677)
chr1 (503-545)||(36775072-36775114)
chr1 (500-545)||(46859418-46859463)
chr1 (368-444)||(38289667-38289743)
chr1 (500-539)||(36775112-36775151)
chr1 (499-541)||(52714926-52714968)
chr1 (500-541)||(1689395-1689436)
chr1 (500-545)||(11897312-11897357)
chr1 (500-541)||(32915098-32915139)
chr1 (500-541)||(34008184-34008225)
chr1 (363-444)||(35414463-35414544)
chr1 (500-541)||(36230200-36230241)
chr1 (359-444)||(41411059-41411144)
chr1 (500-541)||(47214212-47214253)
chr1 (500-541)||(49065390-49065431)
[»] chr4 (12 HSPs)
chr4 (362-444)||(3698416-3698498)
chr4 (499-541)||(1816025-1816067)
chr4 (363-410)||(4272455-4272502)
chr4 (413-444)||(7146069-7146100)
chr4 (362-421)||(54128172-54128231)
chr4 (520-554)||(37249066-37249100)
chr4 (500-554)||(54909314-54909368)
chr4 (500-541)||(2999116-2999157)
chr4 (368-433)||(4700013-4700078)
chr4 (500-541)||(38519797-38519838)
chr4 (400-444)||(51734556-51734601)
chr4 (500-541)||(53654776-53654817)
[»] chr5 (14 HSPs)
chr5 (368-444)||(16594271-16594344)
chr5 (368-444)||(25603560-25603634)
chr5 (358-440)||(13739543-13739625)
chr5 (500-541)||(16594402-16594443)
chr5 (518-554)||(266896-266932)
chr5 (368-444)||(16967370-16967446)
chr5 (506-541)||(14062865-14062900)
chr5 (503-541)||(13309886-13309924)
chr5 (362-440)||(26009128-26009205)
chr5 (499-541)||(32872923-32872965)
chr5 (499-541)||(43214084-43214126)
chr5 (500-541)||(5721844-5721884)
chr5 (363-444)||(29499664-29499745)
chr5 (500-541)||(40039294-40039335)
[»] chr8 (18 HSPs)
chr8 (375-444)||(40649567-40649636)
chr8 (368-443)||(36023186-36023261)
chr8 (363-428)||(44952746-44952811)
chr8 (500-544)||(21514963-21515007)
chr8 (368-444)||(12171982-12172059)
chr8 (368-444)||(12416410-12416487)
chr8 (503-541)||(31266263-31266301)
chr8 (500-541)||(40649454-40649495)
chr8 (413-444)||(31266171-31266202)
chr8 (362-440)||(7612095-7612173)
chr8 (499-541)||(18651374-18651416)
chr8 (499-541)||(42733590-42733632)
chr8 (503-541)||(45406013-45406051)
chr8 (500-541)||(31596952-31596993)
chr8 (500-541)||(36023088-36023129)
chr8 (363-440)||(37792050-37792126)
chr8 (400-444)||(42733490-42733535)
chr8 (500-541)||(44064361-44064402)
[»] chr2 (14 HSPs)
chr2 (361-440)||(15260412-15260491)
chr2 (500-541)||(8427556-8427597)
chr2 (500-554)||(4384046-4384099)
chr2 (500-549)||(15269857-15269906)
chr2 (500-541)||(22526020-22526061)
chr2 (500-549)||(25881540-25881589)
chr2 (499-541)||(26481115-26481157)
chr2 (500-541)||(12498662-12498703)
chr2 (500-541)||(18876948-18876989)
chr2 (363-444)||(36003451-36003532)
chr2 (500-541)||(36517200-36517241)
chr2 (500-541)||(40210094-40210135)
chr2 (363-444)||(41317300-41317381)
chr2 (500-541)||(45259311-45259352)
[»] scaffold0481 (1 HSPs)
scaffold0481 (368-444)||(1093-1169)
[»] scaffold1956 (1 HSPs)
scaffold1956 (500-541)||(775-816)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 149 - 444
Target Start/End: Complemental strand, 31425928 - 31425633
Alignment:
Q  149 ttattagaactaaatgaactatttgtaaaatatacgtttttcttattagaaccaatttcttttgtcaatttaaggttagattgtaaacatacgcttttcc 248  Q
    |||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31425928 ttattataaccaaatgaactatttgtaaa-tatacgcttttcttattagaaccaatttcttttgtcaatttaaggttagattgtaaacatacgcttttcc 31425830  T
Q  249 tatttccattatgccctttgtcctttaaattgattttgagatgtatcccatttcacgttcttatgttgctattgtaacttgttgtttattcactcatctt 348  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  31425829 tatttccattatgccctttgtcctttaaattgattttgagatgta-cccatttcacgttgttatgttgctgttgtaacttgttgtttattcactcatctt 31425731  T
Q  349 ttgtagcttaaaaa--agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||  |||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  31425730 ttgtagcttaaaaaagagagtaatgatattttgacaactaattttcaataatttttaatgacaacctttttcctctctttttattggacaataacaat 31425633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 498 - 724
Target Start/End: Complemental strand, 31425581 - 31425345
Alignment:
Q  498 gattgtcacaaaaattgttaaaaaatagatgttcaaatatcattactccttaaaaaactacctcagttttctctatatttatttgtcatgaatcaccttc 597  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31425581 gattgtcacaaaagttgttaaaaaatggatgttcaaatatcattactccataaaaaactatctcagttttctctatatttatttgtcatgaatcaccttc 31425482  T
Q  598 agctgtcaaaataattcaaatggcagaaaaagaacggcttttgaaagtttgtaaagagaaaaggaaacaatat----------agtccacatggatacta 687  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||          |||||| ||||||||||    
T  31425481 agctgtcaaaataattcaaatggtagaaaaagaacggcttttgaaagtttgtaaagagaaaaggaaacaatatacttgagtgaagtccatatggatacta 31425382  T
Q  688 cgctttaaaaataaattttatataaagtgatgaggtt 724  Q
    |||||||||| ||||||||||||||||||||||||||    
T  31425381 cgctttaaaattaaattttatataaagtgatgaggtt 31425345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 31426423 - 31426263
Alignment:
Q  1 ttggataactatcaagtagaaaaaataggaggaacactcaaaataactaactaactaact----------ttttggttacaaaggactaagtgtatttaa 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||    
T  31426423 ttggataactatcaagtagaaaaaataggaggaacactcaaaataactaactaactaactcattaaatttttttggttacaaaggactaagtgtatttaa 31426324  T
Q  91 ggtgtttattttggagaaggggaaacctttattaattaaagtggcacatttggtcatctta 151  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  31426323 ggtgtttattttggacaaggggaaacctttattaattaaagtggcacatttggtcatctta 31426263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 15927479 - 15927563
Alignment:
Q  360 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||| | ||||||||||||||||||||||||    
