View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_low_18 (Length: 245)
Name: NF14197_low_18
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_18 |
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| [»] chr2 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 28 - 245
Target Start/End: Original strand, 36603527 - 36603744
Alignment:
| Q |
28 |
agaatatgtacagaagaatattcttctttcacctccacctagctttcagcgtggcactccttcccaatacctaggagtttacccatgtcctttatgggaa |
127 |
Q |
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| T |
36603527 |
agaatatgtacagaagaatattcttctttcacctccacctagctttcagcgtggcactccttcccaatacctaggagcttacccatgtcctttatgggaa |
36603626 |
T |
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| Q |
128 |
caaatccaacgtcaagattaccacaataaatgtccaagaacttttccctacttggccatattccagcttcaaatacaattctagccaacattttcacatc |
227 |
Q |
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| T |
36603627 |
caaatccaacatcaagattaccacaataaatgtccaagaacttttccctacttggccatattccagcttcaaatacaattctagccaacattttcacatc |
36603726 |
T |
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| Q |
228 |
aaagttcactatcccttt |
245 |
Q |
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| T |
36603727 |
aaagttcactatcccttt |
36603744 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 18647766 - 18647689
Alignment:
| Q |
168 |
cttttccctacttggccatattccagcttcaaatacaattctagccaacattttcacatcaaagttcactatcccttt |
245 |
Q |
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| T |
18647766 |
cttttccttgcttggccatattccagcttcaaatccaactctaacaaccatcttcacatcaaaattcaccaccccttt |
18647689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 245
Target Start/End: Complemental strand, 18708596 - 18708519
Alignment:
| Q |
168 |
cttttccctacttggccatattccagcttcaaatacaattctagccaacattttcacatcaaagttcactatcccttt |
245 |
Q |
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| T |
18708596 |
cttttccttgcttggccatattccagcttcaaatccaactctaacaaccatcttcacatcaaaattcaccaccccttt |
18708519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 18669745 - 18669677
Alignment:
| Q |
168 |
cttttccctacttggccatattccagcttcaaatacaattctagccaacattttcacatcaaagttcac |
236 |
Q |
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| T |
18669745 |
cttttccttgcttggccatattccagcttcaaatccaactctaacaaccatcttcacatcaaaattcac |
18669677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 18736066 - 18735998
Alignment:
| Q |
168 |
cttttccctacttggccatattccagcttcaaatacaattctagccaacattttcacatcaaagttcac |
236 |
Q |
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| T |
18736066 |
cttttccttgcttggccatattccagcttcaaatccaactctaacaaccatcttcacatcaaaattcac |
18735998 |
T |
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