View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_high_21 (Length: 227)
Name: NF14197_high_21
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 6 - 227
Target Start/End: Complemental strand, 4619615 - 4619378
Alignment:
| Q |
6 |
atacacttctcagaaaaaactaaaatctgcagtgaagctttaaaaacaggttacaacggccacatt----------------gacggtcaaattttgatt |
89 |
Q |
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| T |
4619615 |
atacacttctcagaaaaaactaaaatctgcagtgaagctttaaaaacaggttacaacggccacattaaggtcacggacattggacggtcaaattttgatt |
4619516 |
T |
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| Q |
90 |
tcctttaaaaatggaaattacgaagtttgaaatatggatcatccaatttgatcggacggtcatgcagtcactcactgtgtaaatgcatgtagtaagtgat |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4619515 |
tcctttaaaaatggaaattacgaagtttgaaatatggatcatccaatttgatcggacggtcatgcagtcactcactgtataaatgcatgtagtaagtgat |
4619416 |
T |
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| Q |
190 |
gacagagaatcttaaaaaataactgaggagggtaaata |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
4619415 |
gacagagaatcttaaaaaataactgaggagggtaaata |
4619378 |
T |
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