T  15927479 aaaagagtaatgatattttgacaaccaatttccaataatttttagtgacaactttttttcgctctttttattggacaataacaat 15927563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 358 - 444
Target Start/End: Original strand, 31930917 - 31931003
Alignment:
Q  358 aaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||||||||||||| ||||||||| || ||||||||| || |||||||||||||||| |||||| |||||||||    
T  31930917 aaaaaagagtaatgatattttgacaaccaatttccaacaaattttagtgataacctttttcctctcttttcattggagaataacaat 31931003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 37143284 - 37143206
Alignment:
Q  364 gagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| |||||||  ||||||||||||||||||||||||    
T  37143284 gagtaatgatattttgacaactaatttccaacaacttttagtgacaacctttttc--ctctttttattggacaataacaat 37143206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 31350490 - 31350574
Alignment:
Q  360 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||| ||||||||||||||||| ||||||||| || ||||||||||||  ||||| ||||||||||||||||||||||||||    
T  31350490 aaaagaggaatgatattttgacaaccaatttccaacaacttttagtgacaactttttttctctctttttattggacaataacaat 31350574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 31664796 - 31664714
Alignment:
Q  358 aaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    ||||||||||||||||||||||||||| ||||||||| || ||||||||| || |||||||||||||||| |||||| |||||    
T  31664796 aaaaaagagtaatgatattttgacaaccaatttccaacaacttttagtgataacctttttcctctcttttcattggagaataa 31664714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 49875972 - 49875897
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||||||    
T  49875972 aatgatattttgacaaccaatttccaacaacttttagtgacaat-tttttcctctcttttcattggacaataacaat 49875897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 356 - 443
Target Start/End: Complemental strand, 1291706 - 1291619
Alignment:
Q  356 ttaaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 443  Q
    |||||| |||| |||||||||||||||||||| ||  || |||||||||||| |||||||||| |||||||| |||||||||||||||    
T  1291706 ttaaaatagaggaatgatattttgacaactaaattttaacaatttttagtgataatctttttcttctcttttaattggacaataacaa 1291619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 33976286 - 33976362
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||||||||||||||  |||||| ||| |||||||||||||||   ||||||||||||||||||||| |||||||||    
T  33976286 aatgatattttgacatttaattttcaacaatttttagtgacaacacttttcctctctttttattggataataacaat 33976362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 46114255 - 46114329
Alignment:
Q  370 tgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||  ||||||||| || |||| ||||||| ||||||||||||||| ||||| |||||||||||    
T  46114255 tgatattttgacaatcaatttccaacaacttttggtgacaacctttttcctctctttctattgaacaataacaat 46114329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 499 - 554
Target Start/End: Original strand, 31931044 - 31931099
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcattactccttaaaaaa 554  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||| | ||||||    
T  31931044 attgtcacaaaagttgttaaaaaatggatgttcaaatatcattactcttcaaaaaa 31931099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 50886375 - 50886295
Alignment:
Q  362 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||||||||  ||||| ||| || ||| ||||||||  ||||||  ||||||||||||||||||||||||    
T  50886375 aagagtaatgatattttgacaatcaattttcaacaactttcagtgacaacgtttttc--ctctttttattggacaataacaat 50886295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 545
Target Start/End: Complemental strand, 37143166 - 37143121
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  37143166 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 37143121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 4617855 - 4617779
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||| | |||||| || ||||||   ||||| | |||||||||| |||||||||||||||||||||    
T  4617855 aatgatattttgacatccaatttcaaacaattttggatgacagtttttttcctctatttttattggacaataacaat 4617779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 360 - 444
Target Start/End: Complemental strand, 41610502 - 41610418
Alignment:
Q  360 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||| |||||||||||||| || |||||  || || || |||||||||  ||||| ||||||||||||| ||||||||||||    
T  41610502 aaaagaggaatgatattttgactacaaattttaaacaacttctagtgacaacattttttctctctttttattagacaataacaat 41610418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 31350632 - 31350673
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  31350632 ttgtcacaaaaattgttaaaaaatggatgttaaaatatcatt 31350673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 37410929 - 37410888
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| |||||||| ||||||||||||||||    
T  37410929 ttgtcacaaaaattgtcaaaaaataaatgttcaaatatcatt 37410888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 554
Target Start/End: Complemental strand, 31664669 - 31664615
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcattactccttaaaaaa 554  Q
    |||||||||||  |||||||||||| ||||||||||||||||||||| | ||||||    
T  31664669 attgtcacaaag-ttgttaaaaaatggatgttcaaatatcattactcttcaaaaaa 31664615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 444
Target Start/End: Original strand, 37279154 - 37279237
Alignment:
Q  361 aaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||||| ||||||||||||||| |||||||| |||||||||   ||| ||  ||||||||   ||||||||||| |||||||||    
T  37279154 aaagaggaatgatattttgacatctaatttcaaataattttggatgataacttttttccttcatttttattggataataacaat 37279237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 549
Target Start/End: Original strand, 28539766 - 28539815
