View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_high_8 (Length: 390)
Name: NF14197_high_8
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 29826698 - 29827046
Alignment:
| Q |
15 |
actgagagatcacgcagatcacaacatttgtgatgcttgtaggaaacaaagcagacaagcgtcatttgcgatcggtttcgacaaaggaaggagcaaaact |
114 |
Q |
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| T |
29826698 |
actgagagatcacgcagatcacaacatttgtgatgcttgtaggaaacaaagcagacaagcgtcatttgcgatcggtttcgacaaaggaaggagcaaaact |
29826797 |
T |
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| Q |
115 |
tgctgaacaggaggatatatttttcatggaaacatctgccctagaatccttgaagttgaaagtgtattcataaaagtgttgacacagatctatggtctta |
214 |
Q |
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| T |
29826798 |
tgctgaacaggaggatatatttttcatggaaacatctgccctagaatccttgaagttgaaagtgtattcacaaaagtgttgacacagatctatggtctta |
29826897 |
T |
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| Q |
215 |
taaacaagaaggcccttgatattgatattggtgatttacctaaagagcatacaattaaggttgggtttcgtggtcatgtatcagctctgctgaagaaagc |
314 |
Q |
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| T |
29826898 |
taaacaagaaggcccttgatattgatattggtgatttacctaaagaacatacaattaaggttgggtttcgt-atgttgtaaaag-tct-----------c |
29826984 |
T |
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| Q |
315 |
tggatttagtttggcttgagtatgttgtaaaattctctgtattttttactatgaaatttatg |
376 |
Q |
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| T |
29826985 |
tgtatttagtttggcttgagtatgttgtaaaagtctctgtattttttactatgaaatttatg |
29827046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 34701567 - 34701792
Alignment:
| Q |
16 |
ctgagagatcacgcagatcacaacat--ttgtgatgcttgtaggaaacaaagcagacaagcgtcatttgcgatcggtttcgacaaaggaaggagcaaaac |
113 |
Q |
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| T |
34701567 |
ctgagagatcacacagatgccaacatcgtcgtgatgcttgtaggcaacaaagcagacctgcgtcatttacgagcagtttcgaccgaagatgctacaagtt |
34701666 |
T |
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| Q |
114 |
ttgctgaacaggaggatatatttttcatggaaacatctgccctagaatccttgaa-gttgaaagtgtattcataaaagtgttgacacagatctatggtct |
212 |
Q |
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|| |||||| |||| ||| || ||| ||||| ||||||||||| || |||||||| |||||||||| |||| |||||||||| ||||||||| || | |
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| T |
34701667 |
tttctgaacgggagaatacatattttatggagacatctgcccttgagtccttgaacgttgaaagtgctttcaccgaagtgttgacgcagatctatcgtgt |
34701766 |
T |
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| Q |
213 |
tataaacaagaaggcccttgatattg |
238 |
Q |
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| T |
34701767 |
ggtaagcaaaaaggcccttgagattg |
34701792 |
T |
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