View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14197_low_12 (Length: 314)

Name: NF14197_low_12
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14197_low_12
NF14197_low_12
[»] chr8 (5 HSPs)
chr8 (125-231)||(26545861-26545965)
chr8 (228-268)||(41602586-41602626)
chr8 (228-264)||(7011232-7011268)
chr8 (228-272)||(18093013-18093057)
chr8 (228-272)||(18093245-18093289)
[»] chr4 (2 HSPs)
chr4 (127-240)||(9942328-9942442)
chr4 (145-255)||(9946822-9946934)
[»] chr5 (4 HSPs)
chr5 (184-236)||(4937004-4937056)
chr5 (216-263)||(11168128-11168175)
chr5 (235-272)||(36400803-36400840)
chr5 (219-263)||(26364700-26364744)
[»] chr3 (2 HSPs)
chr3 (219-263)||(2181410-2181454)
chr3 (228-264)||(35495062-35495098)
[»] chr6 (2 HSPs)
chr6 (225-263)||(11985003-11985041)
chr6 (225-271)||(11985200-11985246)
[»] chr2 (1 HSPs)
chr2 (218-272)||(16238206-16238260)
[»] chr1 (3 HSPs)
chr1 (225-271)||(39694157-39694203)
chr1 (163-191)||(84268-84296)
chr1 (219-263)||(11932781-11932825)
[»] chr7 (2 HSPs)
chr7 (196-273)||(48106252-48106329)
chr7 (228-272)||(31530078-31530122)
[»] scaffold0001 (1 HSPs)
scaffold0001 (228-272)||(405169-405213)


Alignment Details
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Complemental strand, 26545965 - 26545861
Alignment:
Q  125 ggcttaattatagtattggtcccctaagtatccaaatattgcaattttggctctctaacaaaataaatacttttgagccctctatatttaccccctttta 224  Q
    ||||||||||  || |||| ||||||||||||||||| |||| ||||||| ||| ||| ||||||| |||||| ||| ||||||| |||||||||||||     
T  26545965 ggcttaattactgttttggccccctaagtatccaaatgttgcgattttgg-tct-taaaaaaataactactttcgagtcctctatgtttacccccttttg 26545868  T
Q  225 caatttt 231  Q
    |||||||    
T  26545867 caatttt 26545861  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 268
Target Start/End: Original strand, 41602586 - 41602626
Alignment:
Q  228 ttttggccccctaagccaattttgactcagtcaacgtacac 268  Q
    |||||||||||||||||||||||||||| ||||||| ||||    
T  41602586 ttttggccccctaagccaattttgactcggtcaacgcacac 41602626  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 7011268 - 7011232
Alignment:
Q  228 ttttggccccctaagccaattttgactcagtcaacgt 264  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  7011268 ttttggccccctaggccaattttgactcggtcaacgt 7011232  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 18093013 - 18093057
Alignment:
Q  228 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 272  Q
    ||||||||||||||| |||||||||||| ||||||| ||| ||||    
T  18093013 ttttggccccctaagtcaattttgactcggtcaacgcacatgtgg 18093057  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 18093289 - 18093245
Alignment:
Q  228 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 272  Q
    ||||||||||||| | |||||||||||| ||||||| ||||||||    
T  18093289 ttttggccccctaggtcaattttgactcggtcaacgcacacgtgg 18093245  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 9942328 - 9942442
Alignment:
Q  127 cttaattatagtattggtcccctaagtatccaaatattgcaattttggctctctaaca-aaataaatacttttgagccctctatatttacccccttttac 225  Q
    ||||||||  || |||| ||||||||||||||||| |||  |||||||| | |||| | |||||| |||||| ||||| ||||| ||||||| ||||| |    
T  9942328 cttaattactgttttggccccctaagtatccaaatgttgtgattttggccccctaaaagaaataactactttcgagccttctatgtttaccctcttttgc 9942427  T
Q  226 aattttggcccccta 240  Q
    |||||| ||||||||    
T  9942428 aattttagcccccta 9942442  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 9946934 - 9946822
Alignment:
Q  145 cccctaagtatccaaatattgcaattttggctctctaacaa--aataaatacttttgagccctctatatttacccccttttacaattttggccccctaag 242  Q
    |||||||||||  |||| |||||||||| |  | |||| ||  ||||| |||||||||||||||||| |||| ||| |||| ||||||| ||||| ||      
T  9946934 cccctaagtatttaaatgttgcaatttttgtaccctaaaaaataataactacttttgagccctctatgtttatccctttttgcaattttagccccatagc 9946835  T
Q  243 ccaattttgactc 255  Q
     ||||||||||||    
T  9946834 tcaattttgactc 9946822  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 4937004 - 4937056
Alignment:
Q  184 aaaataaatacttttgagccctctatatttacccccttttacaattttggccc 236  Q
    ||||||| |||||||||||||||||| ||||||| |||||||| |||||||||    
T  4937004 aaaataactacttttgagccctctatgtttaccctcttttacagttttggccc 4937056  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 11168175 - 11168128
Alignment:
Q  216 ccccttttacaattttggccccctaagccaattttgactcagtcaacg 263  Q
    |||||||| |||||||||||||| ||||||||||||||  ||||||||    
T  11168175 ccccttttgcaattttggccccccaagccaattttgaccaagtcaacg 11168128  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Complemental strand, 36400840 - 36400803
Alignment:
Q  235 cccctaagccaattttgactcagtcaacgtacacgtgg 272  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  36400840 cccctaggccaattttgactcagtcaacgcacacgtgg 36400803  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 26364700 - 26364744
Alignment:
Q  219 cttttacaattttggccccctaagccaattttgactcagtcaacg 263  Q
    |||| ||| |||||||||||||| ||||||||||||| |||||||    
T  26364700 ctttgacagttttggccccctaaaccaattttgactcggtcaacg 26364744  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 2181410 - 2181454
Alignment:
Q  219 cttttacaattttggccccctaagccaattttgactcagtcaacg 263  Q
    |||| |||||||||||||||||| ||||||||||||| |||||||    
T  2181410 ctttgacaattttggccccctaaaccaattttgactcggtcaacg 2181454  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 35495098 - 35495062
Alignment:
Q  228 ttttggccccctaagccaattttgactcagtcaacgt 264  Q
    |||||||||||||  ||||||||||||||||||||||    
T  35495098 ttttggccccctagaccaattttgactcagtcaacgt 35495062  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 263
Target Start/End: Original strand, 11985003 - 11985041
Alignment:
Q  225 caattttggccccctaagccaattttgactcagtcaacg 263  Q
    ||||||||||||||||| ||||||||||| |||||||||    
T  11985003 caattttggccccctaacccaattttgacacagtcaacg 11985041  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 11985246 - 11985200
Alignment:
Q  225 caattttggccccctaagccaattttgactcagtcaacgtacacgtg 271  Q
    |||||||||||||| |||||||||||||| ||||||||  |||||||    
T  11985246 caattttggccccccaagccaattttgacccagtcaacagacacgtg 11985200  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 16238206 - 16238260
Alignment:
Q  218 ccttttacaattttggccccctaagccaattttgactcagtcaacgtacacgtgg 272  Q
    ||||| ||| ||||||||||| | |||||||||||||| ||||||| ||||||||    
T  16238206 cctttgacagttttggcccccaaggccaattttgactcggtcaacgcacacgtgg 16238260  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 271
Target Start/End: Complemental strand, 39694203 - 39694157
Alignment:
Q  225 caattttggccccctaagccaattttgactcagtcaacgtacacgtg 271  Q
    |||||||||||||| | |||||||||||| ||||||||| |||||||    
T  39694203 caattttggccccccacgccaattttgacccagtcaacggacacgtg 39694157  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 191
Target Start/End: Complemental strand, 84296 - 84268
Alignment:
Q  163 ttgcaattttggctctctaacaaaataaa 191  Q
    |||||||||||||||||||||||||||||    
T  84296 ttgcaattttggctctctaacaaaataaa 84268  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 11932825 - 11932781
Alignment:
Q  219 cttttacaattttggccccctaagccaattttgactcagtcaacg 263  Q
    |||| |||||||||||||| ||| ||||||||||||| |||||||    
T  11932825 ctttgacaattttggccccataaaccaattttgactcggtcaacg 11932781  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 273
Target Start/End: Original strand, 48106252 - 48106329
Alignment:
Q  196 tttgagccctctatatttacccccttttacaattttggccccctaagccaattttgactcagtcaacgtacacgtggc 273  Q
    ||||| ||| |||| |||| |||||||| |||||||||| |||    ||||||||||| ||||||||| |||||||||    
T  48106252 tttgatccccctatgtttagccccttttgcaattttggcaccccggaccaattttgacccagtcaacgcacacgtggc 48106329  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 31530078 - 31530122
Alignment:
Q  228 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 272  Q
    ||||||||||| | |||||||||||||| ||||||| ||||||||    
T  31530078 ttttggcccccaatgccaattttgactcggtcaacgcacacgtgg 31530122  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 272
Target Start/End: Original strand, 405169 - 405213
Alignment:
Q  228 ttttggccccctaagccaattttgactcagtcaacgtacacgtgg 272  Q
    ||||||||||| | |||||||||||||||| ||||| ||||||||    
T  405169 ttttggccccccaggccaattttgactcagccaacgcacacgtgg 405213  T

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