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcattactcctta 549  Q
    ||||||||||||||| | ||||||||| ||||||||||||||| |||||||    
T  28539766 attgtcacaaaaattat-aaaaaatagttgttcaaatatcatttctcctta 28539815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Complemental strand, 40367654 - 40367612
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||||| |||||||| | |||||||||||||    
T  40367654 attgtcacaaaaattgtttaaaaatagttattcaaatatcatt 40367612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 545
Target Start/End: Original strand, 15927621 - 15927666
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    |||| |||||| |||||||||||| ||||||||||||| |||||||    
T  15927621 ttgttacaaaagttgttaaaaaatggatgttcaaatattattactc 15927666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 27168708 - 27168749
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| ||||||||| | |||||||||||||||    
T  27168708 ttgtcacaaaaattattaaaaaatggttgttcaaatatcatt 27168749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 506 - 555
Target Start/End: Complemental strand, 37754486 - 37754437
Alignment:
Q  506 caaaaattgttaaaaaatagatgttcaaatatcattactccttaaaaaac 555  Q
    |||||||| ||| ||||||||||| ||||||||||| ||||| |||||||    
T  37754486 caaaaattattataaaatagatgtacaaatatcatttctcctaaaaaaac 37754437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 48353041 - 48353000
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||||||||||| ||||| |||||||||||    
T  48353041 ttgtcacaaaagttgttaaaaaatggatgtacaaatatcatt 48353000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 49417620 - 49417579
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  49417620 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatt 49417579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 49875841 - 49875800
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||||||||||| |||||| ||||||||||    
T  49875841 ttgtcacaaaagttgttaaaaaatggatgttaaaatatcatt 49875800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 50638375 - 50638416
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| |  ||||||||||||||||||||||    
T  50638375 ttgtcacaaaaattgtcaccaaatagatgttcaaatatcatt 50638416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 8e-26; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 2819432 - 2819356
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2819432 aatgatattttgacaaccaattttcaacaatttttagtgacaacctttttcctctctttttattggacaataacaat 2819356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 19223625 - 19223549
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||  ||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  19223625 aatgatattttgacaatcaattttcaataatttttaatgacaatttttttcctctctttttattggacaataacaat 19223549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 12651214 - 12651290
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| ||||||||| || |||| |||||||  |||||||||| ||| |||||||||||||||||    
T  12651214 aatgatattttgacaaccaatttccaacaacttttggtgacaacttttttcctctttttctattggacaataacaat 12651290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 19223484 - 19223443
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  19223484 ttgtcacaaaaattgttaaaaagtagatgttcaaatatcatt 19223443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 18736180 - 18736106
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 443  Q
    ||||||||||||| || ||||||  || |||||||||||||||   ||||||||| ||||||||||||||||||||    
T  18736180 aatgatattttgataaataattttaaacaatttttagtgacaactcttttcctct-tttttattggacaataacaa 18736106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 43159601 - 43159642
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  43159601 ttgtcacaaaaattgttaaaaaatggttgttcaaatatcatt 43159642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 545
Target Start/End: Original strand, 48814834 - 48814879
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||    
T  48814834 ttgtcacaaaagttgttaaaaaatgaatgttcaaatatcattactc 48814879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 542
Target Start/End: Complemental strand, 2819298 - 2819256
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatta 542  Q
    |||||| |||| |||||||||||| ||||||||||||||||||    
T  2819298 ttgtcataaaagttgttaaaaaatggatgttcaaatatcatta 2819256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Complemental strand, 30061327 - 30061285
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||    
T  30061327 attgtcacaaaaattgtcaaaaaatagttgttaaaatatcatt 30061285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 541
Target Start/End: Original strand, 42598237 - 42598275
Alignment:
Q  503 tcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  42598237 tcacaaaaattgttaaaaaatagttgtacaaatatcatt 42598275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 9792916 - 9792871
Alignment:
Q  400 tttagtgacaatcttttt-cctctctttttattggacaataacaat 444  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||||    
T  9792916 tttagtgacaaccttttttcctctcttcttattggacaataacaat 9792871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 537
Target Start/End: Complemental strand, 21103057 - 21103020
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatat 537  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  21103057 ttgtcacaaaaattgtttaaaaatagttgttcaaatat 21103020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 22638910 - 22638951
