View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14197_low_8 (Length: 391)
Name: NF14197_low_8
Description: NF14197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14197_low_8 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr4 (3 HSPs) |
| |
|
| [»] scaffold0256 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 7581059 - 7580669
Alignment:
| Q |
1 |
ccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
7581059 |
ccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacatcgtccaaaaccagcaaacgtctttttccttgcaacatttcttgcacc |
7580960 |
T |
|
| Q |
101 |
tttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7580959 |
tttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgaccgagaatacctctgaaa |
7580860 |
T |
|
| Q |
201 |
cacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7580859 |
cacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaaaccaacaat |
7580760 |
T |
|
| Q |
301 |
gggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacaccttt |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7580759 |
tggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacaccttt |
7580669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 7100187 - 7100577
Alignment:
| Q |
1 |
ccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacc |
100 |
Q |
| |
|
||||||||| |||| |||||| ||||||||||||| | |||| |||| |||| |||||||||| |||||||||| | |||||||||||||||||||| |
|
|
| T |
7100187 |
ccatttctcttggtttagtccgaattcaaattcttcatttttgttccacacatcatccaaaaccaacaaacatcttgtaccttgcatcatttcttgcact |
7100286 |
T |
|
| Q |
101 |
tttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7100287 |
tttctttgtattacatctaactccattgaatcacacttttgttttgtcatggattctataatggaacacaaaatccccttgactgagaaaacctctgaaa |
7100386 |
T |
|
| Q |
201 |
cacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
7100387 |
cacaaacccaaatttttgttttgaaattgtcactcaccctatcatcattgtaaaccaattgagaaagagttgtttttccaacaccacctaaaccgacaat |
7100486 |
T |
|
| Q |
301 |
gggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacaccttt |
391 |
Q |
| |
|
|||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
7100487 |
gggatagacggataggaagtcagagtcctttgcttgggtgagaagaaactcaacaatcttctctttatcatcttctcgtccaaacatcttt |
7100577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 23 - 363
Target Start/End: Original strand, 17983686 - 17984026
Alignment:
| Q |
23 |
aattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaac |
122 |
Q |
| |
|
||||||||||||| |||||| |||| |||| ||| ||||||| ||| |||||||| | ||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
17983686 |
aattcaaattcttcacttttgttccacacatcgtcgaaaaccaacaagcatcttttacgttgcaacatttcttgcacctttctttgtattacctctaaac |
17983785 |
T |
|
| Q |
123 |
ccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgtttt |
222 |
Q |
| |
|
| ||| ||||| | || |||| ||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||| |||||||||||||||||||| |
|
|
| T |
17983786 |
ctatttcatcaaatttttgttctgtcatggattctataacggaacacaaaattcccttgactgagaaaacctttgaaacccaaacccaaatttttgtttt |
17983885 |
T |
|
| Q |
223 |
gaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtcc |
322 |
Q |
| |
|
|||| | | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
17983886 |
gaaaatttcactcacgttatcatcgttgtagaccaattgagcaagagttgtttttccaacaccacctaacccaacaatgggatagacggaaaggaagtca |
17983985 |
T |
|
| Q |
323 |
gagtccctcgcttgggtgagaagaaactcaacaatcctctc |
363 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17983986 |
gagaacctcgcttgggtgagaagaaactcaacaatcttctc |
17984026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 56 - 384
Target Start/End: Original strand, 30207343 - 30207671
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
||||||| ||||||| || |||| ||||||| || ||| ||||||||||||||||||||||||||| | | ||| |||||| | |||| || |||| |
|
|
| T |
30207343 |
tccaaaatcagcaaatatattttaccttgcagcaattcctgcacctttctttgtattacatctaaattgaagccgtcatacttctctcttgtgatagatt |
30207442 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
|||||||||| |||||||||| |||||| ||||| ||| |||||||||||||| |||||||| || |||||| |||||||||| |||| |||||||| |
|
|
| T |
30207443 |
ctataatggagcacaaaatcctcttgaccgagaaagtctcggaaacacaaacccatatttttgtattaaaattgctactcaccctagcatcattgtagac |
30207542 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |
|
|
| T |
30207543 |
caattgaacaagagttgtttttccaacaccacctaaaccaacaatgggatagacggaaaggaagtcggagtccctcgcttgggtgagaagaaactcgata |
30207642 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaa |
384 |
Q |
| |
|
||| ||||||||||||||||||| ||||| |
|
|
| T |
30207643 |
atcttctctttatcatcttctcgcccaaa |
30207671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 56 - 384
Target Start/End: Original strand, 29872995 - 29873323
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
|||||||| |||||| || |||| ||||||| || ||||||||||||||||| ||||||||||| | | || ||||||||| | |||| || |||| |
|
|
| T |
29872995 |
tccaaaacgagcaaatattttttaccttgcagcacttcttgcacctttctttccattacatctaattcgaagtcagcacacttctctcttgtgatagatt |
29873094 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||| ||| ||||||||||||||||| ||| | | |||||| |||||||||| |||| |||||||| |
|
|
| T |
29873095 |
ctataatggaacaacaaatcctcttgacagagaaagtctcagaaacacaaacccaaatatttttgtcaaaattgccactcaccctaacatcattgtagac |
29873194 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29873195 |
caattgaacgagagttgtttttccaataccacctaaaccaacaatgggatagacggaaaggaagtcagagtccctcgcttgggtgagaagaaactcaaca |
29873294 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaa |
384 |
Q |
| |
|
||| | ||||||||||||||||||||||| |
|
|
| T |
29873295 |
atcttttctttatcatcttctcgtccaaa |
29873323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 56 - 387
Target Start/End: Original strand, 30061193 - 30061524
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| || | ||||||||| ||||| |||||| | || | | || |||||||||| ||| || |||| |
|
|
| T |
30061193 |
tccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctctctttccattacagcataatcaaagtcaggacacttctgtaatgtgatagatt |
30061292 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||||||| ||||||||||||| ||| || ||||| ||| ||||||||||||||||||||| ||| |||||| |||||||||| |||| |||||||| |
|
|
| T |
30061293 |
ctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaacatcattgtagac |
30061392 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
30061393 |
caattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcaaca |
30061492 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
||| | ||||||||| |||||||||||||||| |
|
|
| T |
30061493 |
atcttttctttatcaacttctcgtccaaacac |
30061524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 56 - 387
Target Start/End: Original strand, 29854132 - 29854463
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
||||||||||||||| || |||| ||||||| || |||||||||| |||||| | |||||||||| | | || || |||||| | |||| || |||| |
|
|
| T |
29854132 |
tccaaaaccagcaaatatattttaccttgcaacaattcttgcacccttctttccaatacatctaaatcaaagtcagcagacttctctcttgtgatagatt |
29854231 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||| ||| ||||||||||| | |||||||||||| || ||||| ||||||||||||||| | | |||||| |||||||||| |||| |||||||| |
|
|
| T |
29854232 |
ctacaatagaacacaaaattctcttgactgagaaagtttcagaaacgcaaacccaaatttttttatcaaaattgccactcaccctaacatcattgtagac |
29854331 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
29854332 |
caattgaagaagagttgtttttccaacaccacctaaaccaaaaatgggatagacggaaaggaagtctgagtccctcgtttgggtgagaagaaactcaaca |
29854431 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
||| | |||||||||||||||||||||||||| |
|
|
| T |
29854432 |
atcttttctttatcatcttctcgtccaaacac |
29854463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 56 - 387
Target Start/End: Original strand, 30750467 - 30750798
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattg-catcacacttctgttttgtcatggat |
154 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| || | ||||||||||||||| |||||| | | || || | || |||||||| | ||| || ||| |
|
|
| T |
30750467 |
tccaaaaccaacaaatatcttttcccttgcaacaatccttgcacctttctttccattacagc-atactcaaagtcaggacacttctctaatgtgatagat |
30750565 |
T |
|
| Q |
155 |
tctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtaga |
254 |
Q |
| |
|
|||||||| ||||||||||||| ||| || ||||| ||| ||||||||||||||||||||| ||| ||||||| |||||||||| |||| ||||||| |
|
|
| T |
30750566 |
tctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgtcactcaccctaacatcattgtaga |
30750665 |
T |
|
| Q |
255 |
ccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaac |
354 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||| | |
|
|
| T |
30750666 |
ccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtcccttgcttgggtgagaagaaactcagc |
30750765 |
T |
|
| Q |
355 |
aatcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
|||| | ||||||||| |||||||||||||||| |
|
|
| T |
30750766 |
aatcttttctttatcaacttctcgtccaaacac |
30750798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 152 - 387
Target Start/End: Complemental strand, 30337714 - 30337479
Alignment:
| Q |
152 |
gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt |
251 |
Q |
| |
|
||||||||||| ||||||||||||| ||| || ||||| ||| ||||||||||||||||||||| ||| |||||| |||||||||| |||| |||| |
|
|
| T |
30337714 |
gattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaatttttttttcaaaattgccactcaccctaacatcattgt |
30337615 |
T |
|
| Q |
252 |
agaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc |
351 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
30337614 |
agaccaattgaacaagagttgtttttccaacaccacctaaaccaactatgggatagacggaaaggaagtcagagtccttcgcttgggtgagaagaaactc |
30337515 |
T |
|
| Q |
352 |
aacaatcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
||||||| | ||||||||| |||||||||||||||| |
|
|
| T |
30337514 |
aacaatcttttctttatcaacttctcgtccaaacac |
30337479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 56 - 387
Target Start/End: Original strand, 30400895 - 30401226
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
||||||| ||||||| || || | ||||||| || |||||||||||||||||||||||||||| || ||| |||||||| ||| | ||| || ||| |
|
|
| T |
30400895 |
tccaaaatcagcaaatatattctcccttgcaacaattcttgcacctttctttgtattacatctgaatccaaggcatcacatatctctcctgtaatatatt |
30400994 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||||||| ||||||||||||| |||||| ||||| ||| ||||||||||||||| | || | | |||| || ||||||||| |||| |||||||| |
|
|
| T |
30400995 |
ctataatagaacacaaaatcctcttgacagagaaagtctcggaaacacaaacccaagatcttatgtcaaaatagtccctcaccctaacatcattgtagac |
30401094 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| | |
|
|
| T |
30401095 |
caattgaacaagagttgttttaccaataccacctaaaccaacaatggggtagacggaaaggaagtcagagtccctcgcatgggtgagaagaaactcaaaa |
30401194 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
||| | ||||||||||||| |||||||||||| |
|
|
| T |
30401195 |
atcttttctttatcatcttttcgtccaaacac |
30401226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 56 - 387
Target Start/End: Original strand, 30476196 - 30476527
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| | |||| | | ||||||||||||||||||||| ||| |||||| |||| | |||||| || |||| |
|
|
| T |
30476196 |
tccaaaaccagcaaaaatcttttaccttgcaatagttctcgtgcttttctttgtattacatctaaatccaaggcatcaaacttgtcttttgtgatagatt |
30476295 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| ||| |||||||||| ||||| |||||| || |||||| ||| ||||||| ||| |||||||| |
|
|
| T |
30476296 |
ctataatggaacacaaaatccttttgacagagaaagtctccgaaacacaaatccaaacttttgtattaaaattgctacttaccctatgatcattgtagac |
30476395 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
|| ||||||||| |||||||| ||||||||||| | |||||||| ||||||| ||| |||||||| || | ||||||||||||||||||||| ||| |
|
|
| T |
30476396 |
catttgagcaagtgttgttttaccaacaccacctaggccaacaataggatagatggataggaagtcagatacttgcgcttgggtgagaagaaactcgaca |
30476495 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
||||||||| |||||||| ||||||||||||| |
|
|
| T |
30476496 |
atcctctctctatcatctactcgtccaaacac |
30476527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 45 - 391
Target Start/End: Complemental strand, 17417889 - 17417543
Alignment:
| Q |
45 |
tccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttt |
144 |
Q |
| |
|
|||| |||| |||||||||||| ||| ||||||| |||| || | ||||| |||||||||| ||| |||||||||| ||| ||||||||||| |
|
|
| T |
17417889 |
tccacacatcgtccaaaaccagaaaatatcttttacctttcaatagttctttcacctttcttagtaatacatctaaatccaaggcatcacactttccacc |
17417790 |
T |
|
| Q |
145 |
tgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatca |
244 |
Q |
| |
|
| | || |||||||| |||||||||||||||| ||||| |||||| | || |||||||||| |||||||||||| || |||||| |||||||||| || |
|
|
| T |
17417789 |
tattatagattctatgatggaacacaaaatcctcttgattgagaaagcatcagaaacacaaatccaaatttttgtattaaaattgctactcaccctaaca |
17417690 |
T |
|
| Q |
245 |
tcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaa |
344 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||| |||| |||||| || ||||| ||||||||||| ||||||| || | ||||| ||||||||||| | |
|
|
| T |
17417689 |
tcattgtagaccaattgagctagagttgttttaccaataccacctaacccaactatgggatagactgaaaggatttcacaatcccttgcttgggtgagca |
17417590 |
T |
|
| Q |
345 |
gaaactcaacaatcctctctttatcatcttctcgtccaaacaccttt |
391 |
Q |
| |
|
|||||||||||||| ||| | |||||||||| ||||||||||||||| |
|
|
| T |
17417589 |
gaaactcaacaatcttctttgtatcatcttcccgtccaaacaccttt |
17417543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 56 - 387
Target Start/End: Original strand, 30436634 - 30436965
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
||||||| ||||||| || |||| ||||||| || | ||||||||||||||| |||||||||||| | | || ||||||||| | |||| || |||| |
|
|
| T |
30436634 |
tccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaaatcaaagtcagcacacttctctcttgtgatagatt |
30436733 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||||| ||| ||||||||||||||||||||| | | |||||| ||||||||||| |||| ||||||| |
|
|
| T |
30436734 |
ctataatagaacacaaaatccttttgaccgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgtagat |
30436833 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| |||||||||| ||||||||| |||| ||||| |||||| |||| |||| |||||||||| ||| |
|
|
| T |
30436834 |
caattgaacaagagttgtttttccaataccacctaaaccaacaacgggatagacagaaataaagtcagagtccttcgcaagggtaagaagaaactggaca |
30436933 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
||| | ||||||||||| |||| ||| ||||| |
|
|
| T |
30436934 |
atcttttctttatcatcgtctcttcctaacac |
30436965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 152 - 371
Target Start/End: Complemental strand, 30712617 - 30712398
Alignment:
| Q |
152 |
gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt |
251 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||| ||| |||||||||||||||| |||| | | |||||| ||||||||||| |||| |||| |
|
|
| T |
30712617 |
gattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaaattttttatcaaaattgcgactcaccctaacatcattgt |
30712518 |
T |
|
| Q |
252 |
agaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc |
351 |
Q |
| |
|
||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
30712517 |
agatcaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactc |
30712418 |
T |
|
| Q |
352 |
aacaatcctctctttatcat |
371 |
Q |
| |
|
|||||| | |||||||||| |
|
|
| T |
30712417 |
gacaatcttttctttatcat |
30712398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 152 - 377
Target Start/End: Original strand, 30484318 - 30484543
Alignment:
| Q |
152 |
gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt |
251 |
Q |
| |
|
||||||||||| |||||||||||| |||||| ||||| ||| ||||||||||||||||||||| | | |||||| ||||||||||| |||| |||| |
|
|
| T |
30484318 |
gattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgcgactcaccctaacatcattgt |
30484417 |
T |
|
| Q |
252 |
agaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc |
351 |
Q |
| |
|
||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||| ||||| |||||| |||| | ||||||||||||||| |
|
|
| T |
30484418 |
agatcaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagttagagtccttcgcataggtgagaagaaactc |
30484517 |
T |
|
| Q |
352 |
aacaatcctctctttatcatcttctc |
377 |
Q |
| |
|
|||||| | ||||||||||| |||| |
|
|
| T |
30484518 |
gacaatcttttctttatcatcgtctc |
30484543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 30520965 - 30520588
Alignment:
| Q |
1 |
ccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacc |
100 |
Q |
| |
|
||||||||| ||| || ||||||||| | ||||||| || | |||| |||| |||||||| |||||| ||||||| |||| || || ||||||||| |
|
|
| T |
30520965 |
ccatttctcttggcttaatccaaattccagttcttgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcact |
30520866 |
T |
|
| Q |
101 |
tttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaa |
200 |
Q |
| |
|
| || |||||| ||||||||| | | ||||||||||| | | ||| | ||||||||||| | ||||||||| || || ||||| |||| |||| |
|
|
| T |
30520865 |
tgtcgttgtataacatctaaatctaaggcatcacacttttctcttgaaaaagattctataatagtacacaaaattttgttaacagagaaagcctcagaaa |
30520766 |
T |
|
| Q |
201 |
cacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaat |
300 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||| | ||| || || || |||||||||||||||||||| |||| |||||| || |||||||| |
|
|
| T |
30520765 |
cacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaat |
30520666 |
T |
|
| Q |
301 |
gggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcg |
378 |
Q |
| |
|
||||||| |||||||| ||| ||| || | |||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
30520665 |
tggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcg |
30520588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 30561305 - 30560928
Alignment:
| Q |
1 |
ccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacc |
100 |
Q |
| |
|
||||||||| ||| || ||||||||| | ||||||| || | |||| |||| |||||||| |||||| ||||||| |||| || || ||||||||| |
|
|
| T |
30561305 |
ccatttctcttggcttaatccaaattccagttcttgatttctgttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcact |
30561206 |
T |
|
| Q |
101 |
tttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaa |
200 |
Q |
| |
|
| || |||||| ||||||||| | | ||||||||||| | | ||| | ||||||||||| | ||||||||| || || ||||| |||| |||| |
|
|
| T |
30561205 |
tgtcgttgtataacatctaaatctaaggcatcacacttttctcttgaaaaagattctataatagtacacaaaattttgttaacagagaaagcctcagaaa |
30561106 |
T |
|
| Q |
201 |
cacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaat |
300 |
Q |
| |
|
||||||||||||||||||| | ||||||| |||||||| | ||| || || || |||||||||||||||||||| |||| |||||| || |||||||| |
|
|
| T |
30561105 |
cacaaacccaaatttttgtatcaaaattgtcactcacccggtgatcattataaactaattgagcaagagttgttttcccaataccacctaagccaacaat |
30561006 |
T |
|
| Q |
301 |
gggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcg |
378 |
Q |
| |
|
||||||| |||||||| ||| ||| || | |||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
30561005 |
tggatagatggaaaggaggtcagagccctttgcttgggtgagaagaaactcgacaatcttctctttatcatcttctcg |
30560928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 387
Target Start/End: Complemental strand, 30676573 - 30676242
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattg-catcacacttctgttttgtcatggat |
154 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| || | |||||||||||| || |||||| | | || || | || |||||||| | ||| || ||| |
|
|
| T |
30676573 |
tccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttccttccattacagc-atactcaaagtcaggacacttctctaatgtgatagat |
30676475 |
T |
|
| Q |
155 |
tctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtaga |
254 |
Q |
| |
|
|| | ||| ||||||||||||| |||||| ||||| ||| |||||||||||||||| |||| | | |||| | |||||||||| |||| ||| ||| |
|
|
| T |
30676474 |
tcgaaaatagaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaacttttttatcaaaatggccactcaccctaacatcattgaaga |
30676375 |
T |
|
| Q |
255 |
ccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaac |
354 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| ||||||| |||||||||||| |||| |||||| |||||| |||| ||||||||||||||||| || |
|
|
| T |
30676374 |
tcaattgaacaagagttgtttttccaataccacctaaaccaaaaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgac |
30676275 |
T |
|
| Q |
355 |
aatcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
|||| | |||| |||| |||||||||||||||| |
|
|
| T |
30676274 |
aatcttttcttgatcaacttctcgtccaaacac |
30676242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 387
Target Start/End: Complemental strand, 30241666 - 30241335
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
|||||||| |||||| || |||| ||||| | || ||| ||||||||| | ||| |||||| |||| | | ||||| |||||| || ||| || ||| |
|
|
| T |
30241666 |
tccaaaactagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacatttaaatcaaagccatcatacttcttttctgtgataaatt |
30241567 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||| |||||||||||||||| ||| || || |||||| |||||| || |||| |||||||| |
|
|
| T |
30241566 |
gtataatggaacacaaaatcctgttgacagagaaattctcagaaacacaaacccaaactttagtattaaaattgctactcacggtaacatcattgtagac |
30241467 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
| ||||| |||||| |||||||||| |||||| || |||| || |||||||| |||||||||||| |||||| | ||||||||||||||||||| | | |
|
|
| T |
30241466 |
cgattgaagaagagtggtttttccaagaccacctaacccaaaaacgggatagatggaaaggaagtcggagtcctttgcttgggtgagaagaaactggata |
30241367 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaacac |
387 |
Q |
| |
|
||| ||| |||||| ||||||||||||||||| |
|
|
| T |
30241366 |
atcttctttttatcgtcttctcgtccaaacac |
30241335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 200 - 350
Target Start/End: Complemental strand, 30330350 - 30330200
Alignment:
| Q |
200 |
acacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaa |
299 |
Q |
| |
|
||||||||||||||| || | || ||||| |||||||||| ||| | || || |||| || ||| |||||||||||||| ||| || |||||||| | |
|
|
| T |
30330350 |
acacaaacccaaattattatattaaaatttccactcaccctaatatcatcgtggatcaatcgaacaatagttgtttttccaatacctcctaaaccaacta |
30330251 |
T |
|
| Q |
300 |
tgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaact |
350 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
30330250 |
tgggatagatggaaaggaagtcagtgtccctcgcttgggtgagaagaaact |
30330200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 13617361 - 13617755
Alignment:
| Q |
1 |
ccatttctcatggtctagtccaaattcaaattcttgactttttatccaaacattgtccaaaaccagcaaacatctttttc--cttgcatcatttcttgca |
98 |
Q |
| |
|
|||||||| |||||||| || |||||||| ||||||||||| ||||||| | ||||||||| |||||| ||||||| | |||||| ||||||||||| |
|
|
| T |
13617361 |
ccatttcttatggtctattctgaattcaaactcttgacttttgttccaaacgtcgtccaaaacaagcaaaaatcttttacaccttgcagcatttcttgca |
13617460 |
T |
|
| Q |
99 |
cctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggattctataatggaacacaaaatccccttgactgagaatacctctga |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | || || |||||| |||||| | |
|
|
| T |
13617461 |
cctttctttgtattacatctaaatatgttgcatcacacttctgttttgtcatggattctataatggaaagcaaaattctctagattgagaaaacctctaa |
13617560 |
T |
|
| Q |
199 |
aacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagaccaattgagcaagag--ttgtttttccaacaccaccgaaaccaa |
296 |
Q |
| |
|
|| ||| ||||||||||||||||||||||||| || |||| ||||||| || ||||| | ||||||| ||| || ||||| |||||||||| ||||||| |
|
|
| T |
13617561 |
aatacatacccaaatttttgttttgaaattgtcacccaccttatcatcattttagacaatttgagcaggagttttttttttgcaacaccacctaaaccaa |
13617660 |
T |
|
| Q |
297 |
caatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacaccttt |
391 |
Q |
| |
|
||||||||||| | ||||| ||||| ||| ||||| ||||||||||| ||||| ||||||| ||||||||| ||||| |||||||||||||||| |
|
|
| T |
13617661 |
caatgggatagtcagaaagaaagtcagaggccctcacttgggtgagatgaaacctaacaatcttctctttattatcttatcgtccaaacaccttt |
13617755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 56 - 384
Target Start/End: Original strand, 52352780 - 52353108
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||| || ||||||| | |||||||||| ||||||||| | | |||||||||| | | |||| || |||| |
|
|
| T |
52352780 |
tccaaaaccaacaaatatcttttaccttgcaacaattcttgcgctcttctttgtatcacatctaaatctaagccatcacacttttctcttgtaatagatt |
52352879 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||| ||||||||||||||||||||| | | || || | |||||| ||| |||| |||||||| |
|
|
| T |
52352880 |
ctataatggaacacaaaatcctattgacagagaaatcctcagaaacacaaacccaaatttttctatgaaattttttactcactctaacatcattgtagac |
52352979 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| ||||||||||| ||||| || ||||||||| | | ||||||||||||||||||||||| || |
|
|
| T |
52352980 |
caattgaacaagagttgttttaccaacaccacctaaaccaacaataggatacacaacaaggaagtcaaacttactcgcttgggtgagaagaaactcggca |
52353079 |
T |
|
| Q |
356 |
atcctctctttatcatcttctcgtccaaa |
384 |
Q |
| |
|
||| |||||||||| |||| |||||||| |
|
|
| T |
52353080 |
atcttctctttatcttctttccgtccaaa |
52353108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 152 - 377
Target Start/End: Complemental strand, 20295771 - 20295546
Alignment:
| Q |
152 |
gattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgt |
251 |
Q |
| |
|
||||||||||| |||| |||||||| || || ||||| ||| |||||||||||||||||| || | | |||||| |||||| | |||||| |||| |
|
|
| T |
20295771 |
gattctataatagaacgcaaaatcctctcgaaggagaaagtctcagaaacacaaacccaaattcttttatcaaaattgccactcacgcgatcatcattgt |
20295672 |
T |
|
| Q |
252 |
agaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactc |
351 |
Q |
| |
|
|||| |||||| |||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
20295671 |
agactaattgaacaagagttgtttttccaataccacctaaaccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactc |
20295572 |
T |
|
| Q |
352 |
aacaatcctctctttatcatcttctc |
377 |
Q |
| |
|
|||||| | | ||||||||| |||| |
|
|
| T |
20295571 |
gacaatcttttttttatcatcgtctc |
20295546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 45 - 384
Target Start/End: Complemental strand, 25293243 - 25292904
Alignment:
| Q |
45 |
tccaaacattgtccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttt |
144 |
Q |
| |
|
|||| |||| |||||||| |||||| || |||| ||||||| | ||||| ||||||||||||||||||||||||| | | ||||||||||||| | | |
|
|
| T |
25293243 |
tccacacatcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttctttgtattacatctaaatcaaaggcatcacacttctctct |
25293144 |
T |
|
| Q |
145 |
tgtcatggattctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatca |
244 |
Q |
| |
|
|| || ||||||||||||||||||||||||| |||||| ||||| ||| ||||||||||||||||||||||| || ||| || |||||||||| || |
|
|
| T |
25293143 |
agtgatagattctataatggaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaatttttgtattaaaagtgctactcaccctaaca |
25293044 |
T |
|
| Q |
245 |
tcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaa |
344 |
Q |
| |
|
|| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
25293043 |
tcattgtagaccaattgaacaagagttgtttttccaacaccacctaaaccaacaatgggatggacggaaaggaagtcagagtcccttgcttgggtaagaa |
25292944 |
T |
|
| Q |
345 |
gaaactcaacaatcctctctttatcatcttctcgtccaaa |
384 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||||||||| |
|
|
| T |
25292943 |
gaaactcgacagtcttctctttatcatcttctcgtccaaa |
25292904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 38939140 - 38939073
Alignment:
| Q |
242 |
tcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagac |
309 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||| ||||| | ||||||||||| |||||| |
|
|
| T |
38939140 |
tcattgttgtagaccaattgagcaagtgttgtttttccatatccacctagaccaacaatggaatagac |
38939073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 280
Target Start/End: Complemental strand, 7053047 - 7053009
Alignment:
| Q |
242 |
tcatcgttgtagaccaattgagcaagagttgtttttcca |
280 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
7053047 |
tcatcgttatagaccaattgagcaagtgttgtttttcca |
7053009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 56 - 377
Target Start/End: Original strand, 26708153 - 26708474
Alignment:
| Q |
56 |
tccaaaaccagcaaacatctttttccttgcatcatttcttgcacctttctttgtattacatctaaacccattgcatcacacttctgttttgtcatggatt |
155 |
Q |
| |
|
||||||| ||||||| || |||| ||||||| || | ||||||||||||||| ||||||||||| | | || |||||||| | ||| || |||| |
|
|
| T |
26708153 |
tccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaactcaaagtcaggacacttctctaatgtgatagatt |
26708252 |
T |
|
| Q |
156 |
ctataatggaacacaaaatccccttgactgagaatacctctgaaacacaaacccaaatttttgttttgaaattgtgactcaccctatcatcgttgtagac |
255 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||| | | ||||||| |||||||||| |||||||||||| |
|
|
| T |
26708253 |
ctataatagaacacaaaatcctcttgactgagaaagtctcagaaacacaaacccaaatttttttatcaaaattgtcactcaccctaacatcgttgtagat |
26708352 |
T |
|
| Q |
256 |
caattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagacggaaaggaagtccgagtccctcgcttgggtgagaagaaactcaaca |
355 |
Q |
| |
|
||| ||| |||||||||||||||||| |||||| || ||||||||||||||||| |||| |||||| |||||| |||| ||||||||||||||||| ||| |
|
|
| T |
26708353 |
caactgaacaagagttgtttttccaataccacctaagccaacaatgggatagacagaaatgaagtcagagtccttcgcatgggtgagaagaaactcgaca |
26708452 |
T |
|
| Q |
356 |
atcctctctttatcatcttctc |
377 |
Q |
| |
|
||| | ||||||||||| |||| |
|
|
| T |
26708453 |
atcttttctttatcatcgtctc |
26708474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 13378471 - 13378538
Alignment:
| Q |
242 |
tcatcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagac |
309 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
13378471 |
tcatcgttgtacaccaattgagcaagtgttgtttttccatatccacctaggccaacaatggaatagac |
13378538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 309
Target Start/End: Original strand, 9527 - 9591
Alignment:
| Q |
245 |
tcgttgtagaccaattgagcaagagttgtttttccaacaccaccgaaaccaacaatgggatagac |
309 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
9527 |
tcgttgtaaaccaattgagcaagtgttgtttttccatatccacctaggccaacaatggaatagac |
9591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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