View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_low_11 (Length: 342)
Name: NF14197_low_11
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 157 - 336
Target Start/End: Complemental strand, 26946198 - 26946019
Alignment:
| Q |
157 |
gtgatgatgatgttgaatgtgtatttgcgaagtttacataactgttttcgttagtattgagtgtgtaacttcttaccaaaaaattatgcatgagacacga |
256 |
Q |
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| T |
26946198 |
gtgatgatgatgttgaatgtgtatttgcgaagtttacataactgttttcgttagtattgagtgtgtaacttcttaccaaaaaattatgcatgagacacga |
26946099 |
T |
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| Q |
257 |
aagacatgtgattcattctcacggctcgtcttctcaagtacgagtgaagtgaaattactatggtgtaatggaatctgtgc |
336 |
Q |
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| T |
26946098 |
aagacatgtgattcattctcacggctcgtgttctcaagtacgagtgaagtgaaattactatggtgtaatggaatctgtgc |
26946019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 26946338 - 26946248
Alignment:
| Q |
17 |
gctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
107 |
Q |
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| T |
26946338 |
gctactgttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
26946248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 107
Target Start/End: Complemental strand, 26953932 - 26953848
Alignment:
| Q |
23 |
gttgtttgtgattacatgagctatgtcttcatgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
107 |
Q |
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| T |
26953932 |
gttgtttgtgattacatgaccttaacgttcatgtttctgtcagttgttacatccaatataattgctactgcccttgctaaacagg |
26953848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 26991232 - 26991178
Alignment:
| Q |
53 |
atgtttctatcagttgctacttccaatatggttgctactgccctagctaaacagg |
107 |
Q |
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| T |
26991232 |
atgtttctgtcgattgctacttcgaatatggttgctactgcccttgctaaacagg |
26991178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 26976240 - 26976281
Alignment:
| Q |
66 |
ttgctacttccaatatggttgctactgccctagctaaacagg |
107 |
Q |
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| T |
26976240 |
ttgctacttcgaatatggttgctactgcacttgctaaacagg |
26976281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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