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  22638910 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatt 22638951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 33057424 - 33057383
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||| |||||| |||||||||||||| |||||||||||||||    
T  33057424 ttgttacaaaagttgttaaaaaatagttgttcaaatatcatt 33057383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 37899239 - 37899280
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| | ||||| |||||||||||||||||    
T  37899239 ttgtcacaaaaattgtcacaaaatggatgttcaaatatcatt 37899280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 537
Target Start/End: Complemental strand, 40417820 - 40417783
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatat 537  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  40417820 ttgtcacaaaaattgtcaaaaaatagttgttcaaatat 40417783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 48591151 - 48591204
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttt 416  Q
    |||||||||||||||||||||| ||||||||| || |||  ||||||| |||||    
T  48591151 agagtaatgatattttgacaaccaatttccaacaactttgggtgacaacctttt 48591204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 8e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 363 - 443
Target Start/End: Complemental strand, 10729755 - 10729675
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 443  Q
    |||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||    
T  10729755 agagtaatgatattttgacaaccaatttccaacaacttttagtgacaacctttttcctctctttttactggacaataacaa 10729675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 361 - 440
Target Start/End: Original strand, 28982526 - 28982605
Alignment:
Q  361 aaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    |||||||||||||||||||||||| ||||| ||| || |||||||||||| |||||||||||||||||||||||||||||    
T  28982526 aaagagtaatgatattttgacaaccaattttcaacaacttttagtgacaacctttttcctctctttttattggacaataa 28982605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 360 - 444
Target Start/End: Original strand, 34383742 - 34383826
Alignment:
Q  360 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||| ||||||||||||||| | |||||| || || |||||||||||| | |||||||||||||||||||||||||||||||    
T  34383742 aaaagaggaatgatattttgacatccaatttctaacaacttttagtgacaacccttttcctctctttttattggacaataacaat 34383826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 365 - 444
Target Start/End: Original strand, 5456739 - 5456818
Alignment:
Q  365 agtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||||||||||||||||||| ||||||||| || ||||||||| ||  ||||| | ||||||||||||||||||||||||    
T  5456739 agtaatgatattttgacaaccaatttccaacaacttttagtgataacattttttcgctctttttattggacaataacaat 5456818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 2204287 - 2204367
Alignment:
Q  360 aaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    ||||||| | ||||||||| | ||  ||||||||| || |||||||||||| |||||||||||||||||||||||||||||    
T  2204287 aaaagaggagtgatattttaataatcaatttccaacaacttttagtgacaacctttttcctctctttttattggacaataa 2204367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 354450 - 354375
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| ||||||||| || |||||  || ||| ||||||||||| ||||||||||||||||||||    
T  354450 aatgatattttgacaaccaatttccaacaacttttaaggataatttttttcctctc-ttttattggacaataacaat 354375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 500 - 543
Target Start/End: Original strand, 28982665 - 28982708
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattac 543  Q
    ||||||||||| |||||||||||| |||||||||||||||||||    
T  28982665 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcattac 28982708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 545
Target Start/End: Complemental strand, 354321 - 354276
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    ||||||||||| |||||||||||| |||||||||| ||||||||||    
T  354321 ttgtcacaaaagttgttaaaaaatggatgttcaaacatcattactc 354276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 33651065 - 33651024
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  33651065 ttgtcacaaaaattattacaaaatagatgttcaaatatcatt 33651024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 34383884 - 34383925
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  34383884 ttgtcacaaaaattgttaaaaaatgaatgttcaaatatcatt 34383925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 539
Target Start/End: Original strand, 5739790 - 5739829
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 539  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  5739790 ttgtcacaaaagttgttaaaaaatagttgttcaaatatca 5739829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 542
Target Start/End: Original strand, 5456876 - 5456918
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatta 542  Q
    ||||||||||| ||||||||||||  |||||||||||||||||    
T  5456876 ttgtcacaaaagttgttaaaaaatgaatgttcaaatatcatta 5456918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 14817976 - 14817936
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  14817976 ttgtcacaaaaattgt-aaaaaatagttgttcaaatatcatt 14817936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 46859614 - 46859533
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||| |||||| ||||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||    
T  46859614 agagtaatgatatttagacaaccaatttccaacaacttttagtgacagtctttttcctctctttttattagacaataacaat 46859533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 36775288 - 36775208
Alignment:
Q  364 gagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||| ||||||||||||| ||||||||| || |||  ||||||| |||||| |||| |||||||||||||||||||||    
