View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_high_17 (Length: 248)
Name: NF14198_high_17
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_high_17 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 8676078 - 8675853
Alignment:
| Q |
19 |
aaagtgttaagagaaaaatgatagatgaaaaaattatgcaaaagagtgggtattacatagaagagatttgaatttttctgaatgaacatttcgaagaact |
118 |
Q |
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| T |
8676078 |
aaagtgttaagagaaaaatgatagatgaaaaaattatgcaaa-gagtgggtattacatagaa---atttaaatttttctgaatgaacattccgaggaact |
8675983 |
T |
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| Q |
119 |
tcttcctcggattccaatatttgnnnnnnnnttaatcccgcccatttccccgcacaaatttcgattttcaataatgtacattccgaaaaacttttctctt |
218 |
Q |
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| T |
8675982 |
tcttcctcggattccaatatttgaaaaaaaattaatccaacccatttccccgcacaaatttcgattttcaataatgtacattccgaaaaaaatttctctt |
8675883 |
T |
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| Q |
219 |
cggtaattcaatgttgactgacaatgattt |
248 |
Q |
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| T |
8675882 |
ccgtaattcaatgttgaccgacaatgattt |
8675853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 33311276 - 33311155
Alignment:
| Q |
19 |
aaagtgttaagagaaaaatgatagatgaaaaaattatgcaaaagagtgggtattacatagaagagatttgaa-tttttctgaatgaacatttcgaagaac |
117 |
Q |
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||||||||| ||||||||||||| || ||||||||||| |||||||||| ||| ||||||| ||||||| ||||| | |||||||||| ||| |||| |
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| T |
33311276 |
aaagtgttatgagaaaaatgataaattaaaaaattatg-ttaagagtgggtgttatttagaagaaatttgaatttttttttaatgaacattccgaggaac |
33311178 |
T |
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| Q |
118 |
ttcttcctcggattccaatattt |
140 |
Q |
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| T |
33311177 |
ttcttcctttgaatccaatattt |
33311155 |
T |
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