View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14198_low_15 (Length: 280)
Name: NF14198_low_15
Description: NF14198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14198_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 34380777 - 34380525
Alignment:
| Q |
18 |
attaacaggtaaaaattcatagtagcacatggtggggataagagtataagacacatgacaaggcttagaaagaggattaaggttaacaccaaagtaacat |
117 |
Q |
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| T |
34380777 |
attaacaggtaaaaattcatagtagcacatggtggggataagagtataagacacatgacaaggcttagaaagaggattaaggttaacaccaaagtaacat |
34380678 |
T |
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| Q |
118 |
tcactagatgcatacatagtacaaactagtggtaacccattactatagtaatccaaagtaggaatgtactgtgacattgttcctgtcacaataacatcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34380677 |
tcactagatgcatacatagtacaaactagtggtaacccattactatagtaatccaaagtaggaatgtactgtgacattgttcctgtcacaataacatcta |
34380578 |
T |
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| Q |
218 |
catacttagtattaggccacaacctagttataataccttgccaagaacctttg |
270 |
Q |
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| T |
34380577 |
catacttagtattaggccacaacctagttataataccttgccaagaacctttg |
34380525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 23955858 - 23956100
Alignment:
| Q |
22 |
acaggtaaaaattcatagtagcacatggtggggataagagtataagacacatgacaaggcttagaaagaggattaaggttaacaccaaagtaacattcac |
121 |
Q |
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| T |
23955858 |
acaggcaaaaattcaaagtagcacatggtaggaataagagtgtaagacacttcactaggttgacaaagagggttcaagttaacaccaaagtaacattcac |
23955957 |
T |
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| Q |
122 |
tagatgcatacatagtacaaactagtggtaacccattactatagtaatccaaagtaggaatgtactgtgacattgttcctgtcacaataacatctacata |
221 |
Q |
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| T |
23955958 |
tagaagcatacatagtgcaaacaagtggtaaaccattgctataatgatccaaaataggaatatactgtgacattgttccagtcacaataacatccacata |
23956057 |
T |
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| Q |
222 |
cttagtattaggccacaacctagttataataccttgccaagaa |
264 |
Q |
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| T |
23956058 |
cttagtattaggccaaagcctagtaattatcccctgccaagaa |
23956100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 245
Target Start/End: Original strand, 15836942 - 15837081
Alignment:
| Q |
106 |
ccaaagtaacattcactagatgcatacatagtacaaactagtggtaacccattactatagtaatccaaagtaggaatgtactgtgacattgttcctgtca |
205 |
Q |
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||||| ||||| ||| ||| |||||||||||||| || || || | ||||| ||||| ||||||||| | ||||| ||||| ||||||||||| || | |
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| T |
15836942 |
ccaaaataacactcagaagaagcatacatagtacacacaagaggaagaccattgctataataatccaaaatcggaatatactgcgacattgttccggtaa |
15837041 |
T |
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| Q |
206 |
caataacatctacatacttagtattaggccacaacctagt |
245 |
Q |
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| T |
15837042 |
caataacatcaacatacttactgttaggccataacctagt |
15837081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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