T  36775288 gagtaataatattttgacaaccaatttccaacaactttgggtgacaaccttttttctctttttttattggacaataacaat 36775208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 545
Target Start/End: Complemental strand, 18982564 - 18982519
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||    
T  18982564 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcattactc 18982519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 5466227 - 5466303
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| |||||  || || |||  ||||||| |||||||||| ||| ||||||||||||||||||    
T  5466227 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaat 5466303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 27260603 - 27260677
Alignment:
Q  370 tgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||| | ||||| ||| ||||||||| |||||| |||||||||| || ||||||||  ||||||||    
T  27260603 tgatattttgacatccaattttcaacaatttttagagacaatatttttcctctgttcttattggatgataacaat 27260677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 545
Target Start/End: Complemental strand, 36775114 - 36775072
Alignment:
Q  503 tcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    |||||||| |||||||||||| |||||||||||||||||||||    
T  36775114 tcacaaaagttgttaaaaaatggatgttcaaatatcattactc 36775072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 545
Target Start/End: Complemental strand, 46859463 - 46859418
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||||    
T  46859463 ttgtcacaaaagttgttaaaaaatggatgctcaaatatcattactc 46859418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 38289743 - 38289667
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||| | ||||| ||| || |||||| |||||  ||||| |||| || ||||||||||||||||||    
T  38289743 aatgatattttgacatcaaattttcaacaacttttagagacaactttttttctctattcttattggacaataacaat 38289667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 539
Target Start/End: Complemental strand, 36775151 - 36775112
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatca 539  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  36775151 ttgtcacaaaagttgttaaaaaatggatgttcaaatatca 36775112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 52714926 - 52714968
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||| |||||| ||||| |||||||||||||||||    
T  52714926 attgtcacaaaagttgttataaaatggatgttcaaatatcatt 52714968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 1689436 - 1689395
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||||| ||||||| ||| |||||||||||    
T  1689436 ttgtcacaaaaattgttataaaatagttgtacaaatatcatt 1689395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 545
Target Start/End: Original strand, 11897312 - 11897357
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactc 545  Q
    |||||||||||||||| | |||| || |||||||||||||||||||    
T  11897312 ttgtcacaaaaattgtaacaaaagagttgttcaaatatcattactc 11897357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 32915098 - 32915139
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  32915098 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatt 32915139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 34008225 - 34008184
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  34008225 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatt 34008184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 35414463 - 35414544
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||| ||||||||||||||| | |||||  ||||| |||   ||||||  |||||||||| || ||||||||||||||||||    
T  35414463 agaggaatgatattttgacatccaattttaaataactttggatgacaacttttttcctctattcttattggacaataacaat 35414544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 36230241 - 36230200
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||| ||||||||||| ||||||| |||||||||||||||    
T  36230241 ttgtcataaaaattgttagaaaatagttgttcaaatatcatt 36230200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 444
Target Start/End: Complemental strand, 41411144 - 41411059
Alignment:
Q  359 aaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||||||  ||||||||||||||| |||||||| || | ||||   ||||||  |||||||||  || ||||||||||||||||||    
T  41411144 aaaaagatgaatgatattttgacatctaatttcaaacagttttggatgacaacttttttcctccattcttattggacaataacaat 41411059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 47214253 - 47214212
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||| | |||||||||||||||||||||||    
T  47214253 ttgtcacaaaagttgtcataaaatagatgttcaaatatcatt 47214212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 49065390 - 49065431
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||| ||||| ||||||||| |||||||||||||||    
T  49065390 ttgtcacaaatattgtcaaaaaatagttgttcaaatatcatt 49065431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 362 - 444
Target Start/End: Complemental strand, 3698498 - 3698416
Alignment:
Q  362 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||| ||||||||||  | ||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3698498 aagaggaatgatatttgcataactaatttccaacaatttttagtgacaacttttttcctctctttttattggacaataacaat 3698416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 1816025 - 1816067
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||||||| | |||||||||||||||||||||||    
T  1816025 attgtcacaaaaattgtcacaaaatagatgttcaaatatcatt 1816067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 410
Target Start/End: Original strand, 4272455 - 4272502
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaa 410  Q
    |||| ||||||||||||||||| ||||||||| || ||||||||||||    
