View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14197_low_6 (Length: 408)
Name: NF14197_low_6
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 40030359 - 40029976
Alignment:
| Q |
1 |
ttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatccta |
100 |
Q |
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| T |
40030359 |
ttgcaccatcatttaagtgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatccta |
40030260 |
T |
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| Q |
101 |
cacacattcaaaacttaaggaattcaggttgattcagtaacacaaacataatcattaacagaaaacacatcttagaaacaaatatgtacctagtacctac |
200 |
Q |
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| T |
40030259 |
cacacattcaaaacttaaggaattcaggttgattcagtaacacaaacataa-------------acacatcttagaaacaaatatgtatcta-------c |
40030180 |
T |
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| Q |
201 |
caaattatccataa--------ggtcgattcagtaatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgta |
292 |
Q |
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| T |
40030179 |
caaattatccataatcttctaaggtcgattcagtaatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgta |
40030080 |
T |
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| Q |
293 |
gatgaagttgaagatattggagctccaagtgtaattacgctattggtatttggaacaaaaccgcacccaagattgtagcatccagtttgatatccatcct |
392 |
Q |
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| T |
40030079 |
gatgaagttgaagaaattggagctccaagtgtaattacgctattggtatttggaacaaaaccgcacccaagattgtagcatccagtttgatatccatcct |
40029980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 30925654 - 30925738
Alignment:
| Q |
20 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
104 |
Q |
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| T |
30925654 |
tgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaattcccagttttttgatcctgcaca |
30925738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 30916521 - 30916605
Alignment:
| Q |
20 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
104 |
Q |
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| T |
30916521 |
tgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaattcccattttttctatcctacaca |
30916605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 30905799 - 30905884
Alignment:
| Q |
1 |
ttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattccca |
86 |
Q |
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| T |
30905799 |
ttgcactatcctttaaacttgtgaacaaagaggatggccaatatccaattatgtttccagatccaaattcaagccaccaattccca |
30905884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 30927349 - 30927416
Alignment:
| Q |
226 |
taatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgtaga |
294 |
Q |
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| T |
30927349 |
taatctgagtagaaaatt-accttatagattaataaagtaatttcaatttgccgtccattatacgtaga |
30927416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 294
Target Start/End: Original strand, 30908018 - 30908085
Alignment:
| Q |
226 |
taatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgtaga |
294 |
Q |
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| T |
30908018 |
taatctgagtagaaaatt-accttatagattaataaagtaatagcacgttgccgtccattatacgtaga |
30908085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 29211259 - 29211350
Alignment:
| Q |
12 |
tttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacac |
103 |
Q |
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| T |
29211259 |
tttaagtgtgtgaatagggaggatggccaatatccaattaagtttccagatccatattcaagccaccaattcccatgctttggatcctacac |
29211350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 29312622 - 29312538
Alignment:
| Q |
20 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
104 |
Q |
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| T |
29312622 |
tgtgaacaaggtggctggccaatagccaagaaaatttccagatccatattcaagccaccaattcccactatttggatcctacaca |
29312538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 29255403 - 29255319
Alignment:
| Q |
20 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
104 |
Q |
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| T |
29255403 |
tgtgaacaaagaggatggccagtatccaatagggtttccaagtccatattcaagccaccaattcccattccttggatcctacaca |
29255319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 294
Target Start/End: Complemental strand, 29255058 - 29254977
Alignment:
| Q |
212 |
taaggtcgattcagtaatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgtaga |
294 |
Q |
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| T |
29255058 |
taaggtctatttggtaatctgagtagaaaatt-accttatagatgaataaggtaatttcatattgccctccattatatgtaga |
29254977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 29248776 - 29248692
Alignment:
| Q |
20 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
104 |
Q |
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||||||||||||||||||||| |||||||| |||||| | ||||||||||| |||| ||||| || || ||||||||||| |
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| T |
29248776 |
tgtgaacaaagaggatggccagtatccaatagggtttccaagtccatattcaagccaccaactcccattcgttggatcctacaca |
29248692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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