View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_low_21 (Length: 235)
Name: NF14197_low_21
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 141 - 227
Target Start/End: Complemental strand, 9736638 - 9736551
Alignment:
| Q |
141 |
tcaaacaactccattt-aaattcatcattctcttcttcaatcaatattgttgctagtggtttcaaaagtaaatttaaattatattctt |
227 |
Q |
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| T |
9736638 |
tcaaacaactccattttaaattcatcattctctccttcaatcaatattgttgccagtggtttcaaaagtaaatttaaattattttctt |
9736551 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 81 - 146
Target Start/End: Complemental strand, 9736723 - 9736658
Alignment:
| Q |
81 |
actcaaccacagtttctttttcttgctatataagacaacaatgtataccatctaatctactcaaac |
146 |
Q |
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| T |
9736723 |
actcaaccacggtttctttttcttgctttataagacaacaatgtatacaatctaatcgactcaaac |
9736658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 9736833 - 9736786
Alignment:
| Q |
16 |
aattcaaccacattggaca-aaaataaatcacataactcaaccacact |
62 |
Q |
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| T |
9736833 |
aattcaaccacattggacaaaaaaaaaatcacatgactcaaccacact |
9736786 |
T |
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