T  4272455 agaggaatgatattttgacaaccaatttccaacaacttttagtgacaa 4272502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 444
Target Start/End: Original strand, 7146069 - 7146100
Alignment:
Q  413 tttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||||||||||||||||||    
T  7146069 tttttcctctctttttattggacaataacaat 7146100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 421
Target Start/End: Complemental strand, 54128231 - 54128172
Alignment:
Q  362 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctc 421  Q
    ||||| ||||||||||||||||| |||||  || || |||||||||||| ||||||||||    
T  54128231 aagaggaatgatattttgacaaccaattttaaacaacttttagtgacaacctttttcctc 54128172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 520 - 554
Target Start/End: Original strand, 37249066 - 37249100
Alignment:
Q  520 aaatagatgttcaaatatcattactccttaaaaaa 554  Q
    |||||||||||||||||||||||||||| ||||||    
T  37249066 aaatagatgttcaaatatcattactcctaaaaaaa 37249100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 54909368 - 54909314
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactccttaaaaaa 554  Q
    ||||||||||||||||| || ||| | ||||||||||||||| ||| ||||||||    
T  54909368 ttgtcacaaaaattgtttaataatggttgttcaaatatcatttctctttaaaaaa 54909314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 2999157 - 2999116
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| | ||||| |||||||||||||||||    
T  2999157 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatt 2999116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 433
Target Start/End: Original strand, 4700013 - 4700078
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattgg 433  Q
    |||||||||||||||| ||||||  || || ||||||||| ||| ||||||||||  |||||||||    
T  4700013 aatgatattttgacaattaattttaaacaacttttagtgataatttttttcctcttattttattgg 4700078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 38519838 - 38519797
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| ||||||| | |||||||||||||||    
T  38519838 ttgtcacaaaaattgtcaaaaaatggttgttcaaatatcatt 38519797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 51734556 - 51734601
Alignment:
Q  400 tttagtgacaatctttttc-ctctctttttattggacaataacaat 444  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||||    
T  51734556 tttagtgacaatctttttttctctcttcttattggacaataacaat 51734601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 53654776 - 53654817
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| | | |||||||||||||||||||||||    
T  53654776 ttgtcacaaaaattatcataaaatagatgttcaaatatcatt 53654817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 16594271 - 16594344
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| ||||||||||   ||||||||||||  | ||||||||||||||||||||||||||||||    
T  16594271 aatgatattttgacaaccaatttccaat---ttttagtgacaacttatttcctctctttttattggacaataacaat 16594344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 25603560 - 25603634
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| |||||| || |||||||||||| ||  ||||||  ||||||||||||||||||||||||    
T  25603560 aatgatattttgacaaccaatttctaacaatttttagtgataacatttttc--ctctttttattggacaataacaat 25603634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 358 - 440
Target Start/End: Complemental strand, 13739625 - 13739543
Alignment:
Q  358 aaaaaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    ||||||||| ||||||||||||||||| || ||  || || |||||| ||||| |||||| ||  ||||||||||||||||||    
T  13739625 aaaaaagaggaatgatattttgacaaccaactttaaacaacttttagggacaaccttttttcttcctttttattggacaataa 13739543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 16594402 - 16594443
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| |||||||||||| |||||||||||||||||    
T  16594402 ttgtcacaaaagttgttaaaaaatggatgttcaaatatcatt 16594443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 554
Target Start/End: Complemental strand, 266932 - 266896
Alignment:
Q  518 aaaaatagatgttcaaatatcattactccttaaaaaa 554  Q
    |||||||| ||||||||||||||||||||||||||||    
T  266932 aaaaatagttgttcaaatatcattactccttaaaaaa 266896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 16967370 - 16967446
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||| ||||||| ||| || |||||| |||||  |||||||||| || ||||||||  ||||||||    
T  16967370 aatgatattttgacatctaattttcaacaacttttagggacaacatttttcctctattcttattggatgataacaat 16967446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 506 - 541
Target Start/End: Original strand, 14062865 - 14062900
Alignment:
Q  506 caaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||| ||||||||||||||||||||||||||||||    
T  14062865 caaaagttgttaaaaaatagatgttcaaatatcatt 14062900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 541
Target Start/End: Complemental strand, 13309924 - 13309886
Alignment:
Q  503 tcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  13309924 tcacaaaaattgtcaaaaaatagttgttcaaatatcatt 13309886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 26009128 - 26009205
Alignment:
Q  362 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    ||||| ||||||||||||||||  |||||  || || |||||||||||| | ||||||||| || ||||||||||||||    
T  26009128 aagaggaatgatattttgacaatcaattttaaacaacttttagtgacaa-ccttttcctcttttcttattggacaataa 26009205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 32872923 - 32872965
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||| |||| ||||||||| |||||||||||||||    
T  32872923 attgtcacaaaagttgtcaaaaaatagttgttcaaatatcatt 32872965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 43214084 - 43214126
