View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_low_14 (Length: 311)
Name: NF14198_low_14
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 6451846 - 6451551
Alignment:
| Q |
1 |
caatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451846 |
caatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagata |
6451747 |
T |
|
| Q |
101 |
tactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacagacggtgaacaagcccttaagtttccaccacctcaagtaattagaggtac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451746 |
tactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacagacggtgaacaagcccttaagtttccaccacctcaagtaattagaggtac |
6451647 |
T |
|
| Q |
201 |
tttattcatcttaatcaaaccacctacctatagttaacatgttcgtcacactcacatattatagtattagcatatcaaacaacataaaactcgtat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6451646 |
tttattcatcttaatcaaaccacctacctatagttaacatgttcgtcacactcacatattatagtattagcatatcaaacaacataaaactcgtat |
6451551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 6457935 - 6457727
Alignment:
| Q |
2 |
aatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatat |
101 |
Q |
| |
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||||||| |||||||| || |||||||| || |||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
6457935 |
aatctgtgatttttgacctcaatttcacaccaaatgagttcgatagcttcgatgaagtacgtggacttttcgaaggtgggattaagcttcctacagatat |
6457836 |
T |
|
| Q |
102 |
actcagccaaatcagccccttgccagcccttaaggaaatcctccgcacagacggtgaacaagcccttaagtttccaccacctcaagtaattagaggtact |
201 |
Q |
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| T |
6457835 |
acttagtcaaattagtcccttaccggcccttaaggaaatctttcgcactgacggtgaacaagtcctcaagtttccacctcctcatgtaatcaaaggtacc |
6457736 |
T |
|
| Q |
202 |
ttattcatc |
210 |
Q |
| |
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|| |||||| |
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|
| T |
6457735 |
ttgttcatc |
6457727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 113
Target Start/End: Complemental strand, 6264308 - 6264220
Alignment:
| Q |
25 |
ttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatactcagccaaat |
113 |
Q |
| |
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||||| |||||||| ||||||||||| ||||| |||| || || | ||||| ||||||||||| || ||||||||||| |||||||| |
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| T |
6264308 |
ttcacaccgaatgaatttgatagctttgatgatgtgcttgatctatatgaaggaggaattaagctaccaacagatatacttagccaaat |
6264220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 9603491 - 9603701
Alignment:
| Q |
2 |
aatctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggactt-ttcgaaggtggaattaagcttcctacagata |
100 |
Q |
| |
|
|||||||||| |||||| |||||||||| || ||||||||||||||||||||||||||||||| |||| || |||||||||||| | ||||||||| ||| |
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| T |
9603491 |
aatctgtaatctttgatttgaatttcactccaaatgagtttgatagcttcgatgaagtgcgtg-acttatttgaaggtggaattgaacttcctacacata |
9603589 |
T |
|
| Q |
101 |
tactcagccaaatcagccccttgccagcccttaaggaaatcctccgcacagacggtgaacaagcccttaagtttccaccacctcaagtaattagaggtac |
200 |
Q |
| |
|
|| | ||| ||||||| ||||| |||| || |||||||| ||||||| || |||||||||| ||| |||||||||||||| || ||||| |||||||| |
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| T |
9603590 |
tattgagcaaaatcagtcccttaccagtactcaaggaaattttccgcactgatggtgaacaagtcctcaagtttccaccaccacatgtaatcagaggtac |
9603689 |
T |
|
| Q |
201 |
tttattcatctt |
212 |
Q |
| |
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||||| ||||| |
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|
| T |
9603690 |
attattaatctt |
9603701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 42694025 - 42693925
Alignment:
| Q |
4 |
tctgtaatttttgatctgaatttcaccccgaatgagtttgatagcttcgatgaagtgcgtggacttttcgaaggtggaattaagcttcctacagatatac |
103 |
Q |
| |
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|||||||| |||||| | |||||||| || ||||||||||||||||| |||||||| | |||| | | || |||||||||||||| || |||||| ||| |
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| T |
42694025 |
tctgtaatctttgatttaaatttcacaccaaatgagtttgatagctttgatgaagttcatggattgtatgagggtggaattaagctgccaacagatgtac |
42693926 |
T |
|
| Q |
104 |
t |
104 |
Q |
| |
|
| |
|
|
| T |
42693925 |
t |
42693925 |
T |
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