View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_low_4 (Length: 512)
Name: NF14197_low_4
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 16 - 497
Target Start/End: Original strand, 40126481 - 40126962
Alignment:
| Q |
16 |
catgaacatgaacatgacaataattatgaacatccttgtcctcatcttcaccaccctcttaacaacttcccactccgccacgtgtcctctcaacttcacc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126481 |
catgaacatgaacatgacaataattatgaacatcctcgtcctcatcttcaccactctcttaacaacttcccactccgccacgtgtcctctcaacttcacc |
40126580 |
T |
|
| Q |
116 |
ctcttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacaccatgccagttcgtccggcaagctctccgccttgtcc |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126581 |
ctcttaaccaccctcagcggcggcggagccaccacaaaaccaccatcttccttcacctcaacaccatgccagttcgtccggcaagctctccgccttgtcc |
40126680 |
T |
|
| Q |
216 |
aatccgactacctccgccgcaccgactctttcatccctccatcaaactcctccacaacatgctgggactctttccaatcctacatcaaccaattcgcacc |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
40126681 |
aatccgactacctccgccgcaccgactctttcatccctccatcaaactcctccacaacatgctgggactctttccaatcctacatcaaccaattcgaacc |
40126780 |
T |
|
| Q |
316 |
aaccttcaacattcgttcttcttgtggcttccaaactgagtggatctcacaaggttgtgtcaacgttactacaagacaacaatttgaagcacttgttcct |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40126781 |
aaccttcaacattcgttcttcttgtggcttccaaactgagtggatctcacaaggttgtgtcaacgttactacaagacaacaatttgaagcacttgttcct |
40126880 |
T |
|
| Q |
416 |
aaatccaatattcaaaatatgcaatcaaattgtaaccaatcaattcaagataactcaccttgtgctctttgtactactagtt |
497 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126881 |
aaatccaatattcaaaatatgcaatcaaattgtaaccaatcaattcaagataactcaccttgtgctctttgtactactagtt |
40126962 |
T |
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