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||| |||||  |||||||||||||||||||||||    
T  43214084 attgtcacaaaagttgttgcaaaatagatgttcaaatatcatt 43214126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 5721844 - 5721884
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| ||||||||| |||||||||||||||    
T  5721844 ttgtcacaaaaattgt-aaaaaatagttgttcaaatatcatt 5721884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 29499664 - 29499745
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||| ||||||||||||||| | |||||  || ||||||||| || |||||||||||||  || ||||||||  ||||||||    
T  29499664 agaggaatgatattttgacatccaatttttaacaatttttagggataatctttttcctcaattcttattggatgataacaat 29499745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 40039335 - 40039294
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| | ||||||||| |||||||||||||||    
T  40039335 ttgtcacaaaaattatcaaaaaatagttgttcaaatatcatt 40039294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 40649636 - 40649567
Alignment:
Q  375 ttttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||||||||| ||||| ||| ||||||||||||||| ||||||||||| |||||||||||||||| ||||    
T  40649636 ttttgacaaccaattttcaacaatttttagtgacaacctttttcctctatttttattggacaatagcaat 40649567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 368 - 443
Target Start/End: Complemental strand, 36023261 - 36023186
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaa 443  Q
    ||||||||||||||||  |||||  |||||||||  |||||||||||||||||| ||||| |||||||||||||||    
T  36023261 aatgatattttgacaatcaattttaaataattttgggtgacaatctttttcctcccttttaattggacaataacaa 36023186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 363 - 428
Target Start/End: Complemental strand, 44952811 - 44952746
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctcttttt 428  Q
    |||| ||||||||||||||||  |||||| || |||||||||||||||||||||| ||||||||||    
T  44952811 agaggaatgatattttgacaatcaatttctaacaatttttagtgacaatcttttttctctcttttt 44952746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 500 - 544
Target Start/End: Original strand, 21514963 - 21515007
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattact 544  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  21514963 ttgtcacaaaaattgttaaaaaatggatgttcaaatatcattact 21515007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 12171982 - 12172059
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctcttttta-ttggacaataacaat 444  Q
    ||||||||||||||||| |||||  || || |||||||||||| |||||||||| ||| ||| |||||||||||||||    
T  12171982 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 12172059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 12416410 - 12416487
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctcttttta-ttggacaataacaat 444  Q
    ||||||||||||||||| |||||  || || |||||||||||| |||||||||| ||| ||| |||||||||||||||    
T  12416410 aatgatattttgacaaccaattttaaacaaattttagtgacaacctttttcctcccttcttatttggacaataacaat 12416487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 503 - 541
Target Start/End: Original strand, 31266263 - 31266301
Alignment:
Q  503 tcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  31266263 tcacaaaaattgttaaaaaatggatgttcaaatatcatt 31266301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 40649495 - 40649454
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||||||||||||||  ||||||||||||||||    
T  40649495 ttgtcacaaaaattgttaaaaaatgaatgttcaaatatcatt 40649454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 413 - 444
Target Start/End: Original strand, 31266171 - 31266202
Alignment:
Q  413 tttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||||||||||||||||||    
T  31266171 tttttcctctctttttattggacaataacaat 31266202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 362 - 440
Target Start/End: Original strand, 7612095 - 7612173
Alignment:
Q  362 aagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    ||||| ||||||||||||||||| |||||  || || |||||| |||||||||||| ||  ||| ||||| ||||||||    
T  7612095 aagaggaatgatattttgacaaccaattttaaacaacttttagggacaatcttttttcttccttcttattagacaataa 7612173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Complemental strand, 18651416 - 18651374
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||| ||||||  ||||||||||||||||||||||    
T  18651416 attgtcacaaaagttgttaccaaatagatgttcaaatatcatt 18651374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 42733590 - 42733632
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||||| |||||| | |||||||||||||||    
T  42733590 attgtcacaaaaattgtttaaaaatggttgttcaaatatcatt 42733632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 503 - 541
Target Start/End: Original strand, 45406013 - 45406051
Alignment:
Q  503 tcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  45406013 tcacaaaaattattaaaaaatagttgttcaaatatcatt 45406051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 31596993 - 31596952
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| | ||||| |||||||||||||||||    
T  31596993 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatt 31596952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 36023129 - 36023088
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||| |||||||||||||||||  |||||||||||||||    
T  36023129 ttgtcaccaaaattgttaaaaaataattgttcaaatatcatt 36023088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 440
Target Start/End: Original strand, 37792050 - 37792126
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    |||| ||||||||||| |||||||||||  |||||||||||| ||||| |||||| ||  ||| ||||| ||||||||    
T  37792050 agagaaatgatattttcacaactaattttaaataatttttagggacaa-cttttttcttccttcttattagacaataa 37792126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 42733490 - 42733535
Alignment:
Q  400 tttagtgacaatctttt-tcctctctttttattggacaataacaat 444  Q
    |||||||| |||||||| ||||||||| ||||||||||||||||||    
T  42733490 tttagtgataatcttttttcctctcttcttattggacaataacaat 42733535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 44064402 - 44064361
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||| ||||||||||| | |||||||||||||||||||||||    
T  44064402 ttgttacaaaaattgtcacaaaatagatgttcaaatatcatt 44064361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 361 - 440
Target Start/End: Complemental strand, 15260491 - 15260412
Alignment:
Q  361 aaagagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataa 440  Q
    |||||| ||||||||||| ||||| |||||  |||||||||||| || ||||||||| ||  ||||||||||||||||||    
T  15260491 aaagaggaatgatattttaacaaccaattttaaataatttttagggataatcttttttcttcctttttattggacaataa 15260412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 8427597 - 8427556
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  8427597 ttgtcacaaaaattgtcaaaaaatagatgttcaaatatcatt 8427556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 4384099 - 4384046
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactccttaaaaaa 554  Q
    |||||||||||||||| | ||||||||||||||||||||||| || |||||||||    
T  4384099 ttgtcacaaaaattgt-acaaaatagatgttcaaatatcatttcttcttaaaaaa 4384046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 549
Target Start/End: Complemental strand, 15269906 - 15269857
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactcctta 549  Q
    |||||||||||||||| | ||||| ||||||||||||||||| |||||||    
T  15269906 ttgtcacaaaaattgtcataaaatggatgttcaaatatcatttctcctta 15269857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 22526020 - 22526061
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||| ||||||| |||||||||||||||||    
T  22526020 ttgtcacaaaaattgtcaaaaaatggatgttcaaatatcatt 22526061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 549
Target Start/End: Complemental strand, 25881589 - 25881540
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcattactcctta 549  Q
    ||||||||||||||||   ||||||||||||||||||||||| |||||||    
T  25881589 ttgtcacaaaaattgtcgcaaaatagatgttcaaatatcatttctcctta 25881540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 499 - 541
Target Start/End: Original strand, 26481115 - 26481157
Alignment:
Q  499 attgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||| |||||||||||||  |||||||||||||||    
T  26481115 attgtcacaaaagttgttaaaaaataattgttcaaatatcatt 26481157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 12498662 - 12498703
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    ||||||||||||||||||  |||| |||||||||||||||||    
T  12498662 ttgtcacaaaaattgttaccaaatggatgttcaaatatcatt 12498703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 18876948 - 18876989
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| |||  ||||||||||||||||||||||    
T  18876948 ttgtcacaaaaattattaccaaatagatgttcaaatatcatt 18876989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 444
Target Start/End: Original strand, 36003451 - 36003532
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||| |||||||||||||||  ||||||| |||||||||  |||||||  ||||| |||  || |||||| |||||||||||    
T  36003451 agaggaatgatattttgacatttaatttcaaataattttgggtgacaactttttttctccattcttattgaacaataacaat 36003532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 36517241 - 36517200
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| | | |||||||||||||||||||||||    
T  36517241 ttgtcacaaaaattatcataaaatagatgttcaaatatcatt 36517200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 40210094 - 40210135
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| || |||||||| |||||||||||||||    
T  40210094 ttgtcacaaaaattatttaaaaatagttgttcaaatatcatt 40210135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 41317381 - 41317300
Alignment:
Q  363 agagtaatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    |||| ||||||||||||||| | ||||| ||| || |||| | |||||||||||| |||| || |||||| ||||| |||||    
T  41317381 agaggaatgatattttgacatccaattttcaacaactttttgggacaatcttttttctctattcttattgaacaatgacaat 41317300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 45259311 - 45259352
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||||||| ||||| ||||| |||||||||||    
T  45259311 ttgtcacaaaaattgttagaaaatggatgtacaaatatcatt 45259352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 444
Target Start/End: Original strand, 1093 - 1169
Alignment:
Q  368 aatgatattttgacaactaatttccaataatttttagtgacaatctttttcctctctttttattggacaataacaat 444  Q
    ||||||||||||||||| |||||  || || |||  ||||||| |||||||||| ||| ||||||||||||||||||    
T  1093 aatgatattttgacaaccaattttaaacaactttgggtgacaacctttttcctcacttcttattggacaataacaat 1169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1956 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1956
Description:

Target: scaffold1956; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 541
Target Start/End: Complemental strand, 816 - 775
Alignment:
Q  500 ttgtcacaaaaattgttaaaaaatagatgttcaaatatcatt 541  Q
    |||||||||||||| | ||||||| |||||||||||||||||    
T  816 ttgtcacaaaaattatcaaaaaatggatgttcaaatatcatt 775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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