View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_low_15 (Length: 258)
Name: NF14197_low_15
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 10981961 - 10982183
Alignment:
| Q |
18 |
accaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgcttgattccatgaaaactacg |
117 |
Q |
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| T |
10981961 |
accaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgcttgattccatgaaaactacg |
10982060 |
T |
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| Q |
118 |
agggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatggtattccat |
217 |
Q |
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| T |
10982061 |
agggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagctttgaatgaaggattatttattcctgatggtattccat |
10982160 |
T |
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| Q |
218 |
ccattttctgtactggacctttg |
240 |
Q |
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| T |
10982161 |
ccattttctgtactggacctttg |
10982183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 10968099 - 10968229
Alignment:
| Q |
109 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatg |
208 |
Q |
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| T |
10968099 |
aaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcctgatg |
10968198 |
T |
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| Q |
209 |
g---tattccatccattttctgtactggacc |
236 |
Q |
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| T |
10968199 |
gaactactccatccattttttgtattggacc |
10968229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 240
Target Start/End: Original strand, 11002265 - 11002413
Alignment:
| Q |
95 |
tgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggatt |
194 |
Q |
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| T |
11002265 |
tgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaaggggt |
11002364 |
T |
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| Q |
195 |
atttattcctaatgg---tattccatccattttctgtactggacctttg |
240 |
Q |
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| T |
11002365 |
atgtgttcctgatggaacaactccatccattttttgtattggacctttg |
11002413 |
T |
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