View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_low_17 (Length: 246)
Name: NF14197_low_17
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_17 |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 7580419 - 7580648
Alignment:
| Q |
17 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaaatccagtcgactcaagggtttcaaactaaagaacgtcatgtttagaagtga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
7580419 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaaatccagtcgactcaagggtttcaaactaaagaacgtcatgtttcgacgtga |
7580518 |
T |
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| Q |
117 |
tttaggcactaggttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttcttctacgagaaggtattgttgttacagaaaaa |
216 |
Q |
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| T |
7580519 |
tttaggcactaggttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttcttttacgagaaggtattgttgttacagaaaaa |
7580618 |
T |
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| Q |
217 |
ccaattgaagtggctgactggcgccaaacc |
246 |
Q |
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| T |
7580619 |
ccaattgaagtggctgactggcgccaaacc |
7580648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 7100821 - 7100780
Alignment:
| Q |
17 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtt |
58 |
Q |
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| T |
7100821 |
aagatgcggtgtatgtgcttgatgatatccttgatgaatgtt |
7100780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 246
Target Start/End: Complemental strand, 7100725 - 7100598
Alignment:
| Q |
119 |
taggcactaggttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttcttctacgagaaggtattgttgttacagaaaaacc |
218 |
Q |
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| T |
7100725 |
taggcagtaggttgaatgaaattactagcagactcagtcatattgccgaaggtaagaagaattttatgctacgagaaggtgttactgttacgcaacaacc |
7100626 |
T |
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| Q |
219 |
aattgaagtggctgactggcgccaaacc |
246 |
Q |
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| T |
7100625 |
aactgaagtggctgaatggcgccaaacc |
7100598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 246
Target Start/End: Complemental strand, 17984217 - 17984061
Alignment:
| Q |
93 |
aaagaacgtcatgtttagaagtgatttaggcactaggttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttcttctacga |
192 |
Q |
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| T |
17984217 |
aaagaacttcatgtttcgccgtgacataggcagtaggttgaaagagattgcaagtagactcgattatattgctgaaggtaagaagaattttatgctacga |
17984118 |
T |
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| Q |
193 |
gaaggtattgttgttacagaaaa---accaattgaagtggctgactggcgccaaacc |
246 |
Q |
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| T |
17984117 |
gaaggtattactgttacggaaaaattaccaagtgaagtggctgaatggcgccaaacc |
17984061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 245
Target Start/End: Complemental strand, 30476671 - 30476553
Alignment:
| Q |
127 |
aggttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttcttctacgagaaggtattgttgttacagaaaaaccaattgaag |
226 |
Q |
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| T |
30476671 |
aggttgaaagaaattacaaggagattcgatcaaattgctgaaagtaaagacaagtttcttttacgagagggtgtcgttgttagggaaaggccaaatgaag |
30476572 |
T |
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| Q |
227 |
tggctgactggcgccaaac |
245 |
Q |
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| T |
30476571 |
ttgctgaatggcgccaaac |
30476553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 17984305 - 17984252
Alignment:
| Q |
17 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaaatcca |
70 |
Q |
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| T |
17984305 |
aagatgcggtgtttgtgcttgatgatatcctagatgaatgttcgatcaaatcca |
17984252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 29854726 - 29854678
Alignment:
| Q |
17 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaa |
65 |
Q |
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| T |
29854726 |
aagatgctgtttatgtgctcgatgatatccttgatgagtgttcaatcaa |
29854678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 30401492 - 30401451
Alignment:
| Q |
17 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtt |
58 |
Q |
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| T |
30401492 |
aagatgctgtttatgtgctcgatgatatccttgatgagtgtt |
30401451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 30329543 - 30329571
Alignment:
| Q |
28 |
tatgtgcttgatgatatccttgatgagtg |
56 |
Q |
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| T |
30329543 |
tatgtgcttgatgatatccttgatgagtg |
30329571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 30437213 - 30437153
Alignment:
| Q |
17 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaaatccagtcgact |
77 |
Q |
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| T |
30437213 |
aagatgctgtttatgtgctcgatgacatccttgatgagtgttcgatcaagtctagtcgact |
30437153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 30675979 - 30676027
Alignment:
| Q |
17 |
aagatgcggtgtatgtgcttgatgatatccttgatgagtgtttaatcaa |
65 |
Q |
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| T |
30675979 |
aagatgctgtttatgtgctcgatgatatccttgatgagtattcaatcaa |
30676027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 245
Target Start/End: Complemental strand, 13617899 - 13617777
Alignment:
| Q |
126 |
taggttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttc-ttctacgagaaggtattgttgttacagaaaa--accaatt |
222 |
Q |
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| T |
13617899 |
taggttgaaaaagattgcaagcaaaattgatcaaattgctaaaagtaagaacaagtttctttctatgagaaggtattactgttagagaaaattaccaatt |
13617800 |
T |
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| Q |
223 |
gaagtggctgactggcgccaaac |
245 |
Q |
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| T |
13617799 |
gaagtggttgaatggtgccaaac |
13617777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 52353254 - 52353185
Alignment:
| Q |
130 |
ttgaaagagattgcaagcagactcaaccaaattgctgaaaataagaacaagtttcttctacgagaaggta |
199 |
Q |
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| T |
52353254 |
ttgaaagaaattacaaggagattcgatcaagttgctgaaaggaagaacaagtttcttctacgagagggta |
52353185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 25292649 - 25292698
Alignment:
| Q |
28 |
tatgtgcttgatgatatccttgatgagtgtttaatcaaatccagtcgact |
77 |
Q |
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| T |
25292649 |
tatgtgctcgatgatatccttgatgagtgattgatcaaatctagtcgact |
25292698 |
T |
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