View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_high_5 (Length: 487)
Name: NF14198_high_5
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 2816287 - 2816754
Alignment:
| Q |
1 |
aaaattacattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacatttaaattcattcaacaca |
100 |
Q |
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| T |
2816287 |
aaaattatattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacatttaaattcattcaacaca |
2816386 |
T |
|
| Q |
101 |
cacaatttcgatattcatacatatttattttctcatcaaagtcataaaaagtcatataagtcatgggagtcataattgctacggtatttaaataccgata |
200 |
Q |
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| T |
2816387 |
cacaatttcgatattcatagatatttattttctcatcaaagtcataaaaagtcatctaagtcatgggagtcataattgctacggtatttaaataccgata |
2816486 |
T |
|
| Q |
201 |
tacgtcgttcatcagaaaaattaggaaaaatcaaaatacatagtcataataatgtcccctttctacgtgtgactcgaaacatattgatcggctatgtttc |
300 |
Q |
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| T |
2816487 |
tacgttgttcgtcagaaaaattgggaaaaatcaaaatacatagtcataataatgtcccctttctacgtgtgactcgaaacagattgatcggctatgtttc |
2816586 |
T |
|
| Q |
301 |
atgggaaatttatttcataataccatatagatcatcataattttttatgccatccaacactatggtctgaaccagcccgcatatctacaaagtgtccaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2816587 |
atgggaaatttatttcataataccatatagatcatcataattttttatgccat-cgacactatggtccgaaccagcccgcatatctacaaagtgtccaga |
2816685 |
T |
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| Q |
401 |
gtatcattttcattcttctcctctatcaacaccttcacattctcctgcaaagtaaccatcctgtgttat |
469 |
Q |
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| T |
2816686 |
gtatcattttcattcttctcctctatcaacaccttcacattctcctgcaaagtaaccatcccgtgttat |
2816754 |
T |
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