View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14197_low_2 (Length: 643)
Name: NF14197_low_2
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_2 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 484
Target Start/End: Original strand, 42519087 - 42519560
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42519087 |
cagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
42519186 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
42519187 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcataaacatctggaaagaacttcattaagaatggatcc |
42519286 |
T |
|
| Q |
211 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42519287 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
42519386 |
T |
|
| Q |
311 |
aaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaatgatg |
410 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42519387 |
aaatggaaaaaagaagaaaataaattagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaatgatg |
42519486 |
T |
|
| Q |
411 |
aacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgtt |
484 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42519487 |
aacaccctaatggtgaattttcctggatattcttttccagagccttgtgctatgtaacctccagccattgtgtt |
42519560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 11 - 489
Target Start/End: Original strand, 1240866 - 1241333
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1240866 |
cagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
1240965 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaaga----atgg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1240966 |
tagtgtctgactgtcgaatttgcagtattgattatcggtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatgg |
1241065 |
T |
|
| Q |
207 |
atccattgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaac |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |
|
|
| T |
1241066 |
atccattgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacata-tttggcaaac |
1241164 |
T |
|
| Q |
307 |
acttaaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaat |
406 |
Q |
| |
|
|||||| ||| | |||||||||||||||||| |||||||||||| || |||||||||||| || |||||||| |||||||| |
|
|
| T |
1241165 |
acttaattgg--------------aaaatgagaatattgtacctgaaaggccaagatcatagccgaagattaagccttcaaatgctgcaatcatgcaagc |
1241250 |
T |
|
| Q |
407 |
gatgaacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
489 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
1241251 |
gatgaacaccctaaaggtgagttttcccggatattctttttcagagccatgtgctatgtaacctccagccattgtgttctttc |
1241333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 551 - 630
Target Start/End: Original strand, 42519628 - 42519707
Alignment:
| Q |
551 |
gtttagatatatgctgtcaggtatttttattatataaacagctaagtttttatttatcgacaaaataaacaacttgagtt |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42519628 |
gtttagatatatgctgtcaggtatttttattatataaacagctaagtttttatttatcgacaaaataaacaacttgagtt |
42519707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 42550991 - 42550872
Alignment:
| Q |
18 |
catggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgttagtgtc |
117 |
Q |
| |
|
|||||| ||||| |||||||| || |||||| |||||||| ||||| || || |||||||| ||||||||||||||||| |||||||| |||| || |
|
|
| T |
42550991 |
catggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaacaatgttaacgtt |
42550892 |
T |
|
| Q |
118 |
tgactgtcgaatttgcagta |
137 |
Q |
| |
|
|| || |||||| ||||||| |
|
|
| T |
42550891 |
tggctatcgaatctgcagta |
42550872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Original strand, 41972499 - 41972962
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972499 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaacaacgt |
41972598 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972599 |
-agtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
41972697 |
T |
|
| Q |
211 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41972698 |
attgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtcaaacactt |
41972797 |
T |
|
| Q |
311 |
aaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaatgatg |
410 |
Q |
| |
|
||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
41972798 |
caatgg--------------aaaatgagaatattgtacctgaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaagcgatg |
41972883 |
T |
|
| Q |
411 |
aacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
489 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
41972884 |
aacaccctaaaggtgagttttcccggatattctttttcagagccatgtgctatgtaacctccagccattgtgttgtttc |
41972962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 153; Significance: 9e-81; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 206 - 489
Target Start/End: Original strand, 1 - 270
Alignment:
| Q |
206 |
gatccattgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1 |
gatccattgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtcaaa |
100 |
T |
|
| Q |
306 |
cacttaaatggnnnnnnnnnnnnnnnnnnttagaatattgtacctgaaatgccaagatcataaccaaagattaagcctccacatgctgcagtcatgcaaa |
405 |
Q |
| |
|
||||| ||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |||||||| |
|
|
| T |
101 |
cacttcaatggaaaa--------------tgagaatattgtacctgaaatgccaagatcatagccgaagattaagcctccaaatgctgcaatcatgcaag |
186 |
T |
|
| Q |
406 |
tgatgaacaccctaaaggtgaattttcctggatattcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
489 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||| |||| |
|
|
| T |
187 |
cgatgaacaccctaaaggtgagttttcccggatattctttttcagagccatgtgctatgtaacctccagccattgtgttgtttc |
270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University