View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_high_14 (Length: 257)
Name: NF14198_high_14
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 8675834 - 8675591
Alignment:
| Q |
1 |
gttgctacatgtttagcgaggaacatcttcctcggaatgcagcttgaaaacgtgcgcttctgccacatgtcattattgttgcatggcgaggaaagagttc |
100 |
Q |
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|||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
8675834 |
gttgctgcatgtttagtgaggaacatcttccttggaatgcagcttgaaaacgtgtgcttctgccacatgtcattgtttttgcatggcgaggaaagagttc |
8675735 |
T |
|
| Q |
101 |
ctcggattttcctcgaaaattgacactggtatagcgagcaaaatgttccttggaaaaacgtatttttagtgaggaacaacttcttcctcgaaaagtttcg |
200 |
Q |
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||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
8675734 |
ctcggattttcctcgaaaattgacactggtatagcaaggaatatgttccttggaaaaacgtatttttagcgaggaacaatttcttcctcgaaaagtttcg |
8675635 |
T |
|
| Q |
201 |
tccgaattccatggatttcttgtagtgagttttgagttctaaat |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8675634 |
tccgaattccatggatttcttgtagtgagttttgagttctaaat |
8675591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 33310793 - 33310671
Alignment:
| Q |
3 |
tgctacatgtttagcgaggaacatcttcctcggaatgcagcttgaaaacgtgcgcttctgccacatgtcattattgttgcatggcgaggaaagagttcct |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| | | ||| || ||| | |||| | |||||||||||| | |||||||||||| |
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| T |
33310793 |
tgctgcatgtttagcgaggaacatcttcctcggaatgcagcttgaaaatgcgtgctcctaccatacgtcactgttgttgcatggcaaagaaagagttcct |
33310694 |
T |
|
| Q |
103 |
cggattttcctcgaaaattgaca |
125 |
Q |
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| T |
33310693 |
cggactttccatgaaaattgaca |
33310671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 121 - 228
Target Start/End: Complemental strand, 33310642 - 33310535
Alignment:
| Q |
121 |
tgacactggtatagcgagcaaaatgttccttggaaaaacgtatttttagtgaggaacaacttcttcctcgaaaagtttcgtccgaattccatggatttct |
220 |
Q |
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||||||||||||| ||| ||||||||||| |||||| || |||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||| | |
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| T |
33310642 |
tgacactggtataatgaggaaaatgttcctcaaaaaaacataattttagcgaggaacaacttcttcctcaaaaagtttcgtcggaattccatcgattttt |
33310543 |
T |
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| Q |
221 |
tgtagtga |
228 |
Q |
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||| |||| |
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| T |
33310542 |
tgttgtga |
33310535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 27256855 - 27256751
Alignment:
| Q |
21 |
gaacatcttcctcggaatgcagcttgaaaacgtgcgcttctgccacatgtcattattgttgcatggcgaggaaagagttcctcggattttcctcgaaaat |
120 |
Q |
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|||||||||||||||||||||||||||||| | | ||| ||||||||||| | |||||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
27256855 |
gaacatcttcctcggaatgcagcttgaaaatgcgtgctcttgccacatgtctctgctgttgcatggtgaggaaagagttcctcggattttcatcggaaat |
27256756 |
T |
|
| Q |
121 |
tgaca |
125 |
Q |
| |
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||||| |
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| T |
27256755 |
tgaca |
27256751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 123
Target Start/End: Original strand, 31315627 - 31315751
Alignment:
| Q |
3 |
tgctacatgtttagcgaggaacatcttcctcggaatgcagcttgaaaacgtgcgcttctgccacatgtcattattgttgcatg----gcgaggaaagagt |
98 |
Q |
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|||| |||||||||| ||||| |||||||| |||||||| |||||||| ||| ||| ||||||||||||| | |||||||||| |||| |||||||| |
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| T |
31315627 |
tgctgcatgtttagcaaggaatatcttccttggaatgcaacttgaaaatgtgtgctcctgccacatgtcactgttgttgcatgcatggcgatgaaagagt |
31315726 |
T |
|
| Q |
99 |
tcctcggattttcctcgaaaattga |
123 |
Q |
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||||| | || | ||||||||||| |
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| T |
31315727 |
tcctcatacttgcttcgaaaattga |
31315751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 31365511 - 31365630
Alignment:
| Q |
8 |
catgtttagcgaggaacatcttcctcggaatgcagcttgaaaacgtgcgcttctgccacatgtcattattgttgcatg----gcgaggaaagagttcctc |
103 |
Q |
| |
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|||||||||| ||||| |||||||| ||||||| |||||||| ||| ||| ||||||||||||| | |||||||||| |||| ||||||||||||| |
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| T |
31365511 |
catgtttagcaaggaatatcttccttagaatgcaacttgaaaatgtgtgctcctgccacatgtcactgttgttgcatgcatggcgatgaaagagttcctc |
31365610 |
T |
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| Q |
104 |
ggattttcctcgaaaattga |
123 |
Q |
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| || | ||||||||||| |
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| T |
31365611 |
atacttgcttcgaaaattga |